Downloads

The sequences and functional annotations for this organism are available for download. These links are automatically updated as new version of the functional annotations become available.

Description

• CopciDB_description.pdf
  Brief description of the elements of the website

Genome and genes

• CopciAB_new_jgi_20220113.fasta.gz
  Coprinopsis cinerea AmutBmut genome sequence
• CopciAB_new_jgi_20220113.gtf.gz
  Coprinopsis cinerea AmutBmut gene annotation
• Coprinopsis_cinerea.unmasked.fasta.gz
  Coprinopsis cinerea Okayama 7 genome sequence
• Copci1.filtered_proteins.BroadModels1.gff3.gz
  Coprinopsis cinerea Okayama 7 gene annotation

Functional Annotations

• CopciABprotAll_iproscan93_header_clean.zip
  Coprinopsis cinerea AmutBmut InterProScan v93 annotation
• CopciAB_out.emapper.annotations_clean.zip
  Coprinopsis cinerea AmutBmut EggNOG v5.0/eggnog-mapper v2 annotation
• CopciAB_signalP.zip
  Coprinopsis cinerea AmutBmut SignalP v5 annotation
• CopciAB_tmhmm_clean.zip
  Coprinopsis cinerea AmutBmut TMHMM2 annotation
• CopciOprotT0_iproscan93_header_clean.zip
  Coprinopsis cinerea Okayama 7 InterProScan v93 annotation
• CopciOprotT0_out.emapper.annotations_clean.zip
  Coprinopsis cinerea Okayama 7 EggNOG v5.0/eggnog-mapper v2 annotation
• CopciO_signalP.zip
  Coprinopsis cinerea Okayama 7 SignalP v5 annotation
• CopciO_tmhmm_clean.zip
  Coprinopsis cinerea Okayama 7 TMHMM2 annotation

Gene Sets

• CopciAB_KEGGPathwayGeneSets.tsv
  CopciAB KEGG Pathway Gene Sets