Systematic name | CopciAB_359285 | Strain | Coprinopsis cinerea Okayama 7 |
---|---|---|---|
Standard name | - | Synonyms | 359285 |
Uniprot id | Functional description | Belongs to the glycosyl hydrolase 5 (cellulase A) family | |
Location | scaffold_4:1317425..1319957 | Strand | + |
Gene length (nt) | 2533 | Transcript length (nt) | 1984 |
CDS length (nt) | 1332 | Protein length (aa) | 443 |
Strain name | Gene / Protein name |
---|---|
Neurospora crassa | NCU08412 |
Aspergillus niger | manA |
Aspergillus nidulans | AN9276_manF |
Strain name | Gene / Protein name | Pident | E-value | Bits |
---|---|---|---|---|
Agrocybe aegerita | Agrae_CAA7263174 | 66.5 | 7.589E-208 | 644 |
Hypsizygus marmoreus strain 51987-8 | Hypma_RDB16956 | 67.4 | 4.208E-207 | 642 |
Pleurotus ostreatus PC9 | PleosPC9_1_52090 | 64.4 | 1.133E-200 | 623 |
Pleurotus ostreatus PC15 | PleosPC15_2_1041600 | 62.6 | 3.658E-196 | 610 |
Agaricus bisporus var. burnettii JB137-S8 | Agabi_varbur_1_112644 | 62.9 | 7.304E-196 | 609 |
Agaricus bisporus var bisporus (H97) | Agabi_varbisH97_2_192609 | 62.9 | 1.555E-195 | 608 |
Pleurotus eryngii ATCC 90797 | Pleery1_1491814 | 62.6 | 4.699E-195 | 607 |
Grifola frondosa | Grifr_OBZ68183 | 60.8 | 8.634E-187 | 583 |
Ganoderma sp. 10597 SS1 v1.0 | Gansp1_116075 | 61.1 | 4.253E-186 | 581 |
Flammulina velutipes | Flave_chr07AA00834 | 61.2 | 7.22E-180 | 563 |
Lentinula edodes B17 | Lened_B_1_1_6094 | 59.9 | 3.044E-179 | 561 |
Lentinula edodes NBRC 111202 | Lenedo1_1177261 | 60.1 | 3.847E-179 | 561 |
Lentinula edodes W1-26 v1.0 | Lentinedodes1_22615 | 60.1 | 3.818E-179 | 561 |
Schizophyllum commune H4-8 | Schco3_2635181 | 68.9 | 3.038E-174 | 547 |
Auricularia subglabra | Aurde3_1_1148144 | 55.1 | 9.405E-165 | 520 |
Name | Summary | Attribution | Assay type | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Carbon metabolism | Transcriptional changes along alternative morphogenetic paths of C. cinerea | Xie et al. 2020 | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Complex carbon sources 1 (long incubation) | Expression profiling on diverse complex carbon sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Coprinopsis challenged with bacteria | Transcriptional response to Bacillus subtilis and Escherichia coli. | Kombrink et al. 2018 | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Early development 1 | Time series expression profiling of basidiospore and oidium germination | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Early development 2 | Time series expression profiling of mycelial growth, light induction and fruiting body initiation. | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Fruiting body development | RNA-Seq analysis of fruiting body development | Krizsan et al. 2019 | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Nitrogen sources (12h incubation) | Expression profiling on diverse nitrogen sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Plant biomass (12h incubation) | Expression profiling on diverse plant biomasses as carbon sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Simple and complex carbon and nitrogen sources | Expression profiling on diverse complex carbon and nitrogen sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Simple and complex carbon sources (12h incubation) | Expression profiling on diverse complex carbon sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Starvation induced by water agar transfer | Expression profiling on starvation induced by transfer to water agar | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Straw time series | Time series expression profiling on straw as a carbon source | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Stress conditions 1 | Expression profiling under various stress conditions | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Stress conditions 2 | Expression profiling under various stress conditions | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
Systematic name | - |
---|---|
Protein id | CopciAB_359285.T0 |
Description | Belongs to the glycosyl hydrolase 5 (cellulase A) family |
Analysis | Signature accession | Signature description | InterPro Accession | Start | End |
---|---|---|---|---|---|
Pfam | PF00734 | Fungal cellulose binding domain | IPR000254 | 25 | 52 |
Pfam | PF00150 | Cellulase (glycosyl hydrolase family 5) | IPR001547 | 114 | 407 |
Prediction | Start | End | Score |
---|---|---|---|
SP(Sec/SPI) | 1 | 21 | 0.9996 |
Domain n | Start | End | Length |
---|---|---|---|
No records |
Accession | Description |
---|---|
IPR000254 | Cellulose-binding domain, fungal |
IPR045053 | Mannan endo-1,4-beta-mannosidase-like |
IPR018087 | Glycoside hydrolase, family 5, conserved site |
IPR035971 | Cellulose-binding domain superfamily |
IPR001547 | Glycoside hydrolase, family 5 |
IPR017853 | Glycoside hydrolase superfamily |
Go id | Term | Ontology |
---|---|---|
GO:0005576 | extracellular region | CC |
GO:0005975 | carbohydrate metabolic process | BP |
GO:0030248 | cellulose binding | MF |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | MF |
GO:0071704 | organic substance metabolic process | BP |
KEGG Orthology |
---|
K19355 |
COG category | Description |
---|---|
G | Belongs to the glycosyl hydrolase 5 (cellulase A) family |
Class | Family | Subfamily |
---|---|---|
CBM | CBM1 | |
GH | GH5 | GH5_7 |
Group |
---|
No records |
Arrow shows the origin of gene family containing CopciAB_359285.
Sequence id | CopciAB_359285.T0 |
---|---|
Sequence |
>CopciAB_359285.T0 MKLSAGLVSLAIAVTSASAQAVGPWGQCGGSGWSGATTCESGYTCQKHNEWYSQCVPGTSSAPPPPVTPQPSTTA APPVVTPPPPTSATGFVKTNGTRFVLDGKPYTVVGSNSYWVGLSGHSRDNMNRAFADIAAAGGTTVRTWGFNEVT AYGGIPYYQIWNGRTPSVNTGANGLQNFDQVIAAAKANGIKLIVALTNNWSDYGGMDVYVRQILNSNNHDLFYTD PDVKAAFKNYIRAFVGRYVNETGILGWELANEPRCRGSTGTTSGRCTPATITAWAREMSAFIKSIDPNHLVALGD EGFYNQPGHPVYPYQGGEGIDFDVNLQIDTLDFGTVHAYPEHWGQQGNEVGFGNDWIKDHAESQKRYGKPVILEE YGVTTNKPAVYTEWLRTIQTSGLAGDLYWQAGSRLPTGSTHDDGFTVYPDQPAYQLLRSHAAAMKARG |
Length | 443 |
Sequence id | CopciAB_359285.T0 |
---|---|
Sequence |
>CopciAB_359285.T0 ATGAAGCTCTCTGCTGGACTCGTTTCTTTGGCTATTGCCGTCACCTCTGCCTCTGCTCAAGCTGTAGGCCCTTGG GGCCAGTGTGGTGGTAGTGGATGGAGTGGTGCAACGACTTGCGAGAGCGGCTATACTTGCCAGAAGCACAACGAA TGGTACTCTCAATGCGTCCCTGGTACCTCCAGCGCGCCTCCCCCTCCCGTCACTCCCCAGCCGTCGACCACTGCC GCTCCTCCCGTCGTGACCCCGCCACCTCCCACCTCTGCGACTGGCTTCGTCAAGACCAACGGTACCCGCTTCGTT TTGGACGGAAAGCCGTACACTGTGGTTGGATCCAACTCGTACTGGGTCGGTCTTTCTGGACACAGCAGGGACAAT ATGAACCGGGCCTTTGCTGACATTGCAGCTGCTGGAGGCACCACTGTCCGAACCTGGGGTTTCAACGAAGTCACT GCGTATGGCGGTATCCCCTATTATCAGATTTGGAACGGAAGGACGCCGTCCGTCAACACTGGCGCCAATGGTCTT CAAAACTTCGACCAGGTCATCGCCGCGGCCAAGGCCAACGGCATCAAGCTCATCGTTGCCCTGACGAACAACTGG TCCGATTATGGCGGCATGGACGTATATGTGAGACAAATTCTCAACTCCAACAACCACGATTTGTTCTACACGGAC CCGGACGTCAAGGCGGCCTTCAAGAACTATATTAGGGCTTTCGTCGGGAGATACGTCAATGAAACAGGTATCCTT GGATGGGAGCTTGCGAACGAACCAAGGTGTCGTGGAAGCACCGGCACCACCTCTGGCAGGTGCACACCGGCCACG ATTACGGCTTGGGCACGGGAAATGTCTGCCTTCATCAAGTCTATTGACCCCAACCACCTGGTGGCCCTTGGAGAC GAAGGCTTCTACAACCAACCCGGTCACCCGGTCTACCCATACCAGGGCGGGGAAGGTATTGACTTCGACGTCAAC CTTCAAATCGATACCCTCGACTTTGGTACTGTCCATGCCTATCCTGAGCACTGGGGTCAGCAAGGCAACGAAGTG GGCTTCGGAAACGATTGGATCAAGGACCACGCCGAATCCCAGAAGAGATACGGCAAGCCCGTCATCCTTGAGGAA TACGGCGTAACCACCAACAAGCCAGCCGTTTACACTGAATGGCTCAGGACCATCCAAACCTCCGGCCTTGCTGGG GACCTCTACTGGCAAGCGGGATCTCGACTCCCAACTGGTAGCACTCATGACGACGGATTCACTGTCTACCCTGAC CAGCCAGCCTACCAGCTCTTGCGAAGCCACGCTGCCGCCATGAAGGCTCGCGGGTAG |
Length | 1332 |
Sequence id | CopciAB_359285.T0 |
---|---|
Sequence |
>CopciAB_359285.T0 ACCTTTGACTCTCACCTTCAATTTTTCAGTTTCGAAACCAGACAATCTTCCAGGTTTCTAGGACTACTGCGGCCA CCACCTGAAAAACTGGGCCTTGCGATTGCATCCATATATCTTCTCGTTTTCGATGGAACACAACTTGACGAAGAT TTTCCGGCGCGTTTTCACAACGAAGCAAAATGATTACACGGGGCTCAGTCTAGGTTTCACGACATTCTCAGACTT GTGCCCTTGTGACGCCAAAACGGATAGCGACTGGTGCTTCTCATTGCGCCCGTTCCAAAAGCCTTTTAGTGGGAG CGGTCCGCACCGCGCTTGGCGCTAATCCCTGTTAAAGATGATCCACCAACACCCTTCTTTGGCCTTCTACGCACC TTCTATAGCATCCATCCGGTTGATCTTCGCGAAATCCCTGTGGGCAACACGCAGGACAATGCATACCGCAGGAAC TCTGGGCAAATGTGACTTTCGTCGAACGATATAAAGCGGACCGACCGCCATAGGAAGCCGTTAAGGAATTCAGCC ATCATGAAGCTCTCTGCTGGACTCGTTTCTTTGGCTATTGCCGTCACCTCTGCCTCTGCTCAAGCTGTAGGCCCT TGGGGCCAGTGTGGTGGTAGTGGATGGAGTGGTGCAACGACTTGCGAGAGCGGCTATACTTGCCAGAAGCACAAC GAATGGTACTCTCAATGCGTCCCTGGTACCTCCAGCGCGCCTCCCCCTCCCGTCACTCCCCAGCCGTCGACCACT GCCGCTCCTCCCGTCGTGACCCCGCCACCTCCCACCTCTGCGACTGGCTTCGTCAAGACCAACGGTACCCGCTTC GTTTTGGACGGAAAGCCGTACACTGTGGTTGGATCCAACTCGTACTGGGTCGGTCTTTCTGGACACAGCAGGGAC AATATGAACCGGGCCTTTGCTGACATTGCAGCTGCTGGAGGCACCACTGTCCGAACCTGGGGTTTCAACGAAGTC ACTGCGTATGGCGGTATCCCCTATTATCAGATTTGGAACGGAAGGACGCCGTCCGTCAACACTGGCGCCAATGGT CTTCAAAACTTCGACCAGGTCATCGCCGCGGCCAAGGCCAACGGCATCAAGCTCATCGTTGCCCTGACGAACAAC TGGTCCGATTATGGCGGCATGGACGTATATGTGAGACAAATTCTCAACTCCAACAACCACGATTTGTTCTACACG GACCCGGACGTCAAGGCGGCCTTCAAGAACTATATTAGGGCTTTCGTCGGGAGATACGTCAATGAAACAGGTATC CTTGGATGGGAGCTTGCGAACGAACCAAGGTGTCGTGGAAGCACCGGCACCACCTCTGGCAGGTGCACACCGGCC ACGATTACGGCTTGGGCACGGGAAATGTCTGCCTTCATCAAGTCTATTGACCCCAACCACCTGGTGGCCCTTGGA GACGAAGGCTTCTACAACCAACCCGGTCACCCGGTCTACCCATACCAGGGCGGGGAAGGTATTGACTTCGACGTC AACCTTCAAATCGATACCCTCGACTTTGGTACTGTCCATGCCTATCCTGAGCACTGGGGTCAGCAAGGCAACGAA GTGGGCTTCGGAAACGATTGGATCAAGGACCACGCCGAATCCCAGAAGAGATACGGCAAGCCCGTCATCCTTGAG GAATACGGCGTAACCACCAACAAGCCAGCCGTTTACACTGAATGGCTCAGGACCATCCAAACCTCCGGCCTTGCT GGGGACCTCTACTGGCAAGCGGGATCTCGACTCCCAACTGGTAGCACTCATGACGACGGATTCACTGTCTACCCT GACCAGCCAGCCTACCAGCTCTTGCGAAGCCACGCTGCCGCCATGAAGGCTCGCGGGTAGATAGATATACGACTA TTATGGCGGTCAGTACAAGATAGATCTTTCAAACATAATGTACAAAAAGCCAAGGGCGAATCTCGCCGCTTTACA ATTCTATGGTGGTGTCCATTTTGATCCATCCTTG |
Length | 1984 |
Sequence id | CopciAB_359285.T0 |
---|---|
Sequence |
>CopciAB_359285.T0 ACCTTTGACTCTCACCTTCAATTTTTCAGTTTCGAAACCAGACAATCTTCCAGGTTTCTAGGACTACTGCGGCCA CCACCTGAAAAACTGGGCCTTGCGATTGCATCCATATATCTTCTCGTTTTCGATGGAACACAACTTGACGAAGAT TTTCCGGCGCGTTTTCACAACGAAGCAAAATGATTACACGGGGCTCAGTCTAGGTTTCACGACATTCTCAGACTT GTGCCCTTGTGACGCCAAAACGGATAGCGACTGGTGCTTCTCATTGCGCCCGTTCCAAAAGCCTTTTAGTGGGAG CGGTCCGCACCGCGCTTGGCGCTAATCCCTGTTAAAGATGATCCACCAACACCCTTCTTTGGCCTTCTACGCACC TTCTATAGCATCCATCCGGTTGATCTTCGCGAAATCCCTGTGGGCAACACGCAGGACAATGCATACCGCAGGAAC TCTGGGCAAATGTGACTTTCGTCGAACGATATAAAGCGGACCGACCGCCATAGGAAGCCGTTAAGGAATTCAGCC ATCATGAAGCTCTCTGCTGGACTCGTTTCTTTGGCTATTGCCGTCACCTCTGCCTCTGCTCAAGCTGTAGGCCCT TGGGGCCAGTGTGGTGGTAGTGGATGGAGTGGTGCAACGAGTGAGTTCCATTGACTGTTCAGCCAAGAATCACCC TCACCGTATGGAATGACAGCTTGCGAGAGCGGCTATACTTGCCAGAAGCACAACGAATGGTACTCTCAATGCGTC CCTGGTACCTCCAGCGCGCCTCCCCCTCCCGTCACTCCCCAGCCGTCGACCACTGCCGCTCCTCCCGTCGTGACC CCGCCACCTCCCACCTCTGCGACTGGCTTCGTCAAGACCAACGGTACCCGCTTCGTTTTGGACGGAAAGCCGTAC ACTGTGGTTGGGTGAGCGCCCTAGTCCAAAATCACTTTGAATAGTGCTAACACGTATGCAGATCCAACTCGTACT GGGTCGGTCTTTCTGGACACAGCAGGGACAATATGAACCGGGCCTTTGCTGACATTGCAGCTGCTGGAGGCACCA CTGTCCGAACCTGGTGAGTAAGAGGAAATTCAAATAGGTAGTGATTCTGACGAAGGCCGTCTCCAGGGGTTTCAA CGAAGTCACTGCGTATGGCGGTATCCCCTATTATCAGATTTGGAACGGAAGGACGCCGTCCGTCAACACTGGCGC CAATGGTCTTCAAAACTTCGGTGAGAGAAGTCCTATGTCGAAAGCGCCTTTGCCATTTGCTGAACCCCTTCTCAG ACCAGGTCATCGCCGCGGCCAAGGCCAACGGCATCAAGCTCATCGTTGCCCTGTAAGCAAATTCACGAAGAGATG TCCCAAGGCTACTCAATATTCATACCTACTCGACAGGACGAACAACTGGTCCGATTATGGCGGCATGGACGTATA TGTGAGACAAATTCTCAACTCCAACAACCACGATTTGTTCTACACGGACCCGGACGTCAAGGTACGTGCCTTCAG GTTGCCTTTTCTGTGCTAGTTCACGCCACCTGACTCCCGTTTATCTAGGCGGCCTTCAAGAACTATATTAGGGCT TTCGTCGGGAGATACGTCAATGAAACAGGTATCCTTGGATGGGAGCTTGCGAACGAACCAAGGTGTCGTGGAAGC ACCGGGTATGAGTCGTTATTTGAAGAACCAAAGTCGGATTTTCTCATCATTTTGTTTAGCACCACCTCTGGCAGG TGCACACCGGCCACGATTACGGCTTGGGCACGGGAAATGTCTGCCTTCATCAAGTCTATTGACCCCAACCACCTG GTGGCCCTTGGAGACGAAGGCTTCTACAACCAACCCGGTCACCCGGTCTACCCATACCAGTATGCATGCATTCCT TGGTAGAGCGTTATGTACAAGACTCATCGGTTCCTTTTTTAGGGGCGGGGAAGGTATTGACTTCGACGTCAACCT TCAAATCGATACCCTCGACTTTGGTACTGTCCATGTAAGAGCAACTGTTGGTATCGGCGTAGACTCGTACTCACC ATTTTCACCGAAGGCCTATCCTGAGCACTGGGGTCAGCAAGGCAACGAAGTGGGCTTCGGAAACGATTGGATCAA GGACCACGCCGAATCCCAGAAGAGATACGGCAAGCCCGTCATCCTTGAGGAATACGGCGTAACCACCAACAAGCC AGCCGTTTACACTGAATGGCTCAGGACCATCCAAACCTCCGGCCTTGCTGGGGACCTCTACTGGTGGGTAGCATG TCATGCTCACCGACTCGACGCGACTAACCATTATACAGGCAAGCGGGATCTCGACTCCCAACTGGTAGCACTCAT GACGACGGATTCACTGTCTACCCTGACCAGCCAGCCTACCAGCTCTTGCGAAGCCACGCTGCCGCCATGAAGGCT CGCGGGTAGATAGATATACGACTATTATGGCGGTCAGTACAAGATAGATCTTTCAAACATAATGTACAAAAAGCC AAGGGCGAATCTCGCCGCTTTACAATTCTATGGTGGTGTCCATTTTGATCCATCCTTG |
Length | 2533 |