CopciAB_1001465
Coprinopsis cinerea A43mutB43mut pab1-1 #326

General data

Systematic name CopciAB_1001465 Strain Coprinopsis cinerea Okayama 7
Standard name - Synonyms
Uniprot id Functional description Protein kinase subdomain-containing protein PKL ccin3
Location scaffold_6:2617860..2619084 Strand +
Gene length (nt) 1225 Transcript length (nt) 1165
CDS length (nt) 987 Protein length (aa) 328

Reciprocal best hits in model fungi

Strain name Gene / Protein name

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
0

Expression

Name Summary Attribution Assay type
Carbon metabolism Transcriptional changes along alternative morphogenetic paths of C. cinerea Xie et al. 2020 RNA-Seq
Sample Mean cpm SD cpm Se of mean
sclerotia 0.1225 0.0258 0.0149
oidia 0.1501 0.1184 0.0684
vegetative_mycelium 0.2594 0.1866 0.1077
primordia 0.2518 0.223 0.1287
hyphal_knot 0.3763 0.0804 0.0464
young_fruiting_body 0.4161 0.22 0.127
Complex carbon sources 1 (long incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control - glucose 0.2734 0.2302 0.1329
Wheat bran 0.6164 0.3986 0.2301
Horse manure 0.3328 0.1481 0.0855
Oak leaves 0.3255 0.2849 0.1645
Hay 0.4396 0.0801 0.0462
Corn stalk 0.3396 0.3455 0.1995
Pectine 0.1696 0.0229 0.0132
Microcrystalline cellulose 0.096 0.0426 0.0246
Xylose 0.2884 0.1671 0.0965
Cellobiose 0.7416 0.206 0.1189
Lignin 0.1002 0.092 0.0531
Apple peels 0.2499 0.0622 0.0359
Coprinopsis challenged with bacteria Transcriptional response to Bacillus subtilis and Escherichia coli. Kombrink et al. 2018 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control 0.5949 0.116 0.067
Bsubtilis 0.8783 0.1951 0.1127
Ecoli 1.7022 0.0686 0.0396
Early development 1 Time series expression profiling of basidiospore and oidium germination Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
BS 0h 0 0 0
BS 4h 0.0209 0.0362 0.0209
BS 8h 0.0753 0.0762 0.044
BS 12h 0.0425 0.0384 0.0222
Oidia 0 h 0.8215 0.0596 0.0344
Oidia 18 h 0.0143 0.0247 0.0143
Sclerotia 0.2205 0.3818 0.2205
Early development 2 Time series expression profiling of mycelial growth, light induction and fruiting body initiation. Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
DM 12h 0.1845 0.1579 0.0911
DM 36h 0.1771 0.023 0.0133
DM 60h 0.2329 0.0925 0.0534
DM 84h 0.145 0.0236 0.0136
DM 108h 0.2301 0.0376 0.0217
DM 132h 0.2354 0.2131 0.123
DM 156hAE 0.4552 0.259 0.1495
ELI1hAE 0.3965 0.3779 0.2182
ELI2hAE 0.5305 0.414 0.239
LI2hAE 0.199 0.1309 0.0756
LI6hAE 0.352 0.0541 0.0312
LI12hAE 0.7838 0.3561 0.2056
LI18hAE 0.5755 0.2155 0.1244
LI 24hAE 0.7069 0.4152 0.2397
DM 156hAM 0.2378 0.0549 0.0317
ELI1hAM 0.3529 0.2611 0.1507
ELI2hAM 0.2277 0.0573 0.0331
LI2hAM 0.1804 0.078 0.045
LI6hAM 0.2499 0.1107 0.0639
LI12hAM 0.2244 0.2277 0.1314
LI18hAM 0.2336 0.2911 0.1681
LI 24hAM 0.2987 0.2516 0.1452
LI 24hHK 0.1009 0.1408 0.0813
L/D 6h 0.9527 0.5636 0.3254
L/D 12h 1.8149 0.6373 0.368
L/D 18h 0.7706 0.4645 0.2682
L/D 24h 0.5301 0.2102 0.1213
Fruiting body development RNA-Seq analysis of fruiting body development Krizsan et al. 2019 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Vegetative mycelium 0.1111 0.0471 0.0272
Hyphal knots 0.3135 0.0906 0.0523
Primordium 1 0.3326 0.1094 0.0632
Primordium 2 0.2037 0.0456 0.0263
Young Fruiting body cap 1.8241 1.3176 0.7607
Younf fruiting body gill 0.0887 0.1032 0.0596
Young fruiting body stipe 0.3569 0.1397 0.0806
Mature fruiting body cap_gill 2.4228 1.0038 0.5796
Mature fruiting body stipe 1.2376 0.2615 0.151
Nitrogen sources (12h incubation) Expression profiling on diverse nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Complete medium - control 0.2332 0.09 0.052
NH4NO3 0.1342 0.0788 0.0455
Proline 0.186 0.0696 0.0402
Tryptophan 0.0758 0.0172 0.0099
Isoleucin 0.0729 0.0109 0.0063
Arginine 0.0371 0.0184 0.0106
Metionine 0.1611 0.067 0.0387
NaNO3 0.235 0.1387 0.0801
Plant biomass (12h incubation) Expression profiling on diverse plant biomasses as carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 0.2332 0.09 0.052
Citrus peel 0.4446 0.292 0.1686
Poplar leaves 0.2112 0.0657 0.038
Typha leaves 0.3591 0.1545 0.0892
Overwintered Salix leaves 0.0982 0.0356 0.0206
Reed flowering 0.3126 0.3227 0.1863
Tigernut 0.2952 0.1995 0.1152
Energy cane 0.2617 0.098 0.0566
Guar gum 0.1861 0.1527 0.0881
Apple peels 0.4561 0.2171 0.1253
Cellobiose 0.2874 0.1221 0.0705
Corn stalk 0.3328 0.134 0.0774
Horse manure 0.4275 0.0909 0.0525
Lignin 0.5946 0.6273 0.3622
Microcrystalline cellulose 0.2756 0.1989 0.1148
Oak leaves 0.2784 0.2265 0.1308
Pectin esterified 0.379 0.1484 0.0857
Poplar sawdust 0.4378 0.051 0.0294
Wheat bran 0.3271 0.151 0.0872
Chlamydomonas reinhardtii 0.3169 0.062 0.0358
Vertatryl alcohol 0.3494 0.1373 0.0793
Furfural 0.0554 0.096 0.0554
Autoclaved mycelium 0.1617 0.0718 0.0414
Simple and complex carbon and nitrogen sources Expression profiling on diverse complex carbon and nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 0.1703 0.1165 0.0673
Ribose 0.0731 0.0691 0.0399
Mannose 0.121 0.1711 0.121
Fructose 0.1834 0.0236 0.0136
Arabinose 0.0358 0.0343 0.0198
Xylose 0.0754 0.025 0.0144
Galacturonic acid 0.1221 0.1069 0.0617
Rhamnogalacturonan 0.1777 0.1042 0.0602
Pectin esterified 0.2085 0.1253 0.0723
Polygalacturonic acid 0.1037 0.0158 0.0091
Sodium acetate 0.1046 0.1026 0.0592
No nitrogen 0.093 0.0378 0.0218
BSA 0.118 0.1035 0.0598
Glutamine 0.112 0.0322 0.0186
No phosphate 0.1093 0.07 0.0404
No carbon 0.1702 0.1583 0.112
No sulphur 0.0932 0.0713 0.0412
Simple and complex carbon sources (12h incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 0.2332 0.09 0.052
Amylose 0.524 0.1628 0.094
Fucose 0.5815 0.132 0.0762
Galactose 0.1867 0.1293 0.0746
Lactose 0.1195 0.0933 0.0539
Maltose 0.2369 0.059 0.0341
Mannitol 0.2339 0.209 0.1207
Rhamnose 0.2278 0.0377 0.0218
Sorbitol 0.3687 0.0218 0.0126
Trehalose 0.2184 0.0489 0.0282
Glycerol 0.1856 0.0461 0.0266
Glucuronic acid 0.4839 0.0217 0.0125
Arabinan 0.3285 0.0719 0.0415
Galactan 0.2831 0.1761 0.1017
Galactomannan 0.231 0.0635 0.0367
Glucan 0.4374 0.3364 0.1942
Xylan 0.304 0.0563 0.0325
Xyloglucan 0.2292 0.1398 0.0807
Arabinogalactan 0.3144 0.154 0.0889
Pectin 0.4262 0.1498 0.0865
Rhamnogalacturonan 0.5139 0.3047 0.1759
Polygalacturonic acid 0.3016 0.0333 0.0192
Mannan 0.1719 0.0725 0.0418
Amylopectin 0.336 0.2039 0.1177
Inulin 0.1994 0.1727 0.0997
BSA 0.1527 0.1329 0.0767
Starvation induced by water agar transfer Expression profiling on starvation induced by transfer to water agar Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Control 0.2329 0.0925 0.0534
2h WAT 0.2405 0.2277 0.1314
4h WAT 0.1534 0.1406 0.0812
8h WAT 0.526 0.2335 0.1348
16h WAT 0.3986 0.2336 0.1348
24h WAT 0.6382 0.2994 0.1728
WAT hyphal knot -30h 0.3303 0.1088 0.0628
WAT hyphal knot -22h 0.3931 0.1995 0.1152
WAT hyphal knot -15h 0.3369 0.2301 0.1328
WAT hyphal knot -7.5h 0.9504 0.0447 0.0258
WAT hyphal knot 0.5695 0.1631 0.0942
WAT hyphal knot +7.5h 0.1817 0.1934 0.1116
Straw time series Time series expression profiling on straw as a carbon source Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 0.4535 0.102 0.0589
Straw 3h 0.5653 0.1343 0.0775
Straw 6h 0.7714 0.4166 0.2406
Straw 12h 0.2548 0.1018 0.0588
Straw 24h 0.3288 0.2008 0.1159
Stress conditions 1 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 0.8422 0.5485 0.3167
Frost (-20C, 30min) 0.2723 0.0572 0.033
Heat shock (47C, 2h) 0.5001 0.4012 0.2317
High CO2 0.1671 0.0896 0.0517
Drought (4% agar, 12h) 0.0988 0.1025 0.0592
Oxidative (1mM H2O2, 3h) 0.5569 0.351 0.2026
Acidic (pH4, 3h) 0.7662 0.3675 0.2122
Alkaline (pH9, 3h) 0.4024 0.1095 0.0632
Osmotic (sorbitol 2h) 0.1786 0.0979 0.0565
CongoRed (3h) 1.1405 0.6887 0.3976
Cobalt chloride control 0.2606 0.0765 0.0442
Cobalt chloride 2mM 0.2305 0.1408 0.0813
Stress conditions 2 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 0.2119 0.2081 0.1202
Cold stimulation 0.1867 0.1873 0.1081
Scratched surface 0.2526 0.0496 0.0286
Ca2+, 200mM, 24h 0.511 0.2614 0.1509
Cu2+, 2mM, 6h 0.0594 0.1029 0.0594
Voriconazole 1.2342 0.7536 0.4351
Trichoderma interaction, early 0.3259 0.0911 0.0526
Trichoderma interaction 60h 0.2945 0.5101 0.2945
Cobalt chloride 2mM repeat 0.3903 0.3802 0.2195
Hypoxia 0.2464 0.1567 0.0905
Hypoxia control 0.1231 0.1131 0.0653
Protoplastation control 0.9679 0.2448 0.1731
Protoplastation 3.5h 1.1632 1.645 1.1632
Protoplastation 1.5h 1.2707 1.6553 1.1705

General data

Systematic name -
Protein id CopciAB_1001465.T0
Description Protein kinase subdomain-containing protein PKL ccin3

Annotation summary

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
No records

SignalP

Prediction Start End Score
No records

Transmembrane domains

Domain n Start End Length
No records

InterPro

Accession Description
IPR011009 Protein kinase-like domain superfamily

GO

Go id Term Ontology
No records

KEGG

KEGG Orthology
No records

EggNOG

COG category Description
G Protein kinase subdomain-containing protein PKL ccin3

CAZy

Class Family Subfamily
No records

Transcription factor

Group
No records

Conservation of CopciAB_1001465 across fungi.

Arrow shows the origin of gene family containing CopciAB_1001465.

No data

Protein

Sequence id CopciAB_1001465.T0
Sequence >CopciAB_1001465.T0
MQQFAKLRINNCAIVDGKPTAITLEVSPSHPGAIWYRERRGGPPPPNWNSTDISDAEGELELTLLDRISEGRIGI
TYVAKVVSAKRGNVDLRATLPETVCIKFAKPEFCRGLAREAWFYEQLESCQGTCIPNFYGFFSSSMREQACSLNL
EFTPWTTREHHYQEDTDSPPQDNLPSADWLTDDLTPHYAGFESPHEDPSGYQQNSPWYRWNRDADNPTFSVLILE
LLGEPCTGERGIDVKEAIEEALDDIMAQGVVHGNISAWNILSIRDPINSSRCSRHNAVHSWRVIDFDGCAKVDIE
NLTDYGTMMLSIGREALHRDNGFKLLSK
Length 328

Coding

Sequence id CopciAB_1001465.T0
Sequence >CopciAB_1001465.T0
ATGCAACAATTCGCAAAGCTGCGCATCAATAACTGCGCTATCGTCGATGGCAAGCCGACAGCGATCACCCTCGAA
GTCTCTCCTTCGCATCCGGGCGCAATCTGGTACAGAGAACGTCGCGGTGGACCACCTCCCCCAAATTGGAACTCC
ACAGACATTTCCGACGCCGAAGGAGAGCTGGAGCTCACCCTCCTCGACCGCATCTCGGAAGGCCGCATAGGTATC
ACCTACGTGGCGAAAGTCGTCTCCGCGAAGCGAGGCAACGTGGATTTACGAGCGACACTTCCAGAGACGGTCTGC
ATCAAGTTTGCGAAGCCAGAGTTCTGTCGGGGGCTAGCCCGTGAGGCCTGGTTCTACGAGCAACTGGAATCATGC
CAGGGCACATGCATCCCGAATTTCTACGGATTCTTTTCATCGTCCATGAGAGAGCAAGCCTGTTCTCTAAACCTC
GAATTCACCCCATGGACCACGAGGGAACATCATTACCAGGAAGACACGGACTCACCCCCCCAGGACAATCTTCCT
TCTGCGGACTGGCTAACTGACGACCTCACGCCGCACTACGCAGGCTTTGAGTCACCCCACGAAGACCCATCTGGC
TACCAGCAAAACTCTCCGTGGTACAGATGGAATCGCGATGCTGACAACCCTACATTCAGTGTCCTCATCCTCGAG
CTGTTGGGGGAGCCCTGTACTGGCGAAAGGGGGATCGACGTAAAAGAGGCGATTGAAGAGGCGTTAGACGACATC
ATGGCACAAGGAGTCGTCCACGGAAACATTTCGGCTTGGAACATCCTATCCATCCGCGACCCAATCAACAGCAGC
AGGTGCTCCCGACACAACGCTGTTCATTCTTGGAGAGTCATTGACTTTGACGGATGTGCGAAGGTCGACATTGAG
AACCTGACCGACTATGGAACCATGATGCTTTCAATCGGGAGGGAGGCCCTCCATAGGGACAATGGATTTAAGCTT
TTATCGAAGTAA
Length 987

Transcript

Sequence id CopciAB_1001465.T0
Sequence >CopciAB_1001465.T0
AGCCAACGTCGAACTAGTACGGCACCTGGTCCTTCCCACTGCCCAACCTCTCCCCGCATAGCGACCACCTCTTAC
GACGAATGCAACAATTCGCAAAGCTGCGCATCAATAACTGCGCTATCGTCGATGGCAAGCCGACAGCGATCACCC
TCGAAGTCTCTCCTTCGCATCCGGGCGCAATCTGGTACAGAGAACGTCGCGGTGGACCACCTCCCCCAAATTGGA
ACTCCACAGACATTTCCGACGCCGAAGGAGAGCTGGAGCTCACCCTCCTCGACCGCATCTCGGAAGGCCGCATAG
GTATCACCTACGTGGCGAAAGTCGTCTCCGCGAAGCGAGGCAACGTGGATTTACGAGCGACACTTCCAGAGACGG
TCTGCATCAAGTTTGCGAAGCCAGAGTTCTGTCGGGGGCTAGCCCGTGAGGCCTGGTTCTACGAGCAACTGGAAT
CATGCCAGGGCACATGCATCCCGAATTTCTACGGATTCTTTTCATCGTCCATGAGAGAGCAAGCCTGTTCTCTAA
ACCTCGAATTCACCCCATGGACCACGAGGGAACATCATTACCAGGAAGACACGGACTCACCCCCCCAGGACAATC
TTCCTTCTGCGGACTGGCTAACTGACGACCTCACGCCGCACTACGCAGGCTTTGAGTCACCCCACGAAGACCCAT
CTGGCTACCAGCAAAACTCTCCGTGGTACAGATGGAATCGCGATGCTGACAACCCTACATTCAGTGTCCTCATCC
TCGAGCTGTTGGGGGAGCCCTGTACTGGCGAAAGGGGGATCGACGTAAAAGAGGCGATTGAAGAGGCGTTAGACG
ACATCATGGCACAAGGAGTCGTCCACGGAAACATTTCGGCTTGGAACATCCTATCCATCCGCGACCCAATCAACA
GCAGCAGGTGCTCCCGACACAACGCTGTTCATTCTTGGAGAGTCATTGACTTTGACGGATGTGCGAAGGTCGACA
TTGAGAACCTGACCGACTATGGAACCATGATGCTTTCAATCGGGAGGGAGGCCCTCCATAGGGACAATGGATTTA
AGCTTTTATCGAAGTAAACTTTCGATGTCGAGTTGGTGTACTTGTTTATAACGATAGCAGAGTAACGGCCAACCA
ATCGAGGCTGTCTTGGTATTTCCACGCCCATTCGTCTTTC
Length 1165

Gene

Sequence id CopciAB_1001465.T0
Sequence >CopciAB_1001465.T0
AGCCAACGTCGAACTAGTACGGCACCTGGTCCTTCCCACTGCCCAACCTCTCCCCGCATAGCGACCACCTCTTAC
GACGAATGCAACAATTCGCAAAGCTGCGCATCAATAACTGCGCTATCGTCGATGGCAAGCCGACAGCGATCACCC
TCGAAGTCTCTCCTTCGCATCCGGGCGCAATCTGGTACAGAGAACGTCGCGGTGGACCACCTCCCCCAAATTGGA
ACTCCACAGACATTTCCGACGCCGAAGGAGAGCTGGAGCTCACCCTCCTCGACCGCATCTCGGAAGGCCGCATAG
GTATCACCTACGTGGCGAAAGTCGTCTCCGCGAAGCGAGGCAACGTGGATTTACGAGCGACACTTCCAGAGACGG
TCTGCATCAAGTTTGCGAAGCCAGAGTTCTGTCGGGGGCTAGCCCGTGAGGCCTGGTTCTACGAGCAACTGGAAT
CATGCCAGGGCACATGCATCCCGAATTTCTACGGATTCTTTTCATCGTCCATGAGAGAGCAAGCCTGTTCTCTAA
ACCTCGAATTCACCCCATGGACCACGAGGGAACATCATTACCAGGAAGACACGGACTCACCCCCCCAGGACAATC
TTCCTTCTGCGGACTGGCTAACTGACGACCTCACGCCGCACTACGCAGGCTTTGAGTCACCCCACGAAGACCCAT
CTGGCTACCAGCAAAACTCTCCGTGGTACAGATGGAATCGCGATGCTGACAACCCTACATTCAGTGTCCTCATCC
TCGAGCTGTTGGGGGAGCCCTGTACTGGCGAAAGGGGGATCGACGTAAAGTAAGTCTTGACACTCTCATAATCCC
GAATAATTATTTAGGCAACGACTGTGTTGTACAGAGAGGCGATTGAAGAGGCGTTAGACGACATCATGGCACAAG
GAGTCGTCCACGGAAACATTTCGGCTTGGAACATCCTATCCATCCGCGACCCAATCAACAGCAGCAGGTGCTCCC
GACACAACGCTGTTCATTCTTGGAGAGTCATTGACTTTGACGGATGTGCGAAGGTCGACATTGAGAACCTGACCG
ACTATGGAACCATGATGCTTTCAATCGGGAGGGAGGCCCTCCATAGGGACAATGGATTTAAGCTTTTATCGAAGT
AAACTTTCGATGTCGAGTTGGTGTACTTGTTTATAACGATAGCAGAGTAACGGCCAACCAATCGAGGCTGTCTTG
GTATTTCCACGCCCATTCGTCTTTC
Length 1225