CopciAB_372582
Coprinopsis cinerea A43mutB43mut pab1-1 #326

General data

Systematic name CopciAB_372582 Strain Coprinopsis cinerea Okayama 7
Standard name - Synonyms 372582
Uniprot id Functional description other AgaK1 protein kinase
Location scaffold_11:891306..892974 Strand -
Gene length (nt) 1669 Transcript length (nt) 1327
CDS length (nt) 1155 Protein length (aa) 384

Reciprocal best hits in model fungi

Strain name Gene / Protein name

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
Hypsizygus marmoreus strain 51987-8 Hypma_RDB30827 37.4 3.841E-72 248
Agaricus bisporus var. burnettii JB137-S8 Agabi_varbur_1_130122 32.4 4.14E-47 174
Flammulina velutipes Flave_chr09AA00393 31 4.957E-47 174
Agaricus bisporus var bisporus (H97) Agabi_varbisH97_2_119934 32.4 1.941E-45 169
Schizophyllum commune H4-8 Schco3_2510445 27.5 2.991E-27 115

Expression

Name Summary Attribution Assay type
Carbon metabolism Transcriptional changes along alternative morphogenetic paths of C. cinerea Xie et al. 2020 RNA-Seq
Sample Mean cpm SD cpm Se of mean
sclerotia 44.8985 7.7806 4.4921
oidia 33.6289 0.3053 0.1763
vegetative_mycelium 41.2345 2.3665 1.3663
primordia 17.0544 1.6494 0.9523
hyphal_knot 36.5953 3.4967 2.0188
young_fruiting_body 17.522 1.1415 0.6591
Complex carbon sources 1 (long incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control - glucose 42.9185 6.1661 3.56
Wheat bran 66.741 8.9314 5.1566
Horse manure 55.5701 5.7214 3.3033
Oak leaves 40.2506 8.3201 4.8036
Hay 63.164 2.5331 1.4625
Corn stalk 54.3097 4.9854 2.8783
Pectine 53.2899 2.3504 1.357
Microcrystalline cellulose 56.6819 6.9527 4.0141
Xylose 40.3863 3.8331 2.213
Cellobiose 50.8594 2.7501 1.5878
Lignin 47.9929 4.4448 2.5662
Apple peels 50.9807 8.3587 4.8259
Coprinopsis challenged with bacteria Transcriptional response to Bacillus subtilis and Escherichia coli. Kombrink et al. 2018 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control 51.6711 1.7595 1.0158
Bsubtilis 49.5137 1.5902 0.9181
Ecoli 50.5756 1.5499 0.8948
Early development 1 Time series expression profiling of basidiospore and oidium germination Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
BS 0h 1.4802 0.0773 0.0446
BS 4h 1.7446 0.1021 0.0589
BS 8h 2.5302 0.176 0.1016
BS 12h 3.5786 0.5739 0.3313
Oidia 0 h 16.917 4.9934 2.8829
Oidia 18 h 7.4736 1.013 0.5849
Sclerotia 4.9324 2.6538 1.5321
Early development 2 Time series expression profiling of mycelial growth, light induction and fruiting body initiation. Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
DM 12h 15.5948 1.3378 0.7724
DM 36h 11.8567 0.5399 0.3117
DM 60h 10.8403 1.671 0.9648
DM 84h 10.8236 1.5808 0.9127
DM 108h 12.2512 1.332 0.7691
DM 132h 11.379 0.6358 0.3671
DM 156hAE 13.8573 2.4587 1.4195
ELI1hAE 14.8815 1.6202 0.9354
ELI2hAE 14.7171 2.7907 1.6112
LI2hAE 11.7232 2.8963 1.6722
LI6hAE 9.5258 0.7342 0.4239
LI12hAE 10.9253 1.088 0.6281
LI18hAE 11.9215 0.4836 0.2792
LI 24hAE 18.0055 1.6721 0.9654
DM 156hAM 12.1648 2.4549 1.4173
ELI1hAM 15.1497 2.7329 1.5778
ELI2hAM 11.2674 2.1642 1.2495
LI2hAM 14.468 2.4069 1.3896
LI6hAM 11.1386 1.1997 0.6926
LI12hAM 7.2958 2.7516 1.5886
LI18hAM 7.339 2.7126 1.5661
LI 24hAM 11.2192 3.8304 2.2115
LI 24hHK 12.3169 0.9801 0.5659
L/D 6h 13.0105 3.3984 1.9621
L/D 12h 13.0366 1.0902 0.6294
L/D 18h 8.7161 0.0862 0.0498
L/D 24h 11.82 1.2412 0.7166
Fruiting body development RNA-Seq analysis of fruiting body development Krizsan et al. 2019 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Vegetative mycelium 54.3441 6.1623 3.5578
Hyphal knots 30.8104 2.537 1.4647
Primordium 1 38.007 14.0866 8.1329
Primordium 2 28.9005 6.4523 3.7253
Young Fruiting body cap 29.4593 4.5036 2.6002
Younf fruiting body gill 18.4554 1.5035 0.868
Young fruiting body stipe 49.1767 15.5554 8.9809
Mature fruiting body cap_gill 19.0657 0.8277 0.4779
Mature fruiting body stipe 47.7712 10.4264 6.0197
Nitrogen sources (12h incubation) Expression profiling on diverse nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Complete medium - control 30.3474 1.2642 0.7299
NH4NO3 34.4001 1.2077 0.6973
Proline 33.1617 4.4062 2.5439
Tryptophan 36.1684 4.3704 2.5232
Isoleucin 32.698 0.7602 0.4389
Arginine 31.4617 1.4609 0.8434
Metionine 29.9961 0.348 0.2009
NaNO3 36.1196 1.1505 0.6642
Plant biomass (12h incubation) Expression profiling on diverse plant biomasses as carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 30.3474 1.2642 0.7299
Citrus peel 46.7465 0.7781 0.4492
Poplar leaves 33.361 1.094 0.6316
Typha leaves 37.4624 2.8687 1.6562
Overwintered Salix leaves 37.0916 1.3237 0.7643
Reed flowering 36.8177 2.4949 1.4404
Tigernut 30.5362 1.7955 1.0366
Energy cane 33.3705 4.7404 2.7369
Guar gum 42.0813 10.9662 6.3314
Apple peels 46.2327 2.5492 1.4718
Cellobiose 40.605 3.9797 2.2977
Corn stalk 35.1382 5.0003 2.8869
Horse manure 37.6505 2.2922 1.3234
Lignin 47.701 1.1882 0.686
Microcrystalline cellulose 35.9163 2.5192 1.4544
Oak leaves 36.4945 3.421 1.9751
Pectin esterified 50.38 5.1878 2.9952
Poplar sawdust 35.4121 1.218 0.7032
Wheat bran 38.0454 1.9281 1.1132
Chlamydomonas reinhardtii 32.0035 2.6299 1.5183
Vertatryl alcohol 38.3218 0.738 0.4261
Furfural 30.5335 2.5483 1.4713
Autoclaved mycelium 31.6958 2.5509 1.4728
Simple and complex carbon and nitrogen sources Expression profiling on diverse complex carbon and nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 49.5768 5.1237 2.9582
Ribose 49.0325 1.7529 1.012
Mannose 48.8704 0.8206 0.5803
Fructose 47.8773 5.3619 3.0957
Arabinose 46.9095 0.4529 0.2615
Xylose 49.8761 2.7799 1.605
Galacturonic acid 47.8951 6.1775 3.5666
Rhamnogalacturonan 48.6603 2.5833 1.4915
Pectin esterified 53.8368 3.4277 1.979
Polygalacturonic acid 50.2861 2.9275 1.6902
Sodium acetate 49.231 2.0983 1.2115
No nitrogen 50.0621 0.3844 0.2219
BSA 46.4859 0.9009 0.5201
Glutamine 49.6241 1.3849 0.7996
No phosphate 49.0892 4.3362 2.5035
No carbon 43.9151 2.6448 1.8702
No sulphur 45.7481 2.1475 1.2398
Simple and complex carbon sources (12h incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 30.3474 1.2642 0.7299
Amylose 34.2073 2.4346 1.4056
Fucose 32.1169 1.7182 0.992
Galactose 37.5457 1.4764 0.8524
Lactose 34.2732 3.0058 1.7354
Maltose 33.9414 5.9951 3.4613
Mannitol 36.6658 5.2694 3.0423
Rhamnose 32.3146 2.6744 1.5441
Sorbitol 38.038 1.7035 0.9835
Trehalose 35.3561 5.6847 3.282
Glycerol 34.7906 5.8298 3.3658
Glucuronic acid 32.2874 2.3242 1.3419
Arabinan 36.4389 2.5625 1.4795
Galactan 39.2275 3.7426 2.1608
Galactomannan 38.9826 5.8382 3.3707
Glucan 34.0078 3.9997 2.3093
Xylan 37.2425 4.6812 2.7027
Xyloglucan 35.388 1.4543 0.8396
Arabinogalactan 35.4238 4.7074 2.7178
Pectin 40.9076 17.0725 9.8568
Rhamnogalacturonan 38.5333 5.0582 2.9203
Polygalacturonic acid 34.3499 0.8352 0.4822
Mannan 36.0056 1.6078 0.9282
Amylopectin 41.6787 3.806 2.1974
Inulin 40.1512 5.7646 3.3282
BSA 33.6539 2.0896 1.2064
Starvation induced by water agar transfer Expression profiling on starvation induced by transfer to water agar Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Control 10.8403 1.671 0.9648
2h WAT 13.1718 2.8858 1.6661
4h WAT 11.5258 2.0871 1.205
8h WAT 10.982 2.2516 1.3
16h WAT 10.9902 2.9483 1.7022
24h WAT 10.6289 1.6215 0.9361
WAT hyphal knot -30h 14.3195 1.4908 0.8607
WAT hyphal knot -22h 13.1901 2.4818 1.4329
WAT hyphal knot -15h 12.4705 3.747 2.1633
WAT hyphal knot -7.5h 10.9221 1.319 0.7615
WAT hyphal knot 13.773 2.9294 1.6913
WAT hyphal knot +7.5h 10.4561 0.6178 0.3567
Straw time series Time series expression profiling on straw as a carbon source Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 37.7509 0.649 0.3747
Straw 3h 41.1325 2.9144 1.6827
Straw 6h 40.6381 2.5579 1.4768
Straw 12h 39.9496 4.9597 2.8635
Straw 24h 43.1698 10.2297 5.9061
Stress conditions 1 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 11.7485 1.3745 0.7936
Frost (-20C, 30min) 12.3705 1.3567 0.7833
Heat shock (47C, 2h) 6.7692 2.0395 1.1775
High CO2 11.1616 0.4005 0.2312
Drought (4% agar, 12h) 10.7464 0.8012 0.4626
Oxidative (1mM H2O2, 3h) 11.1397 0.8197 0.4732
Acidic (pH4, 3h) 9.9698 5.435 3.1379
Alkaline (pH9, 3h) 11.3443 2.856 1.6489
Osmotic (sorbitol 2h) 13.801 2.0576 1.188
CongoRed (3h) 11.8181 1.7715 1.0228
Cobalt chloride control 11.4735 2.6717 1.5425
Cobalt chloride 2mM 12.8368 1.3197 0.7619
Stress conditions 2 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 10.4331 4.4323 2.559
Cold stimulation 7.1165 2.4813 1.4326
Scratched surface 20.5617 2.1276 1.2284
Ca2+, 200mM, 24h 11.4909 0.4552 0.2628
Cu2+, 2mM, 6h 10.0912 2.6147 1.5096
Voriconazole 10.5065 3.7695 2.1763
Trichoderma interaction, early 11.8588 0.1083 0.0625
Trichoderma interaction 60h 6.9564 3.6887 2.1297
Cobalt chloride 2mM repeat 13.8497 3.4683 2.0024
Hypoxia 9.9385 1.3163 0.76
Hypoxia control 11.1756 2.2264 1.2854
Protoplastation control 10.6552 1.6985 1.201
Protoplastation 3.5h 15.6964 4.6518 3.2893
Protoplastation 1.5h 5.8509 1.9974 1.4124

General data

Systematic name -
Protein id CopciAB_372582.T0
Description other AgaK1 protein kinase

Annotation summary

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
No records

SignalP

Prediction Start End Score
No records

Transmembrane domains

Domain n Start End Length
No records

InterPro

Accession Description
IPR011009 Protein kinase-like domain superfamily

GO

Go id Term Ontology
No records

KEGG

KEGG Orthology
No records

EggNOG

COG category Description
G other AgaK1 protein kinase

CAZy

Class Family Subfamily
No records

Transcription factor

Group
No records

Conservation of CopciAB_372582 across fungi.

Arrow shows the origin of gene family containing CopciAB_372582.

Protein

Sequence id CopciAB_372582.T0
Sequence >CopciAB_372582.T0
MRLVHCGSVWETLRWTLHAWWHAYSVPTDRATWTSTQDTTIPYEEEIKITAKRWALLTPFFASRGYHLYEPSKLP
QTMPPSSLKPPADVDESYPYARRRVRDEQGLAFLDIQSCRVWAARDNAGREVIIKMVSFGEKESDELKIYRRLNT
PGARADPRNRTLPVIDYITYDGLVFVVTPRWGEPVVGLSFSTVEQLLLMTDQLLEGMVFLHQQRIAHRDVDTRNM
VMNALFEVCEGHDCDEIRDPSAVRYAYIDFEASAIFSMDTDIDKVVMKRERRFRTVHAGLEGPESNPFADDIYVL
IHVLQRWVRVVENVVPEMGVFFDEILSNYSSDLSAIAVLSKFRQIRAELTAEQLKSPTPGRLWHEGKVKRHSSSW
GFKANKSAP
Length 384

Coding

Sequence id CopciAB_372582.T0
Sequence >CopciAB_372582.T0
ATGAGGCTGGTGCATTGTGGAAGCGTATGGGAAACTCTCCGGTGGACCCTGCATGCTTGGTGGCATGCCTATTCT
GTCCCAACGGATCGGGCGACGTGGACCTCAACGCAGGATACGACCATACCCTACGAAGAAGAAATCAAGATAACT
GCGAAGCGCTGGGCTCTGTTGACGCCATTCTTTGCATCCCGAGGTTACCACCTCTATGAACCGAGCAAGCTACCT
CAGACCATGCCTCCGTCCTCGCTCAAGCCTCCGGCTGACGTCGATGAAAGCTACCCCTACGCACGACGTCGTGTG
AGGGACGAACAAGGTCTCGCGTTCCTTGATATTCAGAGTTGTAGGGTGTGGGCCGCGCGCGACAATGCCGGAAGA
GAGGTGATCATCAAGATGGTCTCCTTTGGGGAGAAAGAATCAGACGAGCTGAAGATATACAGGAGGTTGAATACA
CCTGGAGCTAGGGCAGATCCTCGCAACAGGACCCTACCTGTCATTGACTATATCACTTACGACGGATTGGTCTTC
GTTGTCACGCCTCGCTGGGGGGAGCCAGTCGTGGGACTGAGTTTCTCCACGGTAGAGCAGCTTCTTCTCATGACC
GATCAATTGCTGGAGGGCATGGTCTTTCTGCACCAACAGAGAATAGCTCACCGCGATGTTGACACACGGAACATG
GTGATGAACGCATTATTTGAGGTTTGCGAGGGACACGACTGCGATGAAATCCGTGACCCCTCTGCTGTACGTTAC
GCTTACATTGACTTTGAAGCCTCGGCAATCTTCTCCATGGATACAGACATCGACAAGGTTGTAATGAAGCGCGAG
AGGAGGTTTAGGACAGTACATGCTGGCTTGGAAGGCCCCGAGTCGAATCCTTTTGCAGACGACATTTACGTTCTG
ATACATGTCTTACAGCGATGGGTCCGGGTTGTGGAAAATGTCGTCCCCGAGATGGGAGTGTTCTTCGACGAGATC
CTCTCGAATTACTCGAGCGATCTCTCTGCTATCGCTGTTCTGAGCAAATTTCGCCAGATCCGGGCAGAACTCACG
GCAGAGCAGTTGAAGAGCCCCACCCCCGGTCGCCTTTGGCACGAGGGAAAGGTGAAGAGACATTCAAGCTCCTGG
GGATTTAAAGCAAACAAGTCTGCACCATAG
Length 1155

Transcript

Sequence id CopciAB_372582.T0
Sequence >CopciAB_372582.T0
ATGTTCTCGTCACTCCACATATCTCAAGTCTCTCCAAAAACGTATCACGCTCACGTATCATGAGGCTGGTGCATT
GTGGAAGCGTATGGGAAACTCTCCGGTGGACCCTGCATGCTTGGTGGCATGCCTATTCTGTCCCAACGGATCGGG
CGACGTGGACCTCAACGCAGGATACGACCATACCCTACGAAGAAGAAATCAAGATAACTGCGAAGCGCTGGGCTC
TGTTGACGCCATTCTTTGCATCCCGAGGTTACCACCTCTATGAACCGAGCAAGCTACCTCAGACCATGCCTCCGT
CCTCGCTCAAGCCTCCGGCTGACGTCGATGAAAGCTACCCCTACGCACGACGTCGTGTGAGGGACGAACAAGGTC
TCGCGTTCCTTGATATTCAGAGTTGTAGGGTGTGGGCCGCGCGCGACAATGCCGGAAGAGAGGTGATCATCAAGA
TGGTCTCCTTTGGGGAGAAAGAATCAGACGAGCTGAAGATATACAGGAGGTTGAATACACCTGGAGCTAGGGCAG
ATCCTCGCAACAGGACCCTACCTGTCATTGACTATATCACTTACGACGGATTGGTCTTCGTTGTCACGCCTCGCT
GGGGGGAGCCAGTCGTGGGACTGAGTTTCTCCACGGTAGAGCAGCTTCTTCTCATGACCGATCAATTGCTGGAGG
GCATGGTCTTTCTGCACCAACAGAGAATAGCTCACCGCGATGTTGACACACGGAACATGGTGATGAACGCATTAT
TTGAGGTTTGCGAGGGACACGACTGCGATGAAATCCGTGACCCCTCTGCTGTACGTTACGCTTACATTGACTTTG
AAGCCTCGGCAATCTTCTCCATGGATACAGACATCGACAAGGTTGTAATGAAGCGCGAGAGGAGGTTTAGGACAG
TACATGCTGGCTTGGAAGGCCCCGAGTCGAATCCTTTTGCAGACGACATTTACGTTCTGATACATGTCTTACAGC
GATGGGTCCGGGTTGTGGAAAATGTCGTCCCCGAGATGGGAGTGTTCTTCGACGAGATCCTCTCGAATTACTCGA
GCGATCTCTCTGCTATCGCTGTTCTGAGCAAATTTCGCCAGATCCGGGCAGAACTCACGGCAGAGCAGTTGAAGA
GCCCCACCCCCGGTCGCCTTTGGCACGAGGGAAAGGTGAAGAGACATTCAAGCTCCTGGGGATTTAAAGCAAACA
AGTCTGCACCATAGTCTCGAACAGTTGGAATTTCACAGATCTAGACAGGAGCGTCGAGCACCGATTCCACATGGG
ATGGCTGTAAAGCTAGCTACCGCCAGAATGATTGAAGTACAAATTGTCACGG
Length 1327

Gene

Sequence id CopciAB_372582.T0
Sequence >CopciAB_372582.T0
ATGTTCTCGTCACTCCACATATCTCAAGTCTCTCCAAAAACGTATCACGCTCACGTATCATGAGGCTGGTGCATT
GTGGAAGCGTATGGGAAACTCTCCGGTGGACCCTGCATGCTTGGTGGCATGCCTATTCTGTCCCAACGGATCGGG
CGACGTGGACCTCAACGCAGGATACGACCATACCCTACGAAGAAGAAATCAAGATAACTGCGAAGCGCTGGGCTC
TGTTGACGCCATTCTTTGCATCCCGAGGTTACCACCTCTATGAACCGAGCAAGCTACCTCAGACCATGCCTCCGT
CCTCGCTCAAGCCTCCGGCTGACGTCGATGAAAGCTACCCCTACGCACGACGTCGTGTGAGGGACGAACAAGGTC
TCGCGTTCCTTGATATTCAGGTGCGCTAGGAAGTACTCCATCTACAAAATTCTCTCAACCTGGCTCTTGATTTGT
AGAGTTGTAGGGTGTGGGCCGCGCGCGACAATGCCGGAAGAGAGGTGATCATCAAGTCTGTCCCTATGAATTGGA
TACGATGTCAACTTTCTGATTTCAATCCGCCTGTGACTTTCAGGATGGTCTCCTTTGGGGAGAAAGAATCAGACG
AGCTGAAGATATACAGGAGGTTGAATACACCTGGAGCTAGGGCAGATCCTCGCAACAGGACCCTACCTGTCATTG
ACTATATCACTTACGACGGATTGGTCTTCGTTGTCACGCCTCGGTTGGTGCTTGATTATGCCAGCTCTCTGATGT
ACTCATACCTTCCATCGCCAGCTGGGGGGAGCCAGTCGTGGGACTGAGTTTCTCCACGGTAGAGCAGCTTCTTCT
CATGACCGATCAATTGCTGGAGGTATGTACCCGCCCTACTACCGGTCCGTAGCCAGGTCATTAATCAAAGGTATA
GGGCATGGTCTTTCTGCACCAACAGAGAATAGCTCACCGCGATGTTGACACACGGAACATGGTGATGAACGCATT
ATTTGAGGTTTGCGAGGGACACGACTGCGATGAAATCCGTGACCCCTCTGCTGTACGTTACGCTTACATTGACTT
TGAAGCCTCGGCAATCTTCTCCATGGATACAGACATCGACAAGGTTGTAATGAAGCGCGAGAGGAGGTTTAGGAC
AGTACATGCTGGCTTGGAAGGCCCCGAGTCGAATCCTTTTGCAGACGACATTTACGTTCTGATACATGTCTTACA
GCGATGGGTCCGGGTGCGTCATTTCTGAGCAACCACAATGGAGGATGCTCACAAAATGACTTTCCGTCAGGTTGT
GGAAAATGTCGTCCCCGAGATGGGAGTGTTCTTCGACGAGATCCTCTCGAATTACTCGAGCGATCTCTCTGCTAT
CGCTGTTCTGAGCAAATTTCGCCAGATCCGGGCAGAACTCACGGCAGAGCAGTTGAAGAGCCCCACCCCCGGTCG
CCTTTGGCACGAGGGTACCACCTCTACATTTTCTTGCTTCAATCAGCGCTGACCTTCTGGCTTTGCTTTTAGGAA
AGGTGAAGAGACATTCAAGCTCCTGGGGATTTAAAGCAAACAAGTCTGCACCATAGTCTCGAACAGTTGGAATTT
CACAGATCTAGACAGGAGCGTCGAGCACCGATTCCACATGGGATGGCTGTAAAGCTAGCTACCGCCAGAATGATT
GAAGTACAAATTGTCACGG
Length 1669