Systematic name | CopciAB_354501 | Strain | Coprinopsis cinerea Okayama 7 |
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Standard name | - | Synonyms | 354501 |
Uniprot id | Functional description | ||
Location | scaffold_11:1650657..1652361 | Strand | - |
Gene length (nt) | 1705 | Transcript length (nt) | 1568 |
CDS length (nt) | 1335 | Protein length (aa) | 444 |
Strain name | Gene / Protein name |
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Strain name | Gene / Protein name | Pident | E-value | Bits |
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0 |
Name | Summary | Attribution | Assay type | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Carbon metabolism | Transcriptional changes along alternative morphogenetic paths of C. cinerea | Xie et al. 2020 | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Complex carbon sources 1 (long incubation) | Expression profiling on diverse complex carbon sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Coprinopsis challenged with bacteria | Transcriptional response to Bacillus subtilis and Escherichia coli. | Kombrink et al. 2018 | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Early development 1 | Time series expression profiling of basidiospore and oidium germination | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Early development 2 | Time series expression profiling of mycelial growth, light induction and fruiting body initiation. | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Fruiting body development | RNA-Seq analysis of fruiting body development | Krizsan et al. 2019 | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Nitrogen sources (12h incubation) | Expression profiling on diverse nitrogen sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Plant biomass (12h incubation) | Expression profiling on diverse plant biomasses as carbon sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Simple and complex carbon and nitrogen sources | Expression profiling on diverse complex carbon and nitrogen sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Simple and complex carbon sources (12h incubation) | Expression profiling on diverse complex carbon sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Starvation induced by water agar transfer | Expression profiling on starvation induced by transfer to water agar | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Straw time series | Time series expression profiling on straw as a carbon source | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Stress conditions 1 | Expression profiling under various stress conditions | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Stress conditions 2 | Expression profiling under various stress conditions | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Systematic name | - |
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Protein id | CopciAB_354501.T0 |
Description |
Analysis | Signature accession | Signature description | InterPro Accession | Start | End |
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No records |
Prediction | Start | End | Score |
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No records |
Domain n | Start | End | Length |
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No records |
Accession | Description |
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IPR032675 | Leucine-rich repeat domain superfamily |
Go id | Term | Ontology |
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No records |
KEGG Orthology |
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No records |
COG category | Description |
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No records |
Class | Family | Subfamily |
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No records |
Group |
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No records |
Arrow shows the origin of gene family containing CopciAB_354501.
Sequence id | CopciAB_354501.T0 |
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Sequence |
>CopciAB_354501.T0 MASDPFPNELLDAVIDDLDPKTDAQTLSSLALVNQHATTIVNERRFKNVALIRSLGGRRCEGLWELVKANPNLVH NILSLQLADNSIDGGGFFFGVSDESSDEDDGDEWTSTGRVGWLGERRPVAPGLVELLTAVKPTLQVLAVCSRLQW RSLSRPVRRALLELASSPALKVLKLGRFIQIPISLFLTSPHLKQLSSKRTYISPSNSRTSNEPSQVLADELGQLD VLELRDSFSELQFLPLSLSKLRRLVVEFSPEENMFTQRMPHDVKDALWNLLEDLPLKEFRLLFVLPSHFSAQLSA LTQFILFTKWPLRVLEVAVIYRDNLDAWMGPLSLVLAKMKTLEELRLEVYPISEARSDAYDRRGATDIECRPAWE SLEKALVQLSTLRKLVIVFDERHRETEMYRDPEDTLKAAMPTLLGDGRSLRFAVEWNERPEVYYDPECE |
Length | 444 |
Sequence id | CopciAB_354501.T0 |
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Sequence |
>CopciAB_354501.T0 ATGGCCTCTGACCCCTTTCCCAACGAGCTCCTCGACGCTGTCATCGACGATCTCGACCCAAAGACAGATGCACAA ACCCTCTCCTCTCTCGCACTGGTTAACCAACACGCCACGACTATTGTCAACGAGCGCCGGTTCAAGAACGTAGCG TTAATTCGAAGCCTTGGAGGGCGTCGATGCGAAGGACTCTGGGAACTCGTCAAGGCCAACCCGAACCTCGTGCAC AACATCCTTTCGCTCCAGTTGGCCGACAATTCCATTGATGGAGGCGGTTTTTTCTTTGGAGTGTCTGATGAGTCC AGTGATGAAGACGATGGGGACGAGTGGACCTCGACTGGTAGGGTTGGATGGCTGGGAGAGAGGAGGCCTGTCGCA CCGGGTCTTGTCGAACTCTTGACGGCTGTCAAGCCCACCCTGCAGGTACTCGCAGTCTGCTCAAGACTTCAGTGG CGTAGTCTCTCGAGGCCTGTTCGACGTGCGCTCCTCGAACTCGCATCGTCGCCTGCACTCAAAGTCCTCAAACTA GGTCGCTTCATCCAAATACCTATCTCCCTCTTCCTCACCTCGCCTCACCTCAAGCAACTCTCGTCGAAAAGAACC TATATCTCCCCCTCGAATTCGCGTACCTCTAATGAGCCATCACAGGTCCTCGCCGACGAGCTAGGGCAACTCGAC GTTCTGGAGCTCAGGGACTCGTTTTCAGAGCTCCAGTTCCTCCCGTTATCTCTGTCAAAGTTGCGAAGGCTCGTC GTCGAGTTTAGCCCCGAGGAGAACATGTTCACTCAACGTATGCCCCACGACGTGAAGGACGCTTTGTGGAATTTG CTGGAAGACCTTCCGCTGAAAGAATTCCGCCTGCTTTTTGTTCTCCCGTCCCATTTCTCAGCACAGCTCTCTGCG CTCACGCAATTTATTCTCTTCACGAAATGGCCCCTTCGTGTGCTGGAGGTTGCAGTTATCTACAGAGACAATCTC GACGCTTGGATGGGGCCTTTGTCCTTGGTGCTTGCGAAAATGAAGACCCTCGAGGAGCTGCGACTCGAGGTCTAT CCGATCTCCGAAGCTCGGTCAGATGCATATGATCGAAGGGGTGCGACCGACATCGAGTGTCGCCCTGCTTGGGAG AGCCTCGAGAAAGCACTCGTCCAGCTCAGCACCCTTCGGAAGCTCGTCATCGTGTTTGACGAGAGGCATAGGGAG ACGGAGATGTATCGCGATCCTGAGGATACGTTGAAAGCGGCGATGCCAACTTTGCTTGGGGATGGTCGTTCTCTT AGGTTTGCTGTCGAATGGAACGAACGCCCCGAAGTTTATTATGACCCTGAATGTGAATAG |
Length | 1335 |
Sequence id | CopciAB_354501.T0 |
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Sequence |
>CopciAB_354501.T0 ATCCCCAAACTGCTCGTCCAAATGGCCTCTGACCCCTTTCCCAACGAGCTCCTCGACGCTGTCATCGACGATCTC GACCCAAAGACAGATGCACAAACCCTCTCCTCTCTCGCACTGGTTAACCAACACGCCACGACTATTGTCAACGAG CGCCGGTTCAAGAACGTAGCGTTAATTCGAAGCCTTGGAGGGCGTCGATGCGAAGGACTCTGGGAACTCGTCAAG GCCAACCCGAACCTCGTGCACAACATCCTTTCGCTCCAGTTGGCCGACAATTCCATTGATGGAGGCGGTTTTTTC TTTGGAGTGTCTGATGAGTCCAGTGATGAAGACGATGGGGACGAGTGGACCTCGACTGGTAGGGTTGGATGGCTG GGAGAGAGGAGGCCTGTCGCACCGGGTCTTGTCGAACTCTTGACGGCTGTCAAGCCCACCCTGCAGGTACTCGCA GTCTGCTCAAGACTTCAGTGGCGTAGTCTCTCGAGGCCTGTTCGACGTGCGCTCCTCGAACTCGCATCGTCGCCT GCACTCAAAGTCCTCAAACTAGGTCGCTTCATCCAAATACCTATCTCCCTCTTCCTCACCTCGCCTCACCTCAAG CAACTCTCGTCGAAAAGAACCTATATCTCCCCCTCGAATTCGCGTACCTCTAATGAGCCATCACAGGTCCTCGCC GACGAGCTAGGGCAACTCGACGTTCTGGAGCTCAGGGACTCGTTTTCAGAGCTCCAGTTCCTCCCGTTATCTCTG TCAAAGTTGCGAAGGCTCGTCGTCGAGTTTAGCCCCGAGGAGAACATGTTCACTCAACGTATGCCCCACGACGTG AAGGACGCTTTGTGGAATTTGCTGGAAGACCTTCCGCTGAAAGAATTCCGCCTGCTTTTTGTTCTCCCGTCCCAT TTCTCAGCACAGCTCTCTGCGCTCACGCAATTTATTCTCTTCACGAAATGGCCCCTTCGTGTGCTGGAGGTTGCA GTTATCTACAGAGACAATCTCGACGCTTGGATGGGGCCTTTGTCCTTGGTGCTTGCGAAAATGAAGACCCTCGAG GAGCTGCGACTCGAGGTCTATCCGATCTCCGAAGCTCGGTCAGATGCATATGATCGAAGGGGTGCGACCGACATC GAGTGTCGCCCTGCTTGGGAGAGCCTCGAGAAAGCACTCGTCCAGCTCAGCACCCTTCGGAAGCTCGTCATCGTG TTTGACGAGAGGCATAGGGAGACGGAGATGTATCGCGATCCTGAGGATACGTTGAAAGCGGCGATGCCAACTTTG CTTGGGGATGGTCGTTCTCTTAGGTTTGCTGTCGAATGGAACGAACGCCCCGAAGTTTATTATGACCCTGAATGT GAATAGTATCCTCGAGCGGAGATGTAATCGCCTTTTTACCCTGCGGTAGGCTACACATAATTTTTAAATTCTCGA CCATCGCTGTCTGCATGTCGCTCTAGCCGTTGTAGTAACGAGACTCTCAGCCGTATCAGCCTTGTGTCGGAGCTC ACATTCCGCGTTTTTGCTATGTTTTACGAGCGCGTCGAGTTCGAATAAATGATAGACATTGTTCTCTC |
Length | 1568 |
Sequence id | CopciAB_354501.T0 |
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Sequence |
>CopciAB_354501.T0 ATCCCCAAACTGCTCGTCCAAATGGCCTCTGACCCCTTTCCCAACGAGCTCCTCGACGCTGTCATCGACGATCTC GACCCAAAGACAGATGCACAAACCCTCTCCTCTCTCGCACTGGTTAACCAACACGCCACGACTATTGTCAACGAG CGCCGGTTCAAGAACGTAGCGTTAATTCGAAGCCTTGGAGGGCGTCGATGCGAAGGACTCTGGGAACTCGTCAAG GCCAACCCGAACCTCGTGCACAACATCCTTTCGCTCCAGTTGGCCGACAATTCCATTGATGGAGGCGGTTTTTTC TTTGGAGTGTCTGATGAGTCCAGTGATGAAGACGATGGGGACGAGTGGACCTCGACTGGTAGGGTTGGATGGCTG GGAGAGAGGAGGCCTGTCGCACCGGGTCTTGTCGAACTCTTGACGGCTGTCAAGCCCACCCTGCAGGTACTCGCA GTCTGCTCAAGACTTCAGTGGCGTAGTCTCTCGAGGCCTGTTCGACGTGCGCTCCTCGAACTCGCATCGTCGCCT GCACTCAAAGTCCTCAAACTAGGTCGCTTCATCCAAATACCTATCTCCCTCTTCCTCACCTCGCCTCACCTCAAG CAACTCTCGTCGAAAAGAACCTATATCTCCCCCTCGAATTCGCGTACCTCTAATGAGCCATCACAGGTCCTCGCC GACGAGCTAGGGCAACTCGACGTTCTGGAGCTCAGGGACTCGTTTTCAGAGCTCCAGTTCCTCCCGTTATCTCTG TCAAAGTTGCGAAGGCTCGTCGTCGAGTTTAGCCCCGAGGAGAACATGTTCACTCAACGTATGCCCCACGACGTG AAGGACGCTTTGTGGAATTTGCTGGAAGACCTTCCGCTGAAAGAATTCCGCCTGCTTTTTGTTCTCCCGTCCCAT TTCTCAGCACAGCTCTCTGCGCTCACGCGTGAGTTTTCTCTTTCCTGATAGTTTCCCTTTTTTTGTGGAGAGCAC CGGACACTGACTTGTACGCCACCTATCTACGCAGAATTTATTCTCTTCACGAAATGGCCCCTTCGTGTGCTGGAG GTTGCAGTTATCTACAGAGACAATCTCGACGCTTGGATGGGGCCTTTGTCCTTGGTGCTTGCGAAAATGAAGACC CTCGAGGAGCTGCGACTCGAGGTCTATCCGATCTCCGAAGCTCGGTCAGATGCATATGATCGAAGGGGTGCGACC GACATCGAGTGTCGCCCTGCTTGGGAGAGCCTCGAGAAAGCACTCGTCCAGCTCAGCACCCTTCGGAAGCTCGTC ATCGTGTTTGACGAGAGGCATAGGGAGACGGAGATGTATCGCGATCCTGAGGATACGTTGAAAGCGGCGATGCCA ACTTTGCTTGGGGATGGTCGTTCTCTTAGGTTTGCTGTCGAATGGTAAGTTTTTTGAAGTCTCTTTCTGGAATGG TGGTGTTTATTCCTCTCCTTCGCAGGAACGAACGCCCCGAAGTTTATTATGACCCTGAATGTGAATAGTATCCTC GAGCGGAGATGTAATCGCCTTTTTACCCTGCGGTAGGCTACACATAATTTTTAAATTCTCGACCATCGCTGTCTG CATGTCGCTCTAGCCGTTGTAGTAACGAGACTCTCAGCCGTATCAGCCTTGTGTCGGAGCTCACATTCCGCGTTT TTGCTATGTTTTACGAGCGCGTCGAGTTCGAATAAATGATAGACATTGTTCTCTC |
Length | 1705 |