CopciAB_1001467
Coprinopsis cinerea A43mutB43mut pab1-1 #326

General data

Systematic name CopciAB_1001467 Strain Coprinopsis cinerea Okayama 7
Standard name - Synonyms
Uniprot id Functional description
Location scaffold_6:2672871..2674324 Strand +
Gene length (nt) 1454 Transcript length (nt) 1277
CDS length (nt) 474 Protein length (aa) 157

Reciprocal best hits in model fungi

Strain name Gene / Protein name

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
0

Expression

Name Summary Attribution Assay type
Carbon metabolism Transcriptional changes along alternative morphogenetic paths of C. cinerea Xie et al. 2020 RNA-Seq
Sample Mean cpm SD cpm Se of mean
sclerotia 0.0322 0.0558 0.0322
oidia 0.1381 0.1811 0.1046
vegetative_mycelium 0.3897 0.5523 0.3189
primordia 0.165 0.2857 0.165
hyphal_knot 0.0705 0.0715 0.0413
young_fruiting_body 0 0 0
Complex carbon sources 1 (long incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control - glucose 0.3613 0.1852 0.1069
Wheat bran 1.0164 0.4236 0.2445
Horse manure 0.4131 0.296 0.1709
Oak leaves 0.1653 0.1656 0.0956
Hay 0.17 0.1502 0.0867
Corn stalk 0.4898 0.1431 0.0826
Pectine 0.4571 0.3334 0.1925
Microcrystalline cellulose 0.3004 0.261 0.1507
Xylose 0.2932 0.3039 0.1755
Cellobiose 0.1752 0.0894 0.0516
Lignin 0.0698 0.0623 0.036
Apple peels 0.1377 0.0314 0.0181
Coprinopsis challenged with bacteria Transcriptional response to Bacillus subtilis and Escherichia coli. Kombrink et al. 2018 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control 0.3301 0.0454 0.0262
Bsubtilis 0.3396 0.1385 0.08
Ecoli 0.1691 0.1237 0.0714
Early development 1 Time series expression profiling of basidiospore and oidium germination Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
BS 0h 0.0499 0.0865 0.0499
BS 4h 0 0 0
BS 8h 0.0681 0.074 0.0427
BS 12h 0 0 0
Oidia 0 h 0.9849 0.5486 0.3167
Oidia 18 h 0.1689 0.0869 0.0502
Sclerotia 0 0 0
Early development 2 Time series expression profiling of mycelial growth, light induction and fruiting body initiation. Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
DM 12h 0.2675 0.0731 0.0422
DM 36h 0.2374 0.0335 0.0193
DM 60h 0.2795 0.1786 0.1031
DM 84h 0.3805 0.256 0.1478
DM 108h 0.5652 0.4266 0.2463
DM 132h 0.3968 0.2716 0.1568
DM 156hAE 0.5604 0.2606 0.1505
ELI1hAE 0.3803 0.6587 0.3803
ELI2hAE 0.4031 0.3229 0.1864
LI2hAE 0.3955 0.3511 0.2027
LI6hAE 0.2732 0.2414 0.1394
LI12hAE 0.4991 0.4322 0.2496
LI18hAE 0.7024 0.6318 0.3648
LI 24hAE 0.3847 0.5211 0.3009
DM 156hAM 0.4306 0.3406 0.1967
ELI1hAM 0.9688 0.1675 0.0967
ELI2hAM 1.0635 0.651 0.3758
LI2hAM 0.7518 0.4813 0.2779
LI6hAM 0.3673 0.2517 0.1453
LI12hAM 0.4799 0.4572 0.264
LI18hAM 0.6412 0.6856 0.3958
LI 24hAM 0 0 0
LI 24hHK 0.505 0.3183 0.1838
L/D 6h 0.3191 0.3164 0.1827
L/D 12h 0.5406 0.0466 0.0269
L/D 18h 0.0823 0.0921 0.0532
L/D 24h 0.1407 0.1014 0.0585
Fruiting body development RNA-Seq analysis of fruiting body development Krizsan et al. 2019 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Vegetative mycelium 0.275 0.0331 0.0191
Hyphal knots 0.1483 0.0958 0.0553
Primordium 1 0.1224 0.1165 0.0673
Primordium 2 0.2125 0.1718 0.0992
Young Fruiting body cap 0.1337 0.1159 0.0669
Younf fruiting body gill 0.0911 0.0895 0.0517
Young fruiting body stipe 0.1277 0.1352 0.0781
Mature fruiting body cap_gill 0.0618 0.0579 0.0334
Mature fruiting body stipe 0.2444 0.2777 0.1603
Nitrogen sources (12h incubation) Expression profiling on diverse nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Complete medium - control 0.7859 0.354 0.2044
NH4NO3 0.4804 0.1875 0.1082
Proline 0.2286 0.1804 0.1041
Tryptophan 0.1505 0.1402 0.081
Isoleucin 0.3279 0.1217 0.0703
Arginine 0.237 0.0327 0.0189
Metionine 0.3357 0.3168 0.1829
NaNO3 0.3652 0.2048 0.1182
Plant biomass (12h incubation) Expression profiling on diverse plant biomasses as carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 0.7859 0.354 0.2044
Citrus peel 0.3231 0.2859 0.1651
Poplar leaves 0.3309 0.2216 0.1279
Typha leaves 0.3643 0.1088 0.0628
Overwintered Salix leaves 0.5718 0.1942 0.1121
Reed flowering 0.5504 0.1884 0.1088
Tigernut 0.2536 0.0885 0.0511
Energy cane 0.4958 0.3852 0.2224
Guar gum 0.4474 0.0583 0.0337
Apple peels 0.7692 0.4293 0.2479
Cellobiose 0.5811 0.0754 0.0436
Corn stalk 0.3456 0.2493 0.1439
Horse manure 0.62 0.5107 0.2949
Lignin 0.2958 0.247 0.1426
Microcrystalline cellulose 0.2229 0.2141 0.1236
Oak leaves 0.6811 0.1574 0.0909
Pectin esterified 0.374 0.2159 0.1246
Poplar sawdust 0.6325 0.4005 0.2312
Wheat bran 0.4743 0.3736 0.2157
Chlamydomonas reinhardtii 0.5505 0.1807 0.1043
Vertatryl alcohol 0.2093 0.137 0.0791
Furfural 0.0615 0.0647 0.0374
Autoclaved mycelium 0.4863 0.0994 0.0574
Simple and complex carbon and nitrogen sources Expression profiling on diverse complex carbon and nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 0.6 0.355 0.205
Ribose 1.0666 0.2132 0.1231
Mannose 0.491 0.1151 0.0814
Fructose 1.1159 0.217 0.1253
Arabinose 0.6545 0.666 0.3845
Xylose 0.7982 0.5039 0.2909
Galacturonic acid 0.7216 0.4395 0.2538
Rhamnogalacturonan 0.2953 0.203 0.1172
Pectin esterified 0.9521 0.5337 0.3081
Polygalacturonic acid 1.1631 0.326 0.1882
Sodium acetate 0.6638 0.3141 0.1813
No nitrogen 0.7146 0.1904 0.1099
BSA 0.6803 0.4014 0.2318
Glutamine 0.6793 0.5073 0.2929
No phosphate 0.4572 0.0893 0.0515
No carbon 0.5085 0.187 0.1323
No sulphur 0.299 0.2166 0.125
Simple and complex carbon sources (12h incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 0.7859 0.354 0.2044
Amylose 0.4543 0.169 0.0976
Fucose 0.1609 0.0645 0.0373
Galactose 0.1919 0.0651 0.0376
Lactose 0.2298 0.1237 0.0714
Maltose 0.1767 0.1973 0.1139
Mannitol 0.4498 0.1802 0.104
Rhamnose 0.2794 0.1149 0.0663
Sorbitol 0.5094 0.2232 0.1288
Trehalose 0.6339 0.222 0.1282
Glycerol 0.3313 0.2371 0.1369
Glucuronic acid 0.279 0.0766 0.0442
Arabinan 0.6685 0.3611 0.2085
Galactan 0.4079 0.15 0.0866
Galactomannan 0.6009 0.4216 0.2434
Glucan 0.4591 0.3583 0.2069
Xylan 0.2112 0.1409 0.0813
Xyloglucan 0.3302 0.0826 0.0477
Arabinogalactan 0.4448 0.0357 0.0206
Pectin 0.4595 0.2295 0.1325
Rhamnogalacturonan 0.1143 0.1348 0.0778
Polygalacturonic acid 0.6142 0.2803 0.1618
Mannan 0.4782 0.1433 0.0827
Amylopectin 0.3168 0.1508 0.0871
Inulin 0.1333 0.0383 0.0221
BSA 0.2723 0.2508 0.1448
Starvation induced by water agar transfer Expression profiling on starvation induced by transfer to water agar Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Control 0.2795 0.1786 0.1031
2h WAT 0.6668 0.4965 0.2867
4h WAT 0.4702 0.4031 0.2327
8h WAT 0.3034 0.2028 0.1171
16h WAT 0.4269 0.089 0.0514
24h WAT 0.5774 0.4692 0.2709
WAT hyphal knot -30h 0.5717 0.4848 0.2799
WAT hyphal knot -22h 0.544 0.3223 0.1861
WAT hyphal knot -15h 1.2868 1.0097 0.583
WAT hyphal knot -7.5h 0.2247 0.0823 0.0475
WAT hyphal knot 0.5769 0.1913 0.1104
WAT hyphal knot +7.5h 0.6161 0.3979 0.2298
Straw time series Time series expression profiling on straw as a carbon source Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 0.5784 0.3587 0.2071
Straw 3h 0.345 0.1375 0.0794
Straw 6h 0.4395 0.3186 0.184
Straw 12h 0.4635 0.2468 0.1425
Straw 24h 0.3847 0.3685 0.2128
Stress conditions 1 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 0.4577 0.2612 0.1508
Frost (-20C, 30min) 0.4172 0.0719 0.0415
Heat shock (47C, 2h) 1.5353 0.4591 0.2651
High CO2 0.0993 0.172 0.0993
Drought (4% agar, 12h) 0.3269 0.3742 0.2161
Oxidative (1mM H2O2, 3h) 0.4555 0.4751 0.2743
Acidic (pH4, 3h) 0.3973 0.393 0.2269
Alkaline (pH9, 3h) 0.325 0.4129 0.2384
Osmotic (sorbitol 2h) 0.2003 0.2037 0.1176
CongoRed (3h) 0.5045 0.1899 0.1096
Cobalt chloride control 0.3665 0.1807 0.1043
Cobalt chloride 2mM 0.1733 0.0721 0.0416
Stress conditions 2 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 0.0498 0.0863 0.0498
Cold stimulation 0.7976 0.7131 0.4117
Scratched surface 0.8167 0.2431 0.1404
Ca2+, 200mM, 24h 0.2606 0.2406 0.1389
Cu2+, 2mM, 6h 0.7031 0.5128 0.2961
Voriconazole 0.506 0.4593 0.2652
Trichoderma interaction, early 0.7955 0.4311 0.2489
Trichoderma interaction 60h 3.9799 2.7471 1.5861
Cobalt chloride 2mM repeat 0.768 0.9085 0.5245
Hypoxia 1.057 0.3177 0.1834
Hypoxia control 0.7188 0.5884 0.3397
Protoplastation control 0.5485 0.161 0.1138
Protoplastation 3.5h 1.3218 1.5952 1.128
Protoplastation 1.5h 0 0 0

General data

Systematic name -
Protein id CopciAB_1001467.T0
Description

Annotation summary

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
No records

SignalP

Prediction Start End Score
No records

Transmembrane domains

Domain n Start End Length
No records

InterPro

Accession Description
No records

GO

Go id Term Ontology
No records

KEGG

KEGG Orthology
No records

EggNOG

COG category Description
No records

CAZy

Class Family Subfamily
No records

Transcription factor

Group
No records

Conservation of CopciAB_1001467 across fungi.

Arrow shows the origin of gene family containing CopciAB_1001467.

No data

Protein

Sequence id CopciAB_1001467.T0
Sequence >CopciAB_1001467.T0
MVDSEMTTDDVNHTWVCTSTDLVEKLLSYGLDDNLVTRILDNPELYTKQEHYEHSYFMKRVVCHDDVNTTYKRPR
QGRLVDYNYAEALEVLSGFMQRKASSLRRQRTKELQYFHNLTRVPIDDSQYPQASDSLALLLLELVRRVTTGKGS
VGSIGRE
Length 157

Coding

Sequence id CopciAB_1001467.T0
Sequence >CopciAB_1001467.T0
ATGGTCGATTCAGAGATGACGACGGACGACGTGAACCACACCTGGGTTTGCACGTCAACTGACCTCGTCGAGAAA
CTCCTCTCGTACGGCCTAGATGACAATTTGGTTACCAGGATTCTGGACAATCCTGAACTTTACACCAAACAAGAA
CACTACGAGCATTCCTACTTCATGAAGCGTGTGGTATGCCACGACGATGTCAATACCACGTATAAACGGCCACGG
CAAGGACGTCTCGTTGATTACAACTACGCCGAAGCTCTCGAAGTTCTCAGCGGCTTCATGCAGCGCAAGGCGTCG
TCTCTTCGAAGGCAGCGGACGAAGGAACTGCAGTATTTTCACAACTTGACGCGTGTCCCAATTGATGACTCGCAG
TATCCCCAGGCTTCAGATAGCCTTGCGCTTCTGCTTCTCGAGCTAGTGCGCAGGGTAACAACTGGAAAAGGGTCT
GTTGGGTCTATTGGCCGTGAATGA
Length 474

Transcript

Sequence id CopciAB_1001467.T0
Sequence >CopciAB_1001467.T0
AACGCTTCTCTAGCCAATGGTCGATTCAGAGATGACGACGGACGACGTGAACCACACCTGGGTTTGCACGTCAAC
TGACCTCGTCGAGAAACTCCTCTCGTACGGCCTAGATGACAATTTGGTTACCAGGATTCTGGACAATCCTGAACT
TTACACCAAACAAGAACACTACGAGCATTCCTACTTCATGAAGCGTGTGGTATGCCACGACGATGTCAATACCAC
GTATAAACGGCCACGGCAAGGACGTCTCGTTGATTACAACTACGCCGAAGCTCTCGAAGTTCTCAGCGGCTTCAT
GCAGCGCAAGGCGTCGTCTCTTCGAAGGCAGCGGACGAAGGAACTGCAGTATTTTCACAACTTGACGCGTGTCCC
AATTGATGACTCGCAGTATCCCCAGGCTTCAGATAGCCTTGCGCTTCTGCTTCTCGAGCTAGTGCGCAGGGTAAC
AACTGGAAAAGGGTCTGTTGGGTCTATTGGCCGTGAATGAATACAAAATACTGTGCTCCGACCTCAATGAAGATA
GGGTTACAGAACCGGTGACGATATCAGAGTTATGTCCTTGGATGGACGACGATCCCATTCTTCCTCCTCAATTTG
AGAAACTAAAAGTGGAACGCAGCGTTGTGATGGGCACCAGTGCGTTCATGAGCCATCGGTTTCTCTCGGACTACC
CCACCGAATTTCATGATGCAATACATGATATGGAGTCGCTCCTTTAGGCTTTGGGTGGTCTTGCGCCTCGCCCTC
ACCTGTGATGGCCCCGGAGGAAGGACTCACGCTGAAGCTTGTGACGAGATCTCCTGTAAAGCGAATTTACGCCGC
CATTGGCTCTTCGAAGCCTCCAAGCAGGAAATCGGGAAGATCAAGTCGAGGTTGTTCAAAGGGGCCTGCGAGTAT
GATACTCACTGGCAAGTAGTGGAAGACGAAATCCACCCCTATGTCCACCCCGATTTCAAGCCTTTAACCAGGCTC
GTCAATGATTGGTGGGACAACCTCTGAAAAGCCTTCAAGCCCGACGGCGACATACTTTATCGACATTATCCTGTT
TCAGCGTTTCGTCACTCCCTGGGTAACGCTCTCAAATCACTCCCAGACATGGAAGAGCCCTATGCGAAAGAGGGG
TTGTAGCAGCAAGGAGAGTTCATTGCTGAACTTCATCAGCGGGATCGTCTCCCCAAGGAGAATACGAATAAGCCG
CCCCTTGGCCGCCCCTCCGTTCCATTGAAATCTAAATCTTCCCCAATTCTTCGTCAATGTTGAATTGGATTACAA
TC
Length 1277

Gene

Sequence id CopciAB_1001467.T0
Sequence >CopciAB_1001467.T0
AACGCTTCTCTAGCCAATGGTCGATTCAGAGATGACGACGGACGACGTGAACCACACCTGGGTTTGCACGTCAAC
TGACCTCGTCGAGAAACTCCTCTCGTACGGCCTAGATGACAATTTGGTTACCAGGATTCTGGACAATCCTGAACT
TTACACCAAACAAGAACACTACGAGCATTCCTACTTCATGAAGCGTGTGGTATGCCACGACGATGTCAATACCAC
GTATAAACGGCCACGGCAAGGACGTCTCGTTGATTACAACTACGCCGAAGCTCTCGAAGTTCTCAGCGGCTTCAT
GCAGCGCAAGGCGTCGTCTCTTCGAAGGCAGCGGACGAAGGAACTGCAGTATTTTCACAACTTGACGCGTGTCCC
AATTGATGACTCGCAGTATCCCCAGGCTTCAGATAGCCTTGCGCTTCTGCTTCTCGAGCTAGTGCGCAGGGTAAC
AACTGGAAAAGGGTCTGTTGGGTCTATTGGCCGTGAATGAATACAAAATACTGTGCTCCGACCTCAATGTACGTT
CCATATCCTACTGCGAGGTGGTCTTGTCCTGATCCGTTGGCACTTGGCAGGAAGATAGGGTTACAGAACCGGTGA
CGATATCAGAGTTATGTCCTTGGATGGACGACGATGTGAATGTTTCAGTTAGACGCCCATCCTATCATACTGATT
GACCGATGCTCTTTGTGTTTCAGCCCATTCTTCCTCCTCAATTTGAGAAACTAAAAGTGGAACGCAGCGTTGTGA
TGGTAGCTATTAGCTGTGCGTCTGCACCTCTCCAATGGTAAACTCAATCTCCATTCTAGGGCACCAGTGCGTTCA
TGAGCCATCGGTTTCTCTCGGACTACCCCACCGAATTTCATGATGCAATACATGATATGGAGTCGCTCCTTTAGG
CTTTGGGTGGTCTTGCGCCTCGCCCTCACCTGTGATGGCCCCGGAGGAAGGACTCACGCTGAAGCTTGTGACGAG
ATCTCCTGTAAAGCGAATTTACGCCGCCATTGGCTCTTCGAAGCCTCCAAGCAGGAAATCGGGAAGATCAAGTCG
AGGTTGTTCAAAGGGGCCTGCGAGTATGATACTCACTGGCAAGTAGTGGAAGACGAAATCCACCCCTATGTCCAC
CCCGATTTCAAGCCTTTAACCAGGCTCGTCAATGATTGGTGGGACAACCTCTGAAAAGCCTTCAAGCCCGACGGC
GACATACTTTATCGACATTATCCTGTTTCAGCGTTTCGTCACTCCCTGGGTAACGCTCTCAAATCACTCCCAGAC
ATGGAAGAGCCCTATGCGAAAGAGGGGTTGTAGCAGCAAGGAGAGTTCATTGCTGAACTTCATCAGCGGGATCGT
CTCCCCAAGGAGAATACGAATAAGCCGCCCCTTGGCCGCCCCTCCGTTCCATTGAAATCTAAATCTTCCCCAATT
CTTCGTCAATGTTGAATTGGATTACAATC
Length 1454