CopciAB_244680
Coprinopsis cinerea A43mutB43mut pab1-1 #326

General data

Systematic name CopciAB_244680 Strain Coprinopsis cinerea Okayama 7
Standard name - Synonyms 244680
Uniprot id Functional description
Location scaffold_4:3349452..3350641 Strand +
Gene length (nt) 1190 Transcript length (nt) 1131
CDS length (nt) 987 Protein length (aa) 328

Reciprocal best hits in model fungi

Strain name Gene / Protein name

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
Hypsizygus marmoreus strain 51987-8 Hypma_RDB17070 40.1 5.406E-72 245
Pleurotus ostreatus PC15 PleosPC15_2_168712 39.2 3.416E-63 219
Agrocybe aegerita Agrae_CAA7269004 37.1 9.184E-63 218
Pleurotus ostreatus PC9 PleosPC9_1_60396 38.5 3.582E-62 216
Pleurotus eryngii ATCC 90797 Pleery1_1493504 36.3 6.803E-55 195
Grifola frondosa Grifr_OBZ72607 48.8 3.563E-32 128
Flammulina velutipes Flave_chr11AA01385 29.4 5.716E-17 82
Lentinula edodes B17 Lened_B_1_1_7380 26.5 6.508E-12 66
Lentinula edodes NBRC 111202 Lenedo1_1173387 26.5 8.225E-12 66
Schizophyllum commune H4-8 Schco3_2495395 29.4 1.936E-11 65

Expression

Name Summary Attribution Assay type
Carbon metabolism Transcriptional changes along alternative morphogenetic paths of C. cinerea Xie et al. 2020 RNA-Seq
Sample Mean cpm SD cpm Se of mean
sclerotia 1.5496 0.5695 0.3288
oidia 2.4416 0.6479 0.374
vegetative_mycelium 1.3538 0.385 0.2223
primordia 2.2884 0.5949 0.3435
hyphal_knot 0.9262 0.364 0.2101
young_fruiting_body 2.4246 0.7499 0.433
Complex carbon sources 1 (long incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control - glucose 1.7928 1.0459 0.6039
Wheat bran 2.193 0.597 0.3447
Horse manure 2.8835 1.1758 0.6788
Oak leaves 4.4988 2.2766 1.3144
Hay 2.8579 0.3371 0.1946
Corn stalk 3.0678 0.5844 0.3374
Pectine 3.2559 0.6227 0.3595
Microcrystalline cellulose 4.3792 1.4032 0.8101
Xylose 1.5043 0.4633 0.2675
Cellobiose 0.6218 0.1987 0.1147
Lignin 2.8099 0.5926 0.3421
Apple peels 1.3544 0.366 0.2113
Coprinopsis challenged with bacteria Transcriptional response to Bacillus subtilis and Escherichia coli. Kombrink et al. 2018 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control 1.8242 0.481 0.2777
Bsubtilis 2.2043 0.4134 0.2387
Ecoli 2.2772 0.3103 0.1791
Early development 1 Time series expression profiling of basidiospore and oidium germination Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
BS 0h 5.1686 0.8023 0.4632
BS 4h 3.2489 0.8878 0.5125
BS 8h 1.6784 0.5001 0.2888
BS 12h 0.8072 0.1387 0.0801
Oidia 0 h 1.4256 0.7928 0.4577
Oidia 18 h 1.8492 0.4461 0.2576
Sclerotia 1.0485 0.4015 0.2318
Early development 2 Time series expression profiling of mycelial growth, light induction and fruiting body initiation. Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
DM 12h 1.7641 0.378 0.2183
DM 36h 2.2634 0.5432 0.3136
DM 60h 2.4366 0.6087 0.3514
DM 84h 2.242 0.1084 0.0626
DM 108h 2.1157 0.3709 0.2141
DM 132h 2.3167 0.3288 0.1899
DM 156hAE 2.0185 0.2415 0.1394
ELI1hAE 2.2453 0.5173 0.2986
ELI2hAE 1.9621 0.8095 0.4674
LI2hAE 1.9846 0.7003 0.4043
LI6hAE 1.8526 1.1792 0.6808
LI12hAE 1.9635 0.8371 0.4833
LI18hAE 1.8011 0.8146 0.4703
LI 24hAE 1.6538 0.4586 0.2648
DM 156hAM 1.9498 1.3414 0.7744
ELI1hAM 1.2904 0.2783 0.1607
ELI2hAM 2.5492 1.1249 0.6495
LI2hAM 2.981 0.4797 0.2769
LI6hAM 1.5834 0.7451 0.4302
LI12hAM 1.7453 0.0577 0.0333
LI18hAM 2.2078 1.6945 0.9783
LI 24hAM 0.3323 0.1983 0.1145
LI 24hHK 2.0521 1.2444 0.7185
L/D 6h 3.447 1.1844 0.6838
L/D 12h 4.538 0.9447 0.5454
L/D 18h 4.3487 1.668 0.963
L/D 24h 3.893 1.3189 0.7615
Fruiting body development RNA-Seq analysis of fruiting body development Krizsan et al. 2019 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Vegetative mycelium 1.035 0.1286 0.0742
Hyphal knots 8.0311 6.9264 3.999
Primordium 1 2.6731 0.7842 0.4528
Primordium 2 2.3596 0.7225 0.4171
Young Fruiting body cap 4.1896 0.8804 0.5083
Younf fruiting body gill 2.9644 1.1343 0.6549
Young fruiting body stipe 2.8884 0.6405 0.3698
Mature fruiting body cap_gill 2.0493 0.7063 0.4078
Mature fruiting body stipe 4.8151 0.4567 0.2637
Nitrogen sources (12h incubation) Expression profiling on diverse nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Complete medium - control 0.8826 0.2951 0.1704
NH4NO3 1.2979 0.2747 0.1586
Proline 1.3221 0.1601 0.0924
Tryptophan 1.2703 0.4794 0.2768
Isoleucin 0.9574 0.1654 0.0955
Arginine 1.7995 0.1385 0.08
Metionine 1.1484 0.3856 0.2226
NaNO3 2.0792 0.3846 0.2221
Plant biomass (12h incubation) Expression profiling on diverse plant biomasses as carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 0.8826 0.2951 0.1704
Citrus peel 0.725 0.4708 0.2718
Poplar leaves 1.1224 0.2324 0.1342
Typha leaves 1.2013 0.3942 0.2276
Overwintered Salix leaves 1.3214 0.4186 0.2417
Reed flowering 1.5701 1.1459 0.6616
Tigernut 1.3354 0.3864 0.2231
Energy cane 1.3059 0.3257 0.1881
Guar gum 1.6465 0.4716 0.2723
Apple peels 1.4871 0.6502 0.3754
Cellobiose 1.3762 0.5884 0.3397
Corn stalk 1.2747 0.3878 0.2239
Horse manure 1.4232 0.3805 0.2197
Lignin 0.9525 0.384 0.2217
Microcrystalline cellulose 1.2553 0.4475 0.2584
Oak leaves 1.2679 0.0771 0.0445
Pectin esterified 1.0667 0.3197 0.1846
Poplar sawdust 1.4065 0.0624 0.036
Wheat bran 1.3558 0.8341 0.4816
Chlamydomonas reinhardtii 1.9286 0.4976 0.2873
Vertatryl alcohol 2.4333 0.0661 0.0382
Furfural 2.1921 0.246 0.142
Autoclaved mycelium 2.0038 0.7065 0.4079
Simple and complex carbon and nitrogen sources Expression profiling on diverse complex carbon and nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 0.8504 0.1085 0.0627
Ribose 1.9198 0.195 0.1126
Mannose 1.5418 0.3997 0.2826
Fructose 1.6617 0.3877 0.2239
Arabinose 1.628 0.4814 0.2779
Xylose 1.7461 0.6629 0.3827
Galacturonic acid 2.3282 0.2541 0.1467
Rhamnogalacturonan 1.6346 0.8551 0.4937
Pectin esterified 1.233 0.4078 0.2354
Polygalacturonic acid 2.2586 0.3077 0.1777
Sodium acetate 2.1953 0.2934 0.1694
No nitrogen 1.0841 0.2162 0.1248
BSA 1.4665 0.3551 0.205
Glutamine 1.6069 0.0659 0.038
No phosphate 0.9946 0.621 0.3585
No carbon 2.0249 0.0628 0.0444
No sulphur 1.0745 0.1793 0.1035
Simple and complex carbon sources (12h incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 0.8826 0.2951 0.1704
Amylose 1.6379 0.5346 0.3086
Fucose 1.3482 0.4358 0.2516
Galactose 1.2025 0.1627 0.0939
Lactose 1.57 0.4304 0.2485
Maltose 1.3711 0.2552 0.1473
Mannitol 1.3747 0.0744 0.043
Rhamnose 2.0198 1.0027 0.5789
Sorbitol 1.369 0.2399 0.1385
Trehalose 2.9699 2.3154 1.3368
Glycerol 1.5405 0.3002 0.1733
Glucuronic acid 1.2184 0.5273 0.3044
Arabinan 1.3876 0.6747 0.3895
Galactan 0.9756 0.2389 0.138
Galactomannan 1.5179 0.5211 0.3008
Glucan 1.3468 0.1834 0.1059
Xylan 1.4564 0.6712 0.3875
Xyloglucan 1.321 0.3526 0.2036
Arabinogalactan 1.1995 0.502 0.2898
Pectin 1.0948 0.7367 0.4253
Rhamnogalacturonan 0.6658 0.2826 0.1632
Polygalacturonic acid 2.0427 0.1534 0.0886
Mannan 1.1413 0.2969 0.1714
Amylopectin 1.607 0.111 0.0641
Inulin 1.5517 0.2865 0.1654
BSA 1.5094 0.6347 0.3665
Starvation induced by water agar transfer Expression profiling on starvation induced by transfer to water agar Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Control 2.4366 0.6087 0.3514
2h WAT 2.3366 1.2689 0.7326
4h WAT 3.359 0.6822 0.3938
8h WAT 2.0863 0.465 0.2685
16h WAT 2.823 1.1455 0.6614
24h WAT 1.7902 0.5042 0.2911
WAT hyphal knot -30h 3.173 1.4145 0.8166
WAT hyphal knot -22h 3.5381 0.5002 0.2888
WAT hyphal knot -15h 2.4591 1.0334 0.5966
WAT hyphal knot -7.5h 3.2431 1.1693 0.6751
WAT hyphal knot 2.3406 0.8356 0.4825
WAT hyphal knot +7.5h 1.4528 0.7625 0.4402
Straw time series Time series expression profiling on straw as a carbon source Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 1.5423 1.0757 0.6211
Straw 3h 1.3584 0.5858 0.3382
Straw 6h 0.9858 0.8514 0.4915
Straw 12h 1.1195 0.1366 0.0789
Straw 24h 0.7581 0.141 0.0814
Stress conditions 1 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 2.0817 1.4763 0.8524
Frost (-20C, 30min) 1.9248 0.2301 0.1329
Heat shock (47C, 2h) 6.4776 1.1161 0.6444
High CO2 0.9488 0.063 0.0363
Drought (4% agar, 12h) 2.8857 1.522 0.8787
Oxidative (1mM H2O2, 3h) 2.1958 0.3625 0.2093
Acidic (pH4, 3h) 2.6657 2.3429 1.3527
Alkaline (pH9, 3h) 1.6833 0.3147 0.1817
Osmotic (sorbitol 2h) 2.1914 0.4726 0.2729
CongoRed (3h) 2.8413 0.5573 0.3217
Cobalt chloride control 1.3781 0.1627 0.0939
Cobalt chloride 2mM 1.1206 0.4203 0.2427
Stress conditions 2 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 1.4326 0.3096 0.1787
Cold stimulation 2.9904 1.4552 0.8402
Scratched surface 3.0616 0.5658 0.3267
Ca2+, 200mM, 24h 1.3462 0.3802 0.2195
Cu2+, 2mM, 6h 1.5719 1.4381 0.8303
Voriconazole 1.2537 0.5836 0.3369
Trichoderma interaction, early 3.2613 1.4587 0.8422
Trichoderma interaction 60h 4.9444 5.3376 3.0817
Cobalt chloride 2mM repeat 2.5958 0.6125 0.3536
Hypoxia 1.7359 0.6721 0.3881
Hypoxia control 0.93 0.9023 0.521
Protoplastation control 1.7439 1.5295 1.0815
Protoplastation 3.5h 4.8465 6.854 4.8465
Protoplastation 1.5h 6.1095 3.8277 2.7066

General data

Systematic name -
Protein id CopciAB_244680.T0
Description

Annotation summary

0 100 200 300 328

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
Pfam PF01633 Choline/ethanolamine kinase - 227 282

SignalP

Prediction Start End Score
No records

Transmembrane domains

Domain n Start End Length
No records

InterPro

Accession Description
IPR011009 Protein kinase-like domain superfamily

GO

Go id Term Ontology
No records

KEGG

KEGG Orthology
No records

EggNOG

COG category Description
No records

CAZy

Class Family Subfamily
No records

Transcription factor

Group
No records

Conservation of CopciAB_244680 across fungi.

Arrow shows the origin of gene family containing CopciAB_244680.

Protein

Sequence id CopciAB_244680.T0
Sequence >CopciAB_244680.T0
MEDSLPTQELGTDEVDMQCNPPLPSIHPVVPLRVTILRTIMKVLPRRIKRLIYRSLCALSNRWGWRVHPVLHCLP
FGLALRRKTSFSTIQHSSAVEAAGLKYLESSNIQGVNFPHLVDITVDGDTAYTLTTYIDGDTLASVLDHFTSQDW
ERLVLDLRSQLRSLRQQTTCESQRPIICNAAGSTIIDDPRISWVAESGRELATTQGFFSQVWLGLDLARNVDTIR
PKIQPLIDRPGVSVNFCHGDVYPRNIILPGGLSAWRRGKSRVCFVDWEYSGWMPAPWEALKATLMECEEDSEWLV
TIRKVLPEFNEYLDADWEWRSKSNMMIV
Length 328

Coding

Sequence id CopciAB_244680.T0
Sequence >CopciAB_244680.T0
ATGGAAGACTCACTCCCAACGCAGGAACTTGGTACCGACGAAGTCGACATGCAATGCAATCCCCCACTCCCCTCC
ATACATCCCGTTGTGCCCCTACGCGTCACAATACTCAGGACAATTATGAAAGTTCTACCTCGTCGCATAAAGCGC
CTGATATACCGTTCCTTATGCGCTTTGAGTAACCGCTGGGGTTGGCGTGTCCACCCGGTTCTCCACTGCCTTCCC
TTTGGCCTCGCCCTCAGGCGCAAGACTTCGTTTAGTACCATCCAACATTCATCAGCAGTCGAAGCTGCCGGCCTA
AAATACCTGGAATCTTCCAATATACAAGGCGTCAATTTTCCGCACCTCGTCGACATAACTGTGGACGGCGACACG
GCATACACACTGACGACGTACATCGATGGGGACACACTTGCATCAGTGCTGGACCATTTCACCAGTCAGGACTGG
GAACGTCTTGTCTTGGACCTGCGATCCCAGCTTAGGTCTCTTCGCCAACAGACCACTTGCGAGTCACAGCGCCCC
ATAATCTGCAACGCCGCGGGTAGTACGATAATCGACGACCCCCGTATCTCCTGGGTCGCGGAAAGCGGAAGAGAG
CTTGCAACAACGCAGGGATTCTTCTCCCAAGTCTGGCTTGGTTTGGATCTTGCACGGAACGTCGATACCATCCGA
CCGAAAATCCAGCCGTTGATCGACCGTCCCGGTGTATCGGTCAACTTTTGTCATGGAGATGTGTATCCTAGGAAT
ATTATCCTCCCTGGAGGACTGTCAGCTTGGAGACGGGGGAAGAGCCGGGTTTGTTTTGTAGATTGGGAGTATTCG
GGGTGGATGCCGGCCCCGTGGGAGGCCCTTAAAGCTACGTTGATGGAATGCGAGGAGGATAGCGAGTGGTTAGTG
ACTATCCGGAAGGTCCTCCCTGAGTTTAACGAATATCTCGATGCGGATTGGGAATGGCGGTCGAAATCTAATATG
ATGATCGTTTAG
Length 987

Transcript

Sequence id CopciAB_244680.T0
Sequence >CopciAB_244680.T0
AAGTCCAACGAGTCACAAGTGACAACCCCTTTCGTGACCACTGGAGCAAAATGGAAGACTCACTCCCAACGCAGG
AACTTGGTACCGACGAAGTCGACATGCAATGCAATCCCCCACTCCCCTCCATACATCCCGTTGTGCCCCTACGCG
TCACAATACTCAGGACAATTATGAAAGTTCTACCTCGTCGCATAAAGCGCCTGATATACCGTTCCTTATGCGCTT
TGAGTAACCGCTGGGGTTGGCGTGTCCACCCGGTTCTCCACTGCCTTCCCTTTGGCCTCGCCCTCAGGCGCAAGA
CTTCGTTTAGTACCATCCAACATTCATCAGCAGTCGAAGCTGCCGGCCTAAAATACCTGGAATCTTCCAATATAC
AAGGCGTCAATTTTCCGCACCTCGTCGACATAACTGTGGACGGCGACACGGCATACACACTGACGACGTACATCG
ATGGGGACACACTTGCATCAGTGCTGGACCATTTCACCAGTCAGGACTGGGAACGTCTTGTCTTGGACCTGCGAT
CCCAGCTTAGGTCTCTTCGCCAACAGACCACTTGCGAGTCACAGCGCCCCATAATCTGCAACGCCGCGGGTAGTA
CGATAATCGACGACCCCCGTATCTCCTGGGTCGCGGAAAGCGGAAGAGAGCTTGCAACAACGCAGGGATTCTTCT
CCCAAGTCTGGCTTGGTTTGGATCTTGCACGGAACGTCGATACCATCCGACCGAAAATCCAGCCGTTGATCGACC
GTCCCGGTGTATCGGTCAACTTTTGTCATGGAGATGTGTATCCTAGGAATATTATCCTCCCTGGAGGACTGTCAG
CTTGGAGACGGGGGAAGAGCCGGGTTTGTTTTGTAGATTGGGAGTATTCGGGGTGGATGCCGGCCCCGTGGGAGG
CCCTTAAAGCTACGTTGATGGAATGCGAGGAGGATAGCGAGTGGTTAGTGACTATCCGGAAGGTCCTCCCTGAGT
TTAACGAATATCTCGATGCGGATTGGGAATGGCGGTCGAAATCTAATATGATGATCGTTTAGCCGTGTACACTAG
TAGTGCGCTCGGTTGAATGCGGATTGTCGAGTCTGTCTCGTACGCGTACGCACCCCCTACAAGGACCCTTTGTGA
CCTATC
Length 1131

Gene

Sequence id CopciAB_244680.T0
Sequence >CopciAB_244680.T0
AAGTCCAACGAGTCACAAGTGACAACCCCTTTCGTGACCACTGGAGCAAAATGGAAGACTCACTCCCAACGCAGG
AACTTGGTACCGACGAAGTCGACAGTGGGTACAATCCCGATTTCCTTGTTCGTAAATACCGGGTTATAACTTGTC
GACTGTAGTGCAATGCAATCCCCCACTCCCCTCCATACATCCCGTTGTGCCCCTACGCGTCACAATACTCAGGAC
AATTATGAAAGTTCTACCTCGTCGCATAAAGCGCCTGATATACCGTTCCTTATGCGCTTTGAGTAACCGCTGGGG
TTGGCGTGTCCACCCGGTTCTCCACTGCCTTCCCTTTGGCCTCGCCCTCAGGCGCAAGACTTCGTTTAGTACCAT
CCAACATTCATCAGCAGTCGAAGCTGCCGGCCTAAAATACCTGGAATCTTCCAATATACAAGGCGTCAATTTTCC
GCACCTCGTCGACATAACTGTGGACGGCGACACGGCATACACACTGACGACGTACATCGATGGGGACACACTTGC
ATCAGTGCTGGACCATTTCACCAGTCAGGACTGGGAACGTCTTGTCTTGGACCTGCGATCCCAGCTTAGGTCTCT
TCGCCAACAGACCACTTGCGAGTCACAGCGCCCCATAATCTGCAACGCCGCGGGTAGTACGATAATCGACGACCC
CCGTATCTCCTGGGTCGCGGAAAGCGGAAGAGAGCTTGCAACAACGCAGGGATTCTTCTCCCAAGTCTGGCTTGG
TTTGGATCTTGCACGGAACGTCGATACCATCCGACCGAAAATCCAGCCGTTGATCGACCGTCCCGGTGTATCGGT
CAACTTTTGTCATGGAGATGTGTATCCTAGGAATATTATCCTCCCTGGAGGACTGTCAGCTTGGAGACGGGGGAA
GAGCCGGGTTTGTTTTGTAGATTGGGAGTATTCGGGGTGGATGCCGGCCCCGTGGGAGGCCCTTAAAGCTACGTT
GATGGAATGCGAGGAGGATAGCGAGTGGTTAGTGACTATCCGGAAGGTCCTCCCTGAGTTTAACGAATATCTCGA
TGCGGATTGGGAATGGCGGTCGAAATCTAATATGATGATCGTTTAGCCGTGTACACTAGTAGTGCGCTCGGTTGA
ATGCGGATTGTCGAGTCTGTCTCGTACGCGTACGCACCCCCTACAAGGACCCTTTGTGACCTATC
Length 1190