CopciAB_370932
Coprinopsis cinerea A43mutB43mut pab1-1 #326

General data

Systematic name CopciAB_370932 Strain Coprinopsis cinerea Okayama 7
Standard name MKK1 Synonyms 370932
Uniprot id Functional description Protein tyrosine kinase
Location scaffold_10:396612..397951 Strand -
Gene length (nt) 1340 Transcript length (nt) 1078
CDS length (nt) 960 Protein length (aa) 319

Reciprocal best hits in model fungi

Strain name Gene / Protein name

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
0

Expression

Name Summary Attribution Assay type
Carbon metabolism Transcriptional changes along alternative morphogenetic paths of C. cinerea Xie et al. 2020 RNA-Seq
Sample Mean cpm SD cpm Se of mean
sclerotia 19.8923 3.5692 2.0607
oidia 6.6117 2.0521 1.1848
vegetative_mycelium 10.1048 2.0293 1.1716
primordia 3.3683 0.4906 0.2832
hyphal_knot 16.8381 3.1907 1.8422
young_fruiting_body 2.7951 0.4202 0.2426
Complex carbon sources 1 (long incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control - glucose 19.1942 2.5321 1.4619
Wheat bran 49.2613 5.8778 3.3935
Horse manure 43.6527 10.4823 6.0519
Oak leaves 38.6109 5.2136 3.0101
Hay 53.931 8.7425 5.0475
Corn stalk 38.2977 5.4224 3.1306
Pectine 29.4287 7.5006 4.3305
Microcrystalline cellulose 38.3081 10.1694 5.8713
Xylose 15.7953 3.4457 1.9894
Cellobiose 25.0144 3.3572 1.9383
Lignin 58.8861 17.1271 9.8884
Apple peels 37.1521 4.4698 2.5806
Coprinopsis challenged with bacteria Transcriptional response to Bacillus subtilis and Escherichia coli. Kombrink et al. 2018 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control 10.7611 0.6534 0.3773
Bsubtilis 10.9103 0.525 0.3031
Ecoli 14.3075 1.8349 1.0594
Early development 1 Time series expression profiling of basidiospore and oidium germination Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
BS 0h 0.0582 0.1007 0.0582
BS 4h 0.7141 0.3501 0.2022
BS 8h 1.8615 0.4231 0.2443
BS 12h 1.9209 0.8727 0.5038
Oidia 0 h 0.2288 0.2481 0.1432
Oidia 18 h 0.5999 0.2067 0.1193
Sclerotia 20.0113 5.642 3.2574
Early development 2 Time series expression profiling of mycelial growth, light induction and fruiting body initiation. Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
DM 12h 7.9954 2.9288 1.6909
DM 36h 3.4555 0.6671 0.3852
DM 60h 3.6373 0.2092 0.1208
DM 84h 5.4153 2.5475 1.4708
DM 108h 6.5926 0.8033 0.4638
DM 132h 9.9956 4.1148 2.3757
DM 156hAE 10.1383 1.4265 0.8236
ELI1hAE 4.7228 1.1568 0.6679
ELI2hAE 4.8684 0.2739 0.1582
LI2hAE 3.8449 1.4755 0.8519
LI6hAE 4.2244 1.3391 0.7731
LI12hAE 3.5679 0.3842 0.2218
LI18hAE 5.6611 0.9288 0.5362
LI 24hAE 7.9356 0.178 0.1028
DM 156hAM 9.3538 1.537 0.8874
ELI1hAM 5.7821 2.5314 1.4615
ELI2hAM 3.9786 0.8938 0.516
LI2hAM 4.5964 1.044 0.6027
LI6hAM 5.369 1.5657 0.9039
LI12hAM 6.6352 3.7871 2.1865
LI18hAM 9.0115 4.6624 2.6918
LI 24hAM 13.5497 5.9346 3.4263
LI 24hHK 12.819 6.1096 3.5274
L/D 6h 8.4141 0.0649 0.0375
L/D 12h 4.4397 1.0859 0.6269
L/D 18h 6.5943 1.9332 1.1161
L/D 24h 5.6071 0.2094 0.1209
Fruiting body development RNA-Seq analysis of fruiting body development Krizsan et al. 2019 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Vegetative mycelium 45.7614 27.9061 16.1116
Hyphal knots 18.0108 6.1811 3.5687
Primordium 1 9.9689 2.9348 1.6944
Primordium 2 15.091 4.7262 2.7287
Young Fruiting body cap 16.5301 11.8586 6.8466
Younf fruiting body gill 6.1407 1.7118 0.9883
Young fruiting body stipe 4.1904 1.4058 0.8117
Mature fruiting body cap_gill 0.7755 0.4902 0.283
Mature fruiting body stipe 3.2313 1.2099 0.6985
Nitrogen sources (12h incubation) Expression profiling on diverse nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Complete medium - control 3.005 0.8717 0.5033
NH4NO3 3.9093 1.2566 0.7255
Proline 4.3967 1.8497 1.0679
Tryptophan 4.4504 2.0386 1.177
Isoleucin 3.6731 0.7607 0.4392
Arginine 1.6769 0.778 0.4492
Metionine 2.5414 0.4209 0.243
NaNO3 1.7951 0.7962 0.4597
Plant biomass (12h incubation) Expression profiling on diverse plant biomasses as carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 3.005 0.8717 0.5033
Citrus peel 2.0665 0.4378 0.2528
Poplar leaves 2.6561 0.7207 0.4161
Typha leaves 2.4226 0.2417 0.1395
Overwintered Salix leaves 2.9411 0.5327 0.3076
Reed flowering 2.0745 0.1876 0.1083
Tigernut 1.3983 0.4399 0.254
Energy cane 2.8215 0.4142 0.2391
Guar gum 2.8419 1.1856 0.6845
Apple peels 2.133 0.2497 0.1442
Cellobiose 1.9416 0.2478 0.1431
Corn stalk 4.7024 2.3374 1.3495
Horse manure 3.0625 0.6345 0.3663
Lignin 2.6056 1.0589 0.6114
Microcrystalline cellulose 2.8612 0.5456 0.315
Oak leaves 4.4185 0.5076 0.2931
Pectin esterified 3.1117 1.7333 1.0007
Poplar sawdust 5.446 2.1452 1.2385
Wheat bran 7.7615 2.6263 1.5163
Chlamydomonas reinhardtii 3.5473 1.3083 0.7553
Vertatryl alcohol 15.9314 1.4237 0.822
Furfural 3.4967 1.484 0.8568
Autoclaved mycelium 2.4613 0.0816 0.0471
Simple and complex carbon and nitrogen sources Expression profiling on diverse complex carbon and nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 11.7711 1.2295 0.7098
Ribose 14.3417 1.2461 0.7194
Mannose 9.4873 0.9906 0.7005
Fructose 14.5437 2.9555 1.7064
Arabinose 13.544 2.4357 1.4062
Xylose 13.6566 1.8314 1.0574
Galacturonic acid 11.225 2.341 1.3516
Rhamnogalacturonan 18.039 2.2185 1.2808
Pectin esterified 14.928 0.9552 0.5515
Polygalacturonic acid 15.4467 2.5377 1.4651
Sodium acetate 11.7325 2.7376 1.5806
No nitrogen 14.3734 1.1166 0.6447
BSA 14.5539 1.9063 1.1006
Glutamine 12.9223 0.8062 0.4655
No phosphate 12.3894 1.7643 1.0186
No carbon 9.8293 2.3279 1.6461
No sulphur 8.9402 0.5067 0.2925
Simple and complex carbon sources (12h incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 3.005 0.8717 0.5033
Amylose 5.9804 1.1269 0.6506
Fucose 6.6722 0.8202 0.4736
Galactose 5.3347 0.4369 0.2522
Lactose 4.2944 0.1634 0.0944
Maltose 4.5282 1.1898 0.6869
Mannitol 3.1892 0.5067 0.2925
Rhamnose 5.4896 4.1355 2.3876
Sorbitol 5.885 2.8546 1.6481
Trehalose 3.558 2.8445 1.6423
Glycerol 5.1299 3.3507 1.9345
Glucuronic acid 6.576 1.9238 1.1107
Arabinan 6.0592 0.963 0.556
Galactan 4.4404 0.3207 0.1852
Galactomannan 3.7625 1.3573 0.7837
Glucan 4.4551 1.873 1.0814
Xylan 3.673 0.6714 0.3876
Xyloglucan 5.5465 1.1595 0.6694
Arabinogalactan 4.2565 0.1624 0.0937
Pectin 9.6557 4.6674 2.6947
Rhamnogalacturonan 7.7351 5.8636 3.3853
Polygalacturonic acid 7.6727 2.4413 1.4095
Mannan 5.7588 1.5236 0.8796
Amylopectin 6.5478 3.2154 1.8564
Inulin 6.1168 0.1856 0.1072
BSA 0.8056 0.3428 0.1979
Starvation induced by water agar transfer Expression profiling on starvation induced by transfer to water agar Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Control 3.6373 0.2092 0.1208
2h WAT 5.7702 2.5455 1.4697
4h WAT 7.6242 0.2058 0.1188
8h WAT 10.0801 2.5764 1.4875
16h WAT 11.8968 1.7472 1.0087
24h WAT 12.0723 0.8539 0.493
WAT hyphal knot -30h 3.869 1.8244 1.0533
WAT hyphal knot -22h 3.9132 1.96 1.1316
WAT hyphal knot -15h 5.9271 0.1577 0.0911
WAT hyphal knot -7.5h 7.006 1.2121 0.6998
WAT hyphal knot 8.413 0.6429 0.3712
WAT hyphal knot +7.5h 8.197 1.6615 0.9593
Straw time series Time series expression profiling on straw as a carbon source Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 6.0814 1.7673 1.0204
Straw 3h 30.8875 21.3719 12.339
Straw 6h 16.4472 15.4879 8.942
Straw 12h 6.0494 2.6578 1.5345
Straw 24h 5.6466 2.7896 1.6106
Stress conditions 1 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 2.1092 0.748 0.4318
Frost (-20C, 30min) 11.8839 3.3388 1.9276
Heat shock (47C, 2h) 2.515 1.7688 1.0212
High CO2 8.8842 2.7646 1.5961
Drought (4% agar, 12h) 10.4567 1.2834 0.741
Oxidative (1mM H2O2, 3h) 8.2664 0.8085 0.4668
Acidic (pH4, 3h) 4.5853 3.1199 1.8013
Alkaline (pH9, 3h) 2.9669 1.2068 0.6967
Osmotic (sorbitol 2h) 5.2921 3.6326 2.0973
CongoRed (3h) 5.0808 2.0137 1.1626
Cobalt chloride control 12.5805 2.9823 1.7218
Cobalt chloride 2mM 21.286 2.8259 1.6315
Stress conditions 2 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 6.3752 1.9994 1.1543
Cold stimulation 9.4221 1.141 0.6588
Scratched surface 1.3904 0.8251 0.4764
Ca2+, 200mM, 24h 28.1883 4.0664 2.3477
Cu2+, 2mM, 6h 3.7571 1.2038 0.695
Voriconazole 4.9892 0.9635 0.5563
Trichoderma interaction, early 3.3346 1.0448 0.6032
Trichoderma interaction 60h 1.7672 3.0609 1.7672
Cobalt chloride 2mM repeat 4.1781 1.4745 0.8513
Hypoxia 7.2869 1.6946 0.9784
Hypoxia control 12.4542 2.2769 1.3146
Protoplastation control 16.4379 2.2643 1.6011
Protoplastation 3.5h 7.2199 2.1267 1.5038
Protoplastation 1.5h 19.384 4.6066 3.2573

General data

Systematic name MKK1
Protein id CopciAB_370932.T0
Description Protein tyrosine kinase

Annotation summary

0 100 200 300 319

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
Pfam PF00069 Protein kinase domain IPR000719 49 295

SignalP

Prediction Start End Score
No records

Transmembrane domains

Domain n Start End Length
No records

InterPro

Accession Description
IPR011009 Protein kinase-like domain superfamily
IPR000719 Protein kinase domain

GO

Go id Term Ontology
GO:0004672 protein kinase activity MF
GO:0005524 ATP binding MF
GO:0006468 protein phosphorylation BP

KEGG

KEGG Orthology
K08294

EggNOG

COG category Description
T Protein tyrosine kinase

CAZy

Class Family Subfamily
No records

Transcription factor

Group
No records

Conservation of CopciAB_370932 across fungi.

Arrow shows the origin of gene family containing CopciAB_370932.

Protein

Sequence id CopciAB_370932.T0
Sequence >CopciAB_370932.T0
MTHLDPPITSSTRRAQINPPPLAIQTTEWSDDRFEEVEIIASRNRRLEKVWDKETGAIVVRKSLSYEPGNAASGP
GDVIDELKRFTHLRHTNIIIIHGWYLSRWGLPRVLMEYCEGGSLESINERIIEKNVTVEERIAGQVAEGILQGLS
YLFSQDLIHNSLEPANILFSKGGLVKLSGHPWAEIVHQGAHTGRRLYYMSPEQIQGLATSRGPSDIWSAGVVLLE
FVQKEFPWGSDLSPVDIMMNIVHGEPPILEDNTADGTGWSNDLKDFLNQMLVNAPSGRKTAMELLEHSWIKSVIA
QENEMEVWLAQLWDWPQAS
Length 319

Coding

Sequence id CopciAB_370932.T0
Sequence >CopciAB_370932.T0
ATGACGCACCTCGATCCCCCCATTACATCGTCGACGAGGCGCGCCCAGATTAATCCGCCGCCCCTGGCCATTCAA
ACCACAGAATGGTCCGACGACAGGTTCGAGGAAGTAGAGATAATCGCCAGTAGAAACCGCCGTCTCGAAAAGGTC
TGGGATAAAGAGACTGGAGCTATCGTCGTTCGAAAGAGCTTGTCGTACGAGCCAGGGAACGCCGCTTCAGGTCCT
GGAGACGTGATTGACGAGCTGAAGAGATTCACACACCTTCGCCACACCAATATTATTATCATCCATGGGTGGTAT
CTGTCGCGATGGGGACTCCCGAGAGTCTTGATGGAGTACTGCGAAGGAGGATCGCTGGAGTCCATTAACGAACGG
ATCATAGAGAAGAACGTCACTGTGGAAGAGCGGATTGCAGGCCAAGTAGCTGAAGGGATCCTACAAGGCCTTTCA
TATCTATTTTCACAAGATTTAATTCATAACAGCCTAGAGCCAGCAAACATCCTTTTCAGTAAAGGAGGCCTGGTT
AAGCTTTCAGGGCATCCCTGGGCTGAAATAGTCCACCAGGGGGCGCACACAGGCCGTAGACTCTACTACATGAGC
CCAGAGCAAATCCAAGGTCTGGCAACGTCGAGGGGTCCATCCGATATTTGGTCTGCGGGGGTTGTCCTTCTCGAA
TTTGTACAGAAGGAGTTCCCTTGGGGGAGCGACCTCTCCCCGGTAGACATTATGATGAACATTGTTCACGGTGAA
CCCCCGATTCTTGAAGATAACACTGCAGACGGGACTGGCTGGAGCAATGACTTGAAGGACTTCCTCAACCAAATG
CTCGTGAATGCACCGTCTGGCAGAAAGACTGCCATGGAACTGTTAGAGCACTCATGGATCAAGAGTGTTATCGCT
CAGGAGAATGAGATGGAGGTGTGGCTGGCGCAATTGTGGGACTGGCCTCAGGCTTCGTGA
Length 960

Transcript

Sequence id CopciAB_370932.T0
Sequence >CopciAB_370932.T0
ACGCTTCTCGCTTCCCTCGCCATGACGCACCTCGATCCCCCCATTACATCGTCGACGAGGCGCGCCCAGATTAAT
CCGCCGCCCCTGGCCATTCAAACCACAGAATGGTCCGACGACAGGTTCGAGGAAGTAGAGATAATCGCCAGTAGA
AACCGCCGTCTCGAAAAGGTCTGGGATAAAGAGACTGGAGCTATCGTCGTTCGAAAGAGCTTGTCGTACGAGCCA
GGGAACGCCGCTTCAGGTCCTGGAGACGTGATTGACGAGCTGAAGAGATTCACACACCTTCGCCACACCAATATT
ATTATCATCCATGGGTGGTATCTGTCGCGATGGGGACTCCCGAGAGTCTTGATGGAGTACTGCGAAGGAGGATCG
CTGGAGTCCATTAACGAACGGATCATAGAGAAGAACGTCACTGTGGAAGAGCGGATTGCAGGCCAAGTAGCTGAA
GGGATCCTACAAGGCCTTTCATATCTATTTTCACAAGATTTAATTCATAACAGCCTAGAGCCAGCAAACATCCTT
TTCAGTAAAGGAGGCCTGGTTAAGCTTTCAGGGCATCCCTGGGCTGAAATAGTCCACCAGGGGGCGCACACAGGC
CGTAGACTCTACTACATGAGCCCAGAGCAAATCCAAGGTCTGGCAACGTCGAGGGGTCCATCCGATATTTGGTCT
GCGGGGGTTGTCCTTCTCGAATTTGTACAGAAGGAGTTCCCTTGGGGGAGCGACCTCTCCCCGGTAGACATTATG
ATGAACATTGTTCACGGTGAACCCCCGATTCTTGAAGATAACACTGCAGACGGGACTGGCTGGAGCAATGACTTG
AAGGACTTCCTCAACCAAATGCTCGTGAATGCACCGTCTGGCAGAAAGACTGCCATGGAACTGTTAGAGCACTCA
TGGATCAAGAGTGTTATCGCTCAGGAGAATGAGATGGAGGTGTGGCTGGCGCAATTGTGGGACTGGCCTCAGGCT
TCGTGAATGTCAGAGCAAAGGTCATAATTGGATTCAATAGTACATGACAGTCAACAAGTCCATTGTACAGCCGTT
CAAACCAACGAAACATTTTGGTGAACCT
Length 1078

Gene

Sequence id CopciAB_370932.T0
Sequence >CopciAB_370932.T0
ACGCTTCTCGCTTCCCTCGCCATGACGCACCTCGATCCCCCCATTACATCGTCGACGAGGCGCGCCCAGATTAAT
CCGCCGCCCCTGGCCATTCAAACCACAGAATGGTCCGACGACAGGTTCGAGGAAGTAGAGATAATCGCCAGTAGA
AACCGCCGTCTCGAAAAGGTCTGGGATAAAGAGACTGGAGCTATCGTCGTTCGAAAGAGCTTGTCGTACGAGCCA
GGGAACGCCGCTTCAGGTCCTGGAGACGTGATTGACGAGCTGAAGAGATTCACACACCTTCGCCACACCAATATT
ATTATCATCCATGGGTGGTATCTGTCGCGATGGGGACTCCCGAGAGTCTTGATGGAGTACTGCGAAGGAGGATCG
CTGGAGTCCATTAACGAACGGATCATAGAGAAGAACGTCACTGTGGAAGAGCGGATTGCAGGCCAAGTAGCTGAA
GGGGTGAGCACGCCATGACTTGTCTGTTCGACGGCCAGATGTCCTGACCTCGTTCTCGAAGATCCTACAAGGCCT
TTCATATCTATTTTCACAAGATTTAATTCATAACAGCCTAGAGCCAGCAAACATCCTTTTCAGTAAAGGAGGCCT
GGTTAAGCTTTCAGGGCATCCCTGGGCTGAAATAGTCCACCAGGGGGCGCACACAGGCCGTAGACTCTACTACAT
GAGCGTTGAGTATCTCTTACGTCTCCTTTCTCCACGCCAGGGAGATAACCTGACGATTTTGCCATTCCCCATTCA
GCCAGAGCAAATCCAAGGTCTGGCAACGTCGAGGGGTCCATCCGATATTTGGTCTGCGGGGGTTGTCCTTCTCGA
ATTTGTACAGAAGGAGTTCCCTTGGGGGAGCGACCTCTCCCCGGTAGACATTATGATGAACATTGTTCACGGTGA
AGTAAGTGCTCTTCCTCCAGCCTTGTTGTTGCGCTTTATCAAGTTTTCATCTTGAACCCCATGGCAGCCCCCGAT
TCTTGAAGATAACACTGCAGACGGGACTGGCTGGAGCAATGACTTGAAGGACTTCCTCAACCAAATGTGAGGCAC
AAAGTTCGCTTCTTGCCGTCACAGTCTAAAGACTCACTCATGTTCCCTAAACCAAAGGCTCGTGAATGCACCGTC
TGGCAGAAAGACTGCCATGGAACTGTTAGAGCACTCATGGATCAAGAGTGTTATCGCTCAGGAGAATGAGATGGA
GGTGTGGCTGGCGCAATTGTGGGACTGGCCTCAGGCTTCGTGAATGTCAGAGCAAAGGTCATAATTGGATTCAAT
AGTACATGACAGTCAACAAGTCCATTGTACAGCCGTTCAAACCAACGAAACATTTTGGTGAACCT
Length 1340