CopciAB_364856
Coprinopsis cinerea A43mutB43mut pab1-1 #326

General data

Systematic name CopciAB_364856 Strain Coprinopsis cinerea Okayama 7
Standard name - Synonyms 364856
Uniprot id Functional description
Location scaffold_10:1711281..1712479 Strand -
Gene length (nt) 1199 Transcript length (nt) 1065
CDS length (nt) 627 Protein length (aa) 208

Reciprocal best hits in model fungi

Strain name Gene / Protein name

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
0

Expression

Name Summary Attribution Assay type
Carbon metabolism Transcriptional changes along alternative morphogenetic paths of C. cinerea Xie et al. 2020 RNA-Seq
Sample Mean cpm SD cpm Se of mean
sclerotia 0.2478 0.299 0.1726
oidia 0.1786 0.0327 0.0189
vegetative_mycelium 0.2774 0.1684 0.0973
primordia 0.5925 0.4674 0.2698
hyphal_knot 0.4001 0.3353 0.1936
young_fruiting_body 0.1761 0.2039 0.1177
Complex carbon sources 1 (long incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control - glucose 0.3961 0.2839 0.1639
Wheat bran 0.7143 0.5412 0.3125
Horse manure 0.3355 0.0889 0.0513
Oak leaves 1.1614 1.222 0.7055
Hay 0.2266 0.2003 0.1156
Corn stalk 0.5785 0.1551 0.0896
Pectine 0.5371 0.0527 0.0304
Microcrystalline cellulose 1.8985 0.974 0.5624
Xylose 1.0526 0.4404 0.2543
Cellobiose 1.4078 0.3628 0.2094
Lignin 0.7417 0.8617 0.4975
Apple peels 0.2066 0.0472 0.0272
Coprinopsis challenged with bacteria Transcriptional response to Bacillus subtilis and Escherichia coli. Kombrink et al. 2018 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control 0.362 0.074 0.0427
Bsubtilis 0.145 0.0221 0.0128
Ecoli 0.0684 0.0593 0.0342
Early development 1 Time series expression profiling of basidiospore and oidium germination Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
BS 0h 0.0499 0.0865 0.0499
BS 4h 0 0 0
BS 8h 0.0339 0.0586 0.0339
BS 12h 0 0 0
Oidia 0 h 0.2334 0.3073 0.1774
Oidia 18 h 0.0276 0.0479 0.0276
Sclerotia 0 0 0
Early development 2 Time series expression profiling of mycelial growth, light induction and fruiting body initiation. Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
DM 12h 0.183 0.169 0.0976
DM 36h 0.1699 0.0905 0.0523
DM 60h 0.0563 0.0975 0.0563
DM 84h 0 0 0
DM 108h 0.0571 0.0507 0.0293
DM 132h 0.0862 0.0833 0.0481
DM 156hAE 0.1361 0.1214 0.0701
ELI1hAE 0.1796 0.3111 0.1796
ELI2hAE 0.0851 0.1475 0.0851
LI2hAE 0.2203 0.1131 0.0653
LI6hAE 0.1609 0.2786 0.1609
LI12hAE 0.5182 0.2378 0.1373
LI18hAE 0.1701 0.2946 0.1701
LI 24hAE 0.351 0.2682 0.1549
DM 156hAM 0.1736 0.0786 0.0454
ELI1hAM 0.2173 0.3015 0.1741
ELI2hAM 0 0 0
LI2hAM 0 0 0
LI6hAM 0.1188 0.2058 0.1188
LI12hAM 0.3065 0.2744 0.1584
LI18hAM 0.0702 0.07 0.0404
LI 24hAM 0.0292 0.0506 0.0292
LI 24hHK 0.1071 0.0928 0.0536
L/D 6h 0.7471 0.2795 0.1614
L/D 12h 0.4897 0.4707 0.2718
L/D 18h 0.5249 0.4402 0.2541
L/D 24h 0.3834 0.333 0.1922
Fruiting body development RNA-Seq analysis of fruiting body development Krizsan et al. 2019 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Vegetative mycelium 0.6557 0.2017 0.1165
Hyphal knots 0.7896 0.1979 0.1142
Primordium 1 0.4115 0.0546 0.0315
Primordium 2 0.4482 0.2764 0.1596
Young Fruiting body cap 0.2655 0.165 0.0953
Younf fruiting body gill 0.2776 0.0895 0.0517
Young fruiting body stipe 1.072 0.4026 0.2324
Mature fruiting body cap_gill 1.1963 0.9548 0.5512
Mature fruiting body stipe 0.2705 0.1897 0.1095
Nitrogen sources (12h incubation) Expression profiling on diverse nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Complete medium - control 0.1536 0.2191 0.1265
NH4NO3 0.2362 0.1704 0.0984
Proline 0.1977 0.0532 0.0307
Tryptophan 0.1932 0.1773 0.1023
Isoleucin 0.1676 0.1526 0.0881
Arginine 0.1076 0.1035 0.0598
Metionine 0.0175 0.0303 0.0175
NaNO3 0.0832 0.1441 0.0832
Plant biomass (12h incubation) Expression profiling on diverse plant biomasses as carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 0.1536 0.2191 0.1265
Citrus peel 0.0527 0.0459 0.0265
Poplar leaves 0.2576 0.0817 0.0472
Typha leaves 0.0952 0.092 0.0531
Overwintered Salix leaves 0.2371 0.2353 0.1359
Reed flowering 0.1334 0.2311 0.1334
Tigernut 0.1829 0.1584 0.0914
Energy cane 0.1292 0.1411 0.0815
Guar gum 0.3419 0.3216 0.1857
Apple peels 0.4826 0.4106 0.2371
Cellobiose 0.1378 0.059 0.0341
Corn stalk 0.6233 0.4674 0.2699
Horse manure 0.1616 0.1076 0.0621
Lignin 0.0939 0.0862 0.0497
Microcrystalline cellulose 0.3703 0.1597 0.0922
Oak leaves 0.2023 0.2202 0.1271
Pectin esterified 0.4923 0.4122 0.238
Poplar sawdust 0.3944 0.2698 0.1558
Wheat bran 0.431 0.3579 0.2067
Chlamydomonas reinhardtii 0.2401 0.1816 0.1049
Vertatryl alcohol 0 0 0
Furfural 0 0 0
Autoclaved mycelium 0.2085 0.3611 0.2085
Simple and complex carbon and nitrogen sources Expression profiling on diverse complex carbon and nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 0.7778 0.4316 0.2492
Ribose 0.311 0.0314 0.0181
Mannose 0.7543 0.0664 0.0469
Fructose 0.7028 0.2148 0.124
Arabinose 0.6988 0.4321 0.2495
Xylose 0.6949 0.2042 0.1179
Galacturonic acid 0.6351 0.1384 0.0799
Rhamnogalacturonan 0.7105 0.3236 0.1868
Pectin esterified 1.1387 0.239 0.138
Polygalacturonic acid 0.9627 0.4223 0.2438
Sodium acetate 0.5685 0.272 0.157
No nitrogen 1.0354 0.3508 0.2025
BSA 1.1746 0.7247 0.4184
Glutamine 0.6956 0.1414 0.0816
No phosphate 0.5649 0.1744 0.1007
No carbon 0.8826 0.317 0.2242
No sulphur 0.7627 0.3588 0.2071
Simple and complex carbon sources (12h incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 0.1536 0.2191 0.1265
Amylose 0.5371 0.1934 0.1117
Fucose 0.4593 0.251 0.1449
Galactose 0.52 0.1016 0.0587
Lactose 0.4619 0.2285 0.1319
Maltose 0.4756 0.1474 0.0851
Mannitol 0.3159 0.1056 0.0609
Rhamnose 0.4915 0.245 0.1415
Sorbitol 0.5982 0.0956 0.0552
Trehalose 0.4462 0.172 0.0993
Glycerol 0.2283 0.1075 0.062
Glucuronic acid 0.666 0.3167 0.1829
Arabinan 0.6663 0.4222 0.2438
Galactan 0.149 0.1197 0.0691
Galactomannan 0.437 0.1785 0.1031
Glucan 0.1551 0.0838 0.0484
Xylan 0.3691 0.2829 0.1633
Xyloglucan 0.4763 0.2418 0.1396
Arabinogalactan 0.4493 0.2349 0.1356
Pectin 0.2998 0.2162 0.1248
Rhamnogalacturonan 0.3687 0.1682 0.0971
Polygalacturonic acid 0.2274 0.0487 0.0281
Mannan 0.3327 0.1453 0.0839
Amylopectin 0.16 0.1603 0.0925
Inulin 0.4184 0.1394 0.0805
BSA 0.1082 0.1233 0.0712
Starvation induced by water agar transfer Expression profiling on starvation induced by transfer to water agar Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Control 0.0563 0.0975 0.0563
2h WAT 0.0318 0.055 0.0318
4h WAT 0.0277 0.048 0.0277
8h WAT 0 0 0
16h WAT 0.1147 0.1867 0.1078
24h WAT 0.0829 0.1436 0.0829
WAT hyphal knot -30h 0.2634 0.2321 0.134
WAT hyphal knot -22h 0 0 0
WAT hyphal knot -15h 0 0 0
WAT hyphal knot -7.5h 0.1203 0.1051 0.0607
WAT hyphal knot 0.3087 0.5032 0.2905
WAT hyphal knot +7.5h 0.0886 0.1535 0.0886
Straw time series Time series expression profiling on straw as a carbon source Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 0.3619 0.3379 0.1951
Straw 3h 0.2916 0.1364 0.0788
Straw 6h 0.6548 0.5231 0.302
Straw 12h 0.6145 0.2733 0.1578
Straw 24h 0.4464 0.3537 0.2042
Stress conditions 1 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 0 0 0
Frost (-20C, 30min) 0.0431 0.0375 0.0217
Heat shock (47C, 2h) 0.1323 0.2291 0.1323
High CO2 0.0848 0.1469 0.0848
Drought (4% agar, 12h) 0.0273 0.0472 0.0273
Oxidative (1mM H2O2, 3h) 0 0 0
Acidic (pH4, 3h) 0 0 0
Alkaline (pH9, 3h) 0.0638 0.0553 0.032
Osmotic (sorbitol 2h) 0 0 0
CongoRed (3h) 0 0 0
Cobalt chloride control 0.1599 0.1081 0.0624
Cobalt chloride 2mM 0.0368 0.0479 0.0277
Stress conditions 2 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 0.0498 0.0863 0.0498
Cold stimulation 0.1853 0.321 0.1853
Scratched surface 0.1082 0.1263 0.0729
Ca2+, 200mM, 24h 0 0 0
Cu2+, 2mM, 6h 0 0 0
Voriconazole 0.0498 0.0863 0.0498
Trichoderma interaction, early 0.041 0.0709 0.041
Trichoderma interaction 60h 1.2072 1.0463 0.6041
Cobalt chloride 2mM repeat 0 0 0
Hypoxia 0 0 0
Hypoxia control 0 0 0
Protoplastation control 0.2173 0.3074 0.2173
Protoplastation 3.5h 0 0 0
Protoplastation 1.5h 0 0 0

General data

Systematic name -
Protein id CopciAB_364856.T0
Description

Annotation summary

0 100 200 208

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
Pfam PF17667 Fungal protein kinase IPR040976 2 74

SignalP

Prediction Start End Score
No records

Transmembrane domains

Domain n Start End Length
No records

InterPro

Accession Description
IPR040976 Fungal-type protein kinase

GO

Go id Term Ontology
No records

KEGG

KEGG Orthology
No records

EggNOG

COG category Description
No records

CAZy

Class Family Subfamily
No records

Transcription factor

Group
No records

Conservation of CopciAB_364856 across fungi.

Arrow shows the origin of gene family containing CopciAB_364856.

Protein

Sequence id CopciAB_364856.T0
Sequence >CopciAB_364856.T0
MGRISDLEYCKRYQQASAHGPLSGAREFMSLDVRRWGFMHMVRPNNLRKEYPEVTFHHHYLHDLESVYWLLIWYM
VSHAPHKEGVPRVIDHVSWAKLVDDLFGTGIDSQEPTVHWNNQSVTCTAMMNFWDDQDSLEGVCDILNLPVLFKK
EYGTLQTAEQTECGETRWPDRVFTEGLYIAFEKAVNEALKSVPSDCQWLPLWDSLSSQ
Length 208

Coding

Sequence id CopciAB_364856.T0
Sequence >CopciAB_364856.T0
ATGGGAAGAATCTCAGATCTGGAATATTGCAAACGGTACCAGCAGGCGAGCGCCCATGGTCCTCTTTCGGGTGCA
CGGGAGTTCATGTCCCTCGATGTTCGCAGATGGGGATTCATGCACATGGTTCGACCGAACAATCTTCGAAAAGAA
TACCCCGAAGTGACTTTCCATCATCATTATCTGCATGACCTCGAGTCGGTATATTGGTTACTCATCTGGTACATG
GTCTCCCATGCGCCTCACAAGGAGGGCGTTCCCCGTGTCATCGACCACGTCTCCTGGGCCAAATTGGTGGACGAT
TTGTTTGGAACGGGAATTGATAGCCAAGAACCCACCGTGCATTGGAACAACCAGTCTGTCACATGTACTGCTATG
ATGAACTTCTGGGATGATCAGGACAGTCTAGAAGGCGTCTGCGATATTCTGAACCTGCCGGTTCTTTTCAAGAAG
GAGTACGGAACACTTCAAACAGCAGAACAAACGGAATGTGGAGAGACTCGCTGGCCGGACAGGGTTTTTACCGAA
GGTCTTTACATCGCATTTGAAAAGGCAGTCAATGAAGCTCTGAAGAGCGTTCCCAGCGATTGCCAGTGGCTCCCC
TTATGGGACTCTCTCTCATCCCAGTAG
Length 627

Transcript

Sequence id CopciAB_364856.T0
Sequence >CopciAB_364856.T0
ATCAAGCACCCTCAGTCTCATACAATCGGTGCGAGGGACCACGTCCCGAGCTGTCTTCAACCTAGTGGAACTCAA
CAGACCTCCTGGAATTCCGACCCACGTACAATCCAGGCCGTAGTTGATGAGCTTGGAGTCCCACAGGGGCACCTT
GTCCTCAAGCCAAAGGCTAGGGGATTTGCTTCAGCAAAGGCAACTTACGCCGCCTTAAAACAGGACTTTGGACAT
GTCACTGTTCCCGTCCAACGGAACCTGCAACGCCAATTGCGGAATCGCCGACGATTCGTTACACTGGAATCCTCG
ACGTTCTACAAAGCGCCTACTTTTTTTGTGGCGTGCCAGGCGGTAATAGACTACGTTAAAGCCTTGAATATACTC
AGCCACGACCCCCAAACGAGCGAATGGATGGGAAGAATCTCAGATCTGGAATATTGCAAACGGTACCAGCAGGCG
AGCGCCCATGGTCCTCTTTCGGGTGCACGGGAGTTCATGTCCCTCGATGTTCGCAGATGGGGATTCATGCACATG
GTTCGACCGAACAATCTTCGAAAAGAATACCCCGAAGTGACTTTCCATCATCATTATCTGCATGACCTCGAGTCG
GTATATTGGTTACTCATCTGGTACATGGTCTCCCATGCGCCTCACAAGGAGGGCGTTCCCCGTGTCATCGACCAC
GTCTCCTGGGCCAAATTGGTGGACGATTTGTTTGGAACGGGAATTGATAGCCAAGAACCCACCGTGCATTGGAAC
AACCAGTCTGTCACATGTACTGCTATGATGAACTTCTGGGATGATCAGGACAGTCTAGAAGGCGTCTGCGATATT
CTGAACCTGCCGGTTCTTTTCAAGAAGGAGTACGGAACACTTCAAACAGCAGAACAAACGGAATGTGGAGAGACT
CGCTGGCCGGACAGGGTTTTTACCGAAGGTCTTTACATCGCATTTGAAAAGGCAGTCAATGAAGCTCTGAAGAGC
GTTCCCAGCGATTGCCAGTGGCTCCCCTTATGGGACTCTCTCTCATCCCAGTAGTATACTTAACAATCGTAGATT
TCATAGTGTTTGGCA
Length 1065

Gene

Sequence id CopciAB_364856.T0
Sequence >CopciAB_364856.T0
ATCAAGCACCCTCAGTCTCATACAATCGGTGCGAGGGACCACGTCCCGAGCTGTCTTCAACCTAGTGGAACTCAA
CAGACCTCCTGGAATTCCGACCCACGTACAATCCAGGCCGTAGTTGATGAGCTTGGAGTCCCACAGGGGCACCTT
GTCCTCAAGCCAAAGGCTAGGGGATTTGCTTCAGCAAAGGCAACTTACGCCGCCTTAAAACAGGACTTTGGACAT
GTCACTGTTCCCGTCCAACGGAACCTGCAACGCCAATTGCGGAATCGCCGACGATTCGTTACACTGGAATCCTCG
ACGTTCTACAAAGCGCCTACTTTTTTTGTGGCGTGCCAGGCGGTAATAGACTACGTTAAAGGTGAGTCCCCACGT
CCACGTCGGTCGCCTTCACCTGGACCGTCCCCTGACCTCTGGTACTATGTGGTAGCCTTGAATATACTCAGCCAC
GACCCCCAAACGAGCGAATGGATGGGAAGAATCTCAGATCTGGAATATTGCAAACGGTACCAGCAGGCGAGCGCC
CATGGTCCTCTTTCGGTAAGCGACCAGTACCTGGCCTCAGCTACACAGAGTTCAAATGTCTTAAATTGCGACGCT
TCTAGGGTGCACGGGAGTTCATGTCCCTCGATGTTCGCAGATGGGGATTCATGCACATGGTTCGACCGAACAATC
TTCGAAAAGAATACCCCGAAGTGACTTTCCATCATCATTATCTGCATGACCTCGAGTCGGTATATTGGTTACTCA
TCTGGTACATGGTCTCCCATGCGCCTCACAAGGAGGGCGTTCCCCGTGTCATCGACCACGTCTCCTGGGCCAAAT
TGGTGGACGATTTGTTTGGAACGGGAATTGATAGCCAAGAACCCACCGTGCATTGGAACAACCAGTCTGTCACAT
GTACTGCTATGATGAACTTCTGGGATGATCAGGACAGTCTAGAAGGCGTCTGCGATATTCTGAACCTGCCGGTTC
TTTTCAAGAAGGAGTACGGAACACTTCAAACAGCAGAACAAACGGAATGTGGAGAGACTCGCTGGCCGGACAGGG
TTTTTACCGAAGGTCTTTACATCGCATTTGAAAAGGCAGTCAATGAAGCTCTGAAGAGCGTTCCCAGCGATTGCC
AGTGGCTCCCCTTATGGGACTCTCTCTCATCCCAGTAGTATACTTAACAATCGTAGATTTCATAGTGTTTGGCA
Length 1199