CopciAB_372592
Coprinopsis cinerea A43mutB43mut pab1-1 #326

General data

Systematic name CopciAB_372592 Strain Coprinopsis cinerea Okayama 7
Standard name - Synonyms 372592
Uniprot id Functional description other AgaK1 protein kinase
Location scaffold_11:846066..847824 Strand -
Gene length (nt) 1759 Transcript length (nt) 1428
CDS length (nt) 1116 Protein length (aa) 371

Reciprocal best hits in model fungi

Strain name Gene / Protein name

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
0

Expression

Name Summary Attribution Assay type
Carbon metabolism Transcriptional changes along alternative morphogenetic paths of C. cinerea Xie et al. 2020 RNA-Seq
Sample Mean cpm SD cpm Se of mean
sclerotia 61.4121 7.6037 4.39
oidia 101.8245 4.9818 2.8762
vegetative_mycelium 118.3493 4.5099 2.6038
primordia 46.2977 4.1304 2.3847
hyphal_knot 94.0255 11.7326 6.7738
young_fruiting_body 55.5991 6.2019 3.5807
Complex carbon sources 1 (long incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control - glucose 158.7204 15.8382 9.1442
Wheat bran 196.5409 35.2724 20.3645
Horse manure 88.7585 27.289 15.7553
Oak leaves 118.7285 23.0328 13.298
Hay 125.2725 11.089 6.4022
Corn stalk 111.4894 7.4812 4.3193
Pectine 106.1296 6.8338 3.9455
Microcrystalline cellulose 133.3148 14.1836 8.1889
Xylose 143.3154 21.5222 12.4259
Cellobiose 183.8234 30.6901 17.7189
Lignin 99.0031 22.8286 13.1801
Apple peels 126.6847 18.3744 10.6085
Coprinopsis challenged with bacteria Transcriptional response to Bacillus subtilis and Escherichia coli. Kombrink et al. 2018 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control 126.2253 4.9788 2.8745
Bsubtilis 115.1939 2.5627 1.4796
Ecoli 156.0356 8.3183 4.8026
Early development 1 Time series expression profiling of basidiospore and oidium germination Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
BS 0h 4.09 0.8022 0.4632
BS 4h 1.4847 0.1232 0.0711
BS 8h 1.7619 0.5868 0.3388
BS 12h 0.9599 0.4823 0.2785
Oidia 0 h 26.8315 6.5433 3.7778
Oidia 18 h 7.762 2.3759 1.3717
Sclerotia 16.1163 3.1152 1.7985
Early development 2 Time series expression profiling of mycelial growth, light induction and fruiting body initiation. Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
DM 12h 33.7189 1.8648 1.0766
DM 36h 36.5218 4.1213 2.3794
DM 60h 41.6562 3.1316 1.8081
DM 84h 37.4715 2.1515 1.2422
DM 108h 41.5635 5.1185 2.9552
DM 132h 41.3554 8.6451 4.9912
DM 156hAE 31.6469 13.1164 7.5728
ELI1hAE 35.2036 3.2215 1.8599
ELI2hAE 39.1784 6.9572 4.0167
LI2hAE 34.664 3.26 1.8821
LI6hAE 24.0647 2.1909 1.2649
LI12hAE 35.4232 2.6987 1.5581
LI18hAE 34.3755 3.0062 1.7357
LI 24hAE 31.0903 6.2181 3.59
DM 156hAM 36.3956 4.5862 2.6478
ELI1hAM 41.9535 8.4996 4.9073
ELI2hAM 39.9275 5.8876 3.3992
LI2hAM 41.7381 6.8607 3.961
LI6hAM 28.1155 3.0999 1.7897
LI12hAM 31.433 3.6722 2.1201
LI18hAM 34.6224 4.0474 2.3368
LI 24hAM 22.6099 1.0655 0.6152
LI 24hHK 32.0876 2.379 1.3735
L/D 6h 39.0758 6.8238 3.9397
L/D 12h 42.616 4.385 2.5317
L/D 18h 33.8838 2.9259 1.6893
L/D 24h 37.0462 3.6577 2.1118
Fruiting body development RNA-Seq analysis of fruiting body development Krizsan et al. 2019 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Vegetative mycelium 70.6375 2.4104 1.3916
Hyphal knots 59.2284 6.0042 3.4665
Primordium 1 69.6246 14.0914 8.1357
Primordium 2 49.3885 4.5787 2.6435
Young Fruiting body cap 33.8986 2.4621 1.4215
Younf fruiting body gill 30.2846 5.3053 3.063
Young fruiting body stipe 47.2805 14.666 8.4674
Mature fruiting body cap_gill 16.2937 2.9043 1.6768
Mature fruiting body stipe 63.9266 10.0313 5.7916
Nitrogen sources (12h incubation) Expression profiling on diverse nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Complete medium - control 106.9772 29.3611 16.9516
NH4NO3 82.0948 9.2479 5.3393
Proline 82.9063 17.5202 10.1153
Tryptophan 70.2702 27.032 15.6069
Isoleucin 94.3238 6.4486 3.7231
Arginine 99.7653 12.8861 7.4398
Metionine 81.1054 5.978 3.4514
NaNO3 108.3499 8.447 4.8769
Plant biomass (12h incubation) Expression profiling on diverse plant biomasses as carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 106.9772 29.3611 16.9516
Citrus peel 206.753 24.2697 14.0121
Poplar leaves 79.8535 14.8454 8.571
Typha leaves 123.083 45.0221 25.9935
Overwintered Salix leaves 108.3524 25.9347 14.9734
Reed flowering 177.8738 88.4089 51.0429
Tigernut 147.514 19.1395 11.0502
Energy cane 107.833 17.1611 9.908
Guar gum 100.0665 74.2121 42.8464
Apple peels 58.9529 12.2615 7.0792
Cellobiose 79.4723 3.9085 2.2566
Corn stalk 65.2406 3.6137 2.0863
Horse manure 63.9769 15.9274 9.1957
Lignin 124.9589 38.974 22.5017
Microcrystalline cellulose 73.063 2.3781 1.373
Oak leaves 71.7373 6.7925 3.9217
Pectin esterified 86.0262 26.8908 15.5254
Poplar sawdust 67.4903 15.4661 8.9293
Wheat bran 84.3172 25.0329 14.4528
Chlamydomonas reinhardtii 94.8787 8.6554 4.9972
Vertatryl alcohol 121.5232 8.4734 4.8921
Furfural 107.1779 24.4196 14.0987
Autoclaved mycelium 91.1807 5.4328 3.1366
Simple and complex carbon and nitrogen sources Expression profiling on diverse complex carbon and nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 110.2857 6.5224 3.7657
Ribose 85.8738 3.5101 2.0265
Mannose 91.7027 2.8957 2.0476
Fructose 99.7247 9.7632 5.6368
Arabinose 95.3606 13.7939 7.9639
Xylose 90.4625 9.2525 5.3419
Galacturonic acid 92.265 18.9945 10.9665
Rhamnogalacturonan 102.6629 11.5683 6.679
Pectin esterified 92.7575 3.2787 1.8929
Polygalacturonic acid 100.237 1.1709 0.676
Sodium acetate 79.967 8.8523 5.1109
No nitrogen 102.9008 8.9394 5.1612
BSA 100.9587 8.7104 5.029
Glutamine 98.1017 10.9739 6.3358
No phosphate 101.9017 7.5911 4.3827
No carbon 87.1766 1.1063 0.7823
No sulphur 106.1103 7.9016 4.562
Simple and complex carbon sources (12h incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 106.9772 29.3611 16.9516
Amylose 67.3901 6.8701 3.9665
Fucose 80.0836 9.1848 5.3029
Galactose 70.4119 2.0526 1.1851
Lactose 87.3171 17.9907 10.3869
Maltose 81.6165 6.2866 3.6295
Mannitol 91.6813 11.4277 6.5978
Rhamnose 105.1969 18.5159 10.6902
Sorbitol 75.4766 6.0181 3.4746
Trehalose 102.5055 39.5414 22.8293
Glycerol 106.6292 16.4097 9.4742
Glucuronic acid 62.5018 3.1083 1.7946
Arabinan 101.2084 31.3503 18.1001
Galactan 84.0935 7.0185 4.0521
Galactomannan 118.0585 17.3162 9.9975
Glucan 105.7864 5.9406 3.4298
Xylan 75.3276 16.3827 9.4585
Xyloglucan 58.9645 5.9419 3.4306
Arabinogalactan 62.9343 2.5434 1.4685
Pectin 91.9181 39.0939 22.5709
Rhamnogalacturonan 56.8286 10.0292 5.7903
Polygalacturonic acid 109.3051 34.7443 20.0596
Mannan 80.041 5.4919 3.1708
Amylopectin 112.9076 48.712 28.1239
Inulin 65.4362 1.7564 1.014
BSA 129.0273 4.2694 2.4649
Starvation induced by water agar transfer Expression profiling on starvation induced by transfer to water agar Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Control 41.6562 3.1316 1.8081
2h WAT 32.9611 3.6687 2.1181
4h WAT 28.929 6.2301 3.597
8h WAT 30.71 6.8504 3.9551
16h WAT 27.9459 2.4235 1.3992
24h WAT 24.4122 7.0254 4.0561
WAT hyphal knot -30h 34.1496 6.8183 3.9365
WAT hyphal knot -22h 27.0322 1.659 0.9578
WAT hyphal knot -15h 29.1842 0.9401 0.5428
WAT hyphal knot -7.5h 36.2662 2.2171 1.28
WAT hyphal knot 31.2742 5.2771 3.0467
WAT hyphal knot +7.5h 22.2002 3.7042 2.1386
Straw time series Time series expression profiling on straw as a carbon source Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 89.5632 20.6817 11.9406
Straw 3h 96.5999 12.1439 7.0113
Straw 6h 88.8958 18.3217 10.5781
Straw 12h 82.3626 14.3301 8.2735
Straw 24h 109.2858 42.0817 24.2959
Stress conditions 1 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 34.6479 6.6737 3.8531
Frost (-20C, 30min) 27.4978 1.8326 1.0581
Heat shock (47C, 2h) 26.5522 1.5218 0.8786
High CO2 30.9028 1.6284 0.9401
Drought (4% agar, 12h) 25.1841 1.3941 0.8049
Oxidative (1mM H2O2, 3h) 33.4117 3.9905 2.3039
Acidic (pH4, 3h) 39.1506 9.8493 5.6865
Alkaline (pH9, 3h) 32.4504 0.7757 0.4478
Osmotic (sorbitol 2h) 25.3908 4.9711 2.8701
CongoRed (3h) 26.3438 1.011 0.5837
Cobalt chloride control 25.4621 3.8284 2.2103
Cobalt chloride 2mM 28.9942 7.3053 4.2177
Stress conditions 2 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 42.4531 11.4983 6.6385
Cold stimulation 33.0234 9.6831 5.5906
Scratched surface 41.216 8.1735 4.719
Ca2+, 200mM, 24h 48.0888 7.2291 4.1737
Cu2+, 2mM, 6h 25.4767 0.7697 0.4444
Voriconazole 40.2411 7.236 4.1777
Trichoderma interaction, early 30.7027 5.3408 3.0835
Trichoderma interaction 60h 40.4812 17.6671 10.2001
Cobalt chloride 2mM repeat 43.407 3.1979 1.8463
Hypoxia 33.0355 6.4274 3.7109
Hypoxia control 31.0236 10.427 6.02
Protoplastation control 16.8151 0.5744 0.4062
Protoplastation 3.5h 16.2934 4.6736 3.3048
Protoplastation 1.5h 22.0889 8.4319 5.9623

General data

Systematic name -
Protein id CopciAB_372592.T0
Description other AgaK1 protein kinase

Annotation summary

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
No records

SignalP

Prediction Start End Score
No records

Transmembrane domains

Domain n Start End Length
No records

InterPro

Accession Description
IPR011009 Protein kinase-like domain superfamily

GO

Go id Term Ontology
No records

KEGG

KEGG Orthology
No records

EggNOG

COG category Description
G other AgaK1 protein kinase

CAZy

Class Family Subfamily
No records

Transcription factor

Group
No records

Conservation of CopciAB_372592 across fungi.

Arrow shows the origin of gene family containing CopciAB_372592.

Protein

Sequence id CopciAB_372592.T0
Sequence >CopciAB_372592.T0
MMKLVQCDTLWATLRWSLHAWWHGYSVPTELSSWARYEEDYEVLKAAGERWALLRPFFASWGYHLYEYERLPLTY
PPKSLKCPDIVDESYPYARCRFTKDEHYVFTYVHTGRIWAARDNFGRDVIIKLVSSRNEEQEELKVWKRLSAPEV
REDPRSNRTLRVLDFITYDGLVFVVTPRWGMPFVGLSFPSVEHIFDMLEQFYDGLAFLHDNRIAHRDIDPGNMVM
NALFDYFDETRDSVEIRDPSRVLYAHIDFEASALFAMDTDIDNVTMERASRLSTLWSGLAEGQRSNPFRDDVYVL
TWVLQDWSRHIESIVPEIGSFYDGILKDYSRTPRAEAALHQLREIRSKLTAEQLRQEPPGYMWSKGKVLKD
Length 371

Coding

Sequence id CopciAB_372592.T0
Sequence >CopciAB_372592.T0
ATGATGAAGCTGGTACAGTGTGACACATTGTGGGCAACCCTGCGATGGTCTCTACATGCCTGGTGGCACGGCTAT
TCAGTCCCGACGGAACTGTCGAGTTGGGCCCGGTATGAAGAGGATTACGAAGTTCTGAAGGCGGCAGGGGAACGG
TGGGCCCTACTCAGGCCTTTCTTCGCATCGTGGGGATACCACCTCTACGAATATGAGCGCCTCCCGCTCACGTAC
CCCCCGAAGTCCCTCAAATGTCCCGACATTGTGGATGAGTCCTATCCTTATGCCAGGTGTCGTTTCACCAAGGAT
GAGCATTATGTGTTCACCTATGTCCATACTGGTCGGATATGGGCCGCGCGAGACAACTTTGGCAGAGACGTTATC
ATAAAGCTAGTTTCGAGTCGGAATGAAGAACAGGAAGAGCTGAAAGTTTGGAAAAGACTGAGCGCTCCTGAAGTA
AGGGAAGATCCCCGTAGTAATCGAACGCTCCGAGTGCTAGACTTCATCACGTACGACGGACTAGTGTTCGTGGTA
ACACCTCGATGGGGAATGCCTTTTGTAGGACTGTCGTTCCCGTCAGTTGAGCATATCTTCGACATGCTGGAACAA
TTTTACGACGGCCTCGCATTTCTTCACGACAACAGGATTGCCCATCGCGACATTGATCCCGGGAACATGGTCATG
AACGCATTATTCGATTACTTTGATGAGACTCGAGATTCTGTCGAGATTCGGGACCCCTCTCGTGTCCTTTACGCC
CATATCGACTTCGAGGCATCTGCACTCTTTGCTATGGACACGGACATTGACAATGTAACAATGGAACGCGCCAGT
CGCCTTTCGACGTTATGGTCGGGCCTGGCCGAAGGACAAAGATCAAATCCTTTCCGGGACGACGTCTATGTTTTG
ACCTGGGTTTTACAGGACTGGTCTAGGCACATTGAGTCCATTGTTCCTGAGATTGGGTCTTTTTATGACGGTATC
TTGAAGGATTACTCCCGTACGCCGCGCGCTGAGGCAGCTCTCCATCAATTGAGAGAAATTCGCTCGAAGCTCACT
GCAGAGCAGCTGCGCCAGGAACCGCCAGGCTATATGTGGAGCAAAGGGAAAGTTCTCAAGGACTGA
Length 1116

Transcript

Sequence id CopciAB_372592.T0
Sequence >CopciAB_372592.T0
TTTCCTCTTTTGAGCTGTTTCAATTCGTGTCCCTTCAACCGTCAAGGCCTGCACAGAAATACTTGCGCGGAACAC
AGTGCTTCTCATGGAATGATGAAGCTGGTACAGTGTGACACATTGTGGGCAACCCTGCGATGGTCTCTACATGCC
TGGTGGCACGGCTATTCAGTCCCGACGGAACTGTCGAGTTGGGCCCGGTATGAAGAGGATTACGAAGTTCTGAAG
GCGGCAGGGGAACGGTGGGCCCTACTCAGGCCTTTCTTCGCATCGTGGGGATACCACCTCTACGAATATGAGCGC
CTCCCGCTCACGTACCCCCCGAAGTCCCTCAAATGTCCCGACATTGTGGATGAGTCCTATCCTTATGCCAGGTGT
CGTTTCACCAAGGATGAGCATTATGTGTTCACCTATGTCCATACTGGTCGGATATGGGCCGCGCGAGACAACTTT
GGCAGAGACGTTATCATAAAGCTAGTTTCGAGTCGGAATGAAGAACAGGAAGAGCTGAAAGTTTGGAAAAGACTG
AGCGCTCCTGAAGTAAGGGAAGATCCCCGTAGTAATCGAACGCTCCGAGTGCTAGACTTCATCACGTACGACGGA
CTAGTGTTCGTGGTAACACCTCGATGGGGAATGCCTTTTGTAGGACTGTCGTTCCCGTCAGTTGAGCATATCTTC
GACATGCTGGAACAATTTTACGACGGCCTCGCATTTCTTCACGACAACAGGATTGCCCATCGCGACATTGATCCC
GGGAACATGGTCATGAACGCATTATTCGATTACTTTGATGAGACTCGAGATTCTGTCGAGATTCGGGACCCCTCT
CGTGTCCTTTACGCCCATATCGACTTCGAGGCATCTGCACTCTTTGCTATGGACACGGACATTGACAATGTAACA
ATGGAACGCGCCAGTCGCCTTTCGACGTTATGGTCGGGCCTGGCCGAAGGACAAAGATCAAATCCTTTCCGGGAC
GACGTCTATGTTTTGACCTGGGTTTTACAGGACTGGTCTAGGCACATTGAGTCCATTGTTCCTGAGATTGGGTCT
TTTTATGACGGTATCTTGAAGGATTACTCCCGTACGCCGCGCGCTGAGGCAGCTCTCCATCAATTGAGAGAAATT
CGCTCGAAGCTCACTGCAGAGCAGCTGCGCCAGGAACCGCCAGGCTATATGTGGAGCAAAGGGAAAGTTCTCAAG
GACTGACACTCGAGCGCTAGGTCGACATCGAGGGCCCGACGTCACTCCAGCCACAGTCTGCAGAGGAAGTATATA
TCAGACTCCTGCCAGATTTTACACTTCTCAGGCGTGTTTATTACACTCTTGGAATGACTTGGTCCCCGTCAGGAA
ATTTAGGTTACCCACATTTGCCTCAATGTTTGTCTCATTCAATACTCCGACTGCTTAACCTGGACGTTCTCCGTC
TCA
Length 1428

Gene

Sequence id CopciAB_372592.T0
Sequence >CopciAB_372592.T0
TTTCCTCTTTTGAGCTGTTTCAATTCGTGTCCCTTCAACCGTCAAGGCCTGCACAGAAATACTTGCGCGGAACAC
AGTGCTTCTCATGGAATGATGAAGCTGGTACAGTGTGACACATTGTGGGCAACCCTGCGATGGTCTCTACATGCC
TGGTGGCACGGCTATTCAGTCCCGACGGAACTGTCGAGTTGGGCCCGGTATGAAGAGGATTACGAAGTTCTGAAG
GCGGCAGGGGAACGGTGGGCCCTACTCAGGCCTTTCTTCGCATCGTGGGGATACCACCTCTACGAATATGAGCGC
CTCCCGCTCACGTACCCCCCGAAGTCCCTCAAATGTCCCGACATTGTGGATGAGTCCTATCCTTATGCCAGGTGT
CGTTTCACCAAGGATGAGCATTATGTGTTCACCTATGTCCATGTGAGTACTGGATCGATTTTACTGCCTGTTCGT
CACTCACTGTGACTCGCATCGTTCCTAGACTGGTCGGATATGGGCCGCGCGAGACAACTTTGGCAGAGACGTTAT
CATAAAGTTGGCTCCTTTCTTACATTCGGTGCTCTAGTTTTAACGACGAATACTTTACAGGCTAGTTTCGAGTCG
GAATGAAGAACAGGAAGAGCTGAAAGTTTGGAAAAGACTGAGCGCTCCTGAAGTAAGGGAAGATCCCCGTAGTAA
TCGAACGCTCCGAGTGCTAGACTTCATCACGTACGACGGACTAGTGTTCGTGGTAACACCTCGGTGGGTACGCCC
TCATTCAAGCGCAAGTCTGGCCTCATGATCTGTTTTGAATAGATGGGGAATGCCTTTTGTAGGACTGTCGTTCCC
GTCAGTTGAGCATATCTTCGACATGCTGGAACAATTTTACGACGTAGGTCATTTGAGTGCTGGGTTCAGGTACGA
AGCTGTGACTTAACGCTTGGGCACAGGGCCTCGCATTTCTTCACGACAACAGGATTGCCCATCGCGACATTGATC
CCGGGAACATGGTCATGAACGCATTATTCGATTACTTTGATGAGACTCGAGATTCTGTCGAGATTCGGGACCCCT
CTCGTGTCCTTTACGCCCATATCGACTTCGAGGCATCTGCACTCTTTGCTATGGACACGGACATTGACAATGTAA
CAATGGAACGCGCCAGTCGCCTTTCGACGTTATGGTCGGGCCTGGCCGAAGGACAAAGATCAAATCCTTTCCGGG
ACGACGTCTATGTTTTGACCTGGGTTTTACAGGACTGGTCTAGGGTTCGTATCTCTGGCATTTCTCACCTTCTTG
TGCAGCTTACCCGTTTCTAGCACATTGAGTCCATTGTTCCTGAGATTGGGTCTTTTTATGACGGTATCTTGAAGG
ATTACTCCCGTACGCCGCGCGCTGAGGCAGCTCTCCATCAATTGAGAGAAATTCGCTCGAAGCTCACTGCAGAGC
AGCTGCGCCAGGAACCGCCAGGCTATATGTGGAGCAAAGGTGAGTTCCTAGGATCTTGTTCTAATTGTAATCTCA
GACGCTTCTTCGTTCAGGGAAAGTTCTCAAGGACTGACACTCGAGCGCTAGGTCGACATCGAGGGCCCGACGTCA
CTCCAGCCACAGTCTGCAGAGGAAGTATATATCAGACTCCTGCCAGATTTTACACTTCTCAGGCGTGTTTATTAC
ACTCTTGGAATGACTTGGTCCCCGTCAGGAAATTTAGGTTACCCACATTTGCCTCAATGTTTGTCTCATTCAATA
CTCCGACTGCTTAACCTGGACGTTCTCCGTCTCA
Length 1759