CopciAB_1001182
Coprinopsis cinerea A43mutB43mut pab1-1 #326

General data

Systematic name CopciAB_1001182 Strain Coprinopsis cinerea Okayama 7
Standard name - Synonyms
Uniprot id Functional description
Location scaffold_5:2313139..2313766 Strand -
Gene length (nt) 628 Transcript length (nt) 567
CDS length (nt) 360 Protein length (aa) 119

Reciprocal best hits in model fungi

Strain name Gene / Protein name

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
0

Expression

Name Summary Attribution Assay type
Carbon metabolism Transcriptional changes along alternative morphogenetic paths of C. cinerea Xie et al. 2020 RNA-Seq
Sample Mean cpm SD cpm Se of mean
sclerotia 0.1934 0.0947 0.0547
oidia 0.5488 0.0958 0.0553
vegetative_mycelium 0.4652 0.052 0.03
primordia 0.0823 0.0734 0.0423
hyphal_knot 0.2734 0.043 0.0248
young_fruiting_body 0.133 0.1154 0.0666
Complex carbon sources 1 (long incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control - glucose 0.5536 0.3853 0.2225
Wheat bran 0.761 0.2729 0.1575
Horse manure 0.1869 0.1619 0.0935
Oak leaves 0.5151 0.296 0.1709
Hay 0.5099 0.2841 0.164
Corn stalk 0.48 0.2084 0.1203
Pectine 0.5465 0.111 0.0641
Microcrystalline cellulose 0.2677 0.0703 0.0406
Xylose 0.3892 0.3796 0.2192
Cellobiose 0.6123 0.2344 0.1353
Lignin 0.4181 0.2942 0.1698
Apple peels 0.3673 0.0886 0.0512
Coprinopsis challenged with bacteria Transcriptional response to Bacillus subtilis and Escherichia coli. Kombrink et al. 2018 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control 0.2359 0.0703 0.0406
Bsubtilis 0.3026 0.1972 0.1139
Ecoli 0.505 0.1905 0.11
Early development 1 Time series expression profiling of basidiospore and oidium germination Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
BS 0h 0.054 0.0472 0.0273
BS 4h 0.0763 0.099 0.0572
BS 8h 0.0552 0.0576 0.0333
BS 12h 0.131 0.0487 0.0281
Oidia 0 h 0.1601 0.1476 0.0852
Oidia 18 h 0.5052 0.1344 0.0776
Sclerotia 0.3278 0.2937 0.1695
Early development 2 Time series expression profiling of mycelial growth, light induction and fruiting body initiation. Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
DM 12h 0.2339 0.0432 0.025
DM 36h 0.0677 0.0626 0.0361
DM 60h 0.0976 0.0502 0.029
DM 84h 0.2748 0.0429 0.0248
DM 108h 0.3137 0.1037 0.0599
DM 132h 0.3907 0.1223 0.0706
DM 156hAE 0.154 0.1334 0.077
ELI1hAE 0.3787 0.0321 0.0185
ELI2hAE 0.39 0.4052 0.234
LI2hAE 0.444 0.5128 0.296
LI6hAE 0.5948 0.586 0.3383
LI12hAE 0.5597 0.2828 0.1633
LI18hAE 0.5802 0.3373 0.1948
LI 24hAE 0.4954 0.5444 0.3143
DM 156hAM 0.5695 0.2658 0.1535
ELI1hAM 0.5384 0.2337 0.1349
ELI2hAM 0.2048 0.1506 0.0869
LI2hAM 0.4492 0.6432 0.3713
LI6hAM 0.4494 0.1599 0.0923
LI12hAM 0.929 0.8051 0.4648
LI18hAM 2.4898 1.8473 1.0665
LI 24hAM 0.5447 0.376 0.2171
LI 24hHK 2.2639 1.6455 0.95
L/D 6h 2.6866 1.3502 0.7796
L/D 12h 2.169 1.2993 0.7502
L/D 18h 1.4034 1.019 0.5883
L/D 24h 1.5439 0.2934 0.1694
Fruiting body development RNA-Seq analysis of fruiting body development Krizsan et al. 2019 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Vegetative mycelium 2.2281 1.722 0.9942
Hyphal knots 0.8777 0.5628 0.325
Primordium 1 1.2761 0.7573 0.4372
Primordium 2 1.7789 0.288 0.1663
Young Fruiting body cap 7.2878 3.8639 2.2308
Younf fruiting body gill 0.0564 0.0472 0.0273
Young fruiting body stipe 0.4331 0.2427 0.1401
Mature fruiting body cap_gill 5.2625 1.7333 1.0007
Mature fruiting body stipe 4.705 0.5411 0.3124
Nitrogen sources (12h incubation) Expression profiling on diverse nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Complete medium - control 0.5625 0.1862 0.1075
NH4NO3 0.507 0.1457 0.0841
Proline 0.4646 0.1608 0.0928
Tryptophan 0.236 0.1482 0.0855
Isoleucin 0.2321 0.0577 0.0333
Arginine 0.2127 0.1186 0.0685
Metionine 0.4004 0.1098 0.0634
NaNO3 0.3789 0.0755 0.0436
Plant biomass (12h incubation) Expression profiling on diverse plant biomasses as carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 0.5625 0.1862 0.1075
Citrus peel 0.7912 0.379 0.2188
Poplar leaves 0.306 0.1478 0.0853
Typha leaves 0.5993 0.2763 0.1595
Overwintered Salix leaves 0.5444 0.1177 0.0679
Reed flowering 0.5525 0.1403 0.081
Tigernut 1.0148 0.1283 0.0741
Energy cane 0.5777 0.3201 0.1848
Guar gum 0.6681 0.624 0.3603
Apple peels 0.6596 0.3444 0.1988
Cellobiose 0.299 0.1846 0.1066
Corn stalk 0.3518 0.1412 0.0815
Horse manure 0.3727 0.0872 0.0503
Lignin 0.8058 0.4176 0.2411
Microcrystalline cellulose 0.6438 0.1467 0.0847
Oak leaves 0.3067 0.1088 0.0628
Pectin esterified 0.6864 0.0501 0.0289
Poplar sawdust 0.3916 0.028 0.0161
Wheat bran 0.7151 0.2823 0.163
Chlamydomonas reinhardtii 0.4858 0.1076 0.0621
Vertatryl alcohol 0.0648 0.0597 0.0345
Furfural 0.3352 0.1944 0.1122
Autoclaved mycelium 0.3042 0.0767 0.0443
Simple and complex carbon and nitrogen sources Expression profiling on diverse complex carbon and nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 1.3885 0.4173 0.241
Ribose 0.7175 0.339 0.1957
Mannose 1.0012 0.2839 0.2007
Fructose 1.0125 0.595 0.3435
Arabinose 0.4749 0.1141 0.0659
Xylose 0.9707 0.3697 0.2135
Galacturonic acid 0.6331 0.2467 0.1424
Rhamnogalacturonan 1.6925 0.8108 0.4681
Pectin esterified 1.3446 0.2818 0.1627
Polygalacturonic acid 1.2299 0.5563 0.3212
Sodium acetate 0.4341 0.1986 0.1146
No nitrogen 1.4565 0.377 0.2177
BSA 1.459 0.2557 0.1476
Glutamine 0.9484 0.2195 0.1267
No phosphate 1.9698 0.8572 0.4949
No carbon 0.8479 0.2014 0.1424
No sulphur 0.7886 0.2697 0.1557
Simple and complex carbon sources (12h incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 0.5625 0.1862 0.1075
Amylose 0.4628 0.2032 0.1173
Fucose 0.5309 0.123 0.071
Galactose 0.3767 0.0069 0.004
Lactose 0.3647 0.09 0.052
Maltose 0.5005 0.2204 0.1272
Mannitol 0.4544 0.2135 0.1232
Rhamnose 0.3696 0.0705 0.0407
Sorbitol 0.3168 0.1268 0.0732
Trehalose 0.5118 0.0783 0.0452
Glycerol 0.4353 0.1066 0.0616
Glucuronic acid 0.3162 0.0421 0.0243
Arabinan 0.6528 0.26 0.1501
Galactan 0.6661 0.1811 0.1045
Galactomannan 0.4757 0.1978 0.1142
Glucan 0.7742 0.1664 0.096
Xylan 0.3383 0.0751 0.0434
Xyloglucan 0.2875 0.0678 0.0391
Arabinogalactan 0.2331 0.1285 0.0742
Pectin 0.8096 0.5229 0.3019
Rhamnogalacturonan 1.0254 0.3995 0.2307
Polygalacturonic acid 0.2937 0.0633 0.0366
Mannan 0.5006 0.1821 0.1052
Amylopectin 1.1765 0.4261 0.246
Inulin 0.5196 0.228 0.1316
BSA 0.5271 0.1019 0.0588
Starvation induced by water agar transfer Expression profiling on starvation induced by transfer to water agar Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Control 0.0976 0.0502 0.029
2h WAT 0.2608 0.0087 0.0051
4h WAT 0.5512 0.4939 0.2852
8h WAT 0.2405 0.3032 0.1751
16h WAT 0.6431 0.6845 0.3952
24h WAT 0.4082 0.2749 0.1587
WAT hyphal knot -30h 0.0146 0.0253 0.0146
WAT hyphal knot -22h 0.109 0.0956 0.0552
WAT hyphal knot -15h 0.2952 0.291 0.168
WAT hyphal knot -7.5h 0.5098 0.5342 0.3084
WAT hyphal knot 0.1354 0.1748 0.1009
WAT hyphal knot +7.5h 0.268 0.0496 0.0286
Straw time series Time series expression profiling on straw as a carbon source Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 0.9469 0.4859 0.2805
Straw 3h 0.785 0.1703 0.0983
Straw 6h 1.0936 0.1362 0.0786
Straw 12h 0.7672 0.1665 0.0961
Straw 24h 0.5077 0.1485 0.0857
Stress conditions 1 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 0.4546 0.4763 0.275
Frost (-20C, 30min) 0.5374 0.0733 0.0423
Heat shock (47C, 2h) 0.1661 0.1007 0.0581
High CO2 0.8047 0.4489 0.2592
Drought (4% agar, 12h) 1.3385 0.5053 0.2917
Oxidative (1mM H2O2, 3h) 0.5062 0.5706 0.3294
Acidic (pH4, 3h) 0.295 0.262 0.1513
Alkaline (pH9, 3h) 0.3485 0.299 0.1726
Osmotic (sorbitol 2h) 0.5137 0.4449 0.2569
CongoRed (3h) 0.3477 0.2313 0.1336
Cobalt chloride control 0.887 0.3138 0.1812
Cobalt chloride 2mM 0.603 0.1358 0.0784
Stress conditions 2 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 0.1189 0.2059 0.1189
Cold stimulation 0.4291 0.3985 0.2301
Scratched surface 0.0644 0.0803 0.0464
Ca2+, 200mM, 24h 1.599 0.8231 0.4752
Cu2+, 2mM, 6h 4.1132 5.9343 3.4262
Voriconazole 0.3413 0.3101 0.1791
Trichoderma interaction, early 0.2755 0.2404 0.1388
Trichoderma interaction 60h 0 0 0
Cobalt chloride 2mM repeat 0.0891 0.1017 0.0587
Hypoxia 0.4862 0.323 0.1865
Hypoxia control 0.2932 0.2231 0.1288
Protoplastation control 1.103 0.4073 0.288
Protoplastation 3.5h 0.9388 0.3172 0.2243
Protoplastation 1.5h 2.3404 0.799 0.5649

General data

Systematic name -
Protein id CopciAB_1001182.T0
Description

Annotation summary

0 30 60 90 119

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
Pfam PF02816 Alpha-kinase family IPR004166 13 50

SignalP

Prediction Start End Score
No records

Transmembrane domains

Domain n Start End Length
No records

InterPro

Accession Description
IPR011009 Protein kinase-like domain superfamily
IPR004166 MHCK/EF2 kinase

GO

Go id Term Ontology
GO:0004674 protein serine/threonine kinase activity MF
GO:0005524 ATP binding MF
GO:0006468 protein phosphorylation BP

KEGG

KEGG Orthology
No records

EggNOG

COG category Description
No records

CAZy

Class Family Subfamily
No records

Transcription factor

Group
No records

Conservation of CopciAB_1001182 across fungi.

Arrow shows the origin of gene family containing CopciAB_1001182.

No data

Protein

Sequence id CopciAB_1001182.T0
Sequence >CopciAB_1001182.T0
MSSRQGRAAVHALTLFDVVIHSDDESYGLGGQGTSGLEELAARHQCNNICKALGLPDAKEFCKDLTVKAGEWEAL
SVSVPNVDLDPRRSPSPVTSDNGCSALTSLKHYGESDSSDSEED
Length 119

Coding

Sequence id CopciAB_1001182.T0
Sequence >CopciAB_1001182.T0
ATGTCGTCTCGCCAAGGGAGGGCAGCTGTTCACGCTCTTACGCTCTTCGATGTTGTGATCCACAGTGACGACGAG
AGCTATGGGCTCGGGGGCCAGGGAACGTCTGGACTCGAAGAGTTAGCCGCCCGGCACCAATGCAACAACATCTGT
AAAGCTCTGGGACTTCCGGATGCTAAAGAGTTTTGTAAGGACCTCACCGTGAAGGCTGGTGAATGGGAGGCGTTG
TCTGTGTCTGTTCCCAACGTAGACCTGGACCCCAGGCGCTCACCATCCCCTGTAACATCGGATAATGGCTGTTCT
GCTCTCACTAGTCTCAAACACTACGGGGAATCCGACAGTTCAGACTCGGAGGAAGATTGA
Length 360

Transcript

Sequence id CopciAB_1001182.T0
Sequence >CopciAB_1001182.T0
GTAAAGTACTTATAGAACGACCTAACTACTACTTCAACTGCACAGGTTTTGATTCTGAAAGCCTTCCCATGTCGT
CTCGCCAAGGGAGGGCAGCTGTTCACGCTCTTACGCTCTTCGATGTTGTGATCCACAGTGACGACGAGAGCTATG
GGCTCGGGGGCCAGGGAACGTCTGGACTCGAAGAGTTAGCCGCCCGGCACCAATGCAACAACATCTGTAAAGCTC
TGGGACTTCCGGATGCTAAAGAGTTTTGTAAGGACCTCACCGTGAAGGCTGGTGAATGGGAGGCGTTGTCTGTGT
CTGTTCCCAACGTAGACCTGGACCCCAGGCGCTCACCATCCCCTGTAACATCGGATAATGGCTGTTCTGCTCTCA
CTAGTCTCAAACACTACGGGGAATCCGACAGTTCAGACTCGGAGGAAGATTGATCTGCAAGCAATCCCTTGTCGT
CATGGATCTATTATCGCATCTCATATAACACATTTGTCCTTCATTGAGAGTACCTATCGAGTAGTATACATGGAT
GTACCTTACTCTACTCTCTTATATACGCTGGTTCGTCGACCG
Length 567

Gene

Sequence id CopciAB_1001182.T0
Sequence >CopciAB_1001182.T0
GTAAAGTACTTATAGAACGACCTAACTACTACTTCAACTGCACAGGTTTTGATTCTGAAAGCCTTCCCATGTCGT
CTCGCCAAGGGAGGGCAGCTGTTCACGCTCTTACGCTCTTCGATGTTGTGATCCACAGGTAAGTCAAGTGTACCA
TTGGCAAAAGCTGTGTTTGCTGACCTTACACCGAAATAACTCAGTGACGACGAGAGCTATGGGCTCGGGGGCCAG
GGAACGTCTGGACTCGAAGAGTTAGCCGCCCGGCACCAATGCAACAACATCTGTAAAGCTCTGGGACTTCCGGAT
GCTAAAGAGTTTTGTAAGGACCTCACCGTGAAGGCTGGTGAATGGGAGGCGTTGTCTGTGTCTGTTCCCAACGTA
GACCTGGACCCCAGGCGCTCACCATCCCCTGTAACATCGGATAATGGCTGTTCTGCTCTCACTAGTCTCAAACAC
TACGGGGAATCCGACAGTTCAGACTCGGAGGAAGATTGATCTGCAAGCAATCCCTTGTCGTCATGGATCTATTAT
CGCATCTCATATAACACATTTGTCCTTCATTGAGAGTACCTATCGAGTAGTATACATGGATGTACCTTACTCTAC
TCTCTTATATACGCTGGTTCGTCGACCG
Length 628