Systematic name | CopciAB_373470 | Strain | Coprinopsis cinerea Okayama 7 |
---|---|---|---|
Standard name | CDC28 | Synonyms | 373470 |
Uniprot id | Functional description | Belongs to the protein kinase superfamily | |
Location | scaffold_3:3276385..3278621 | Strand | + |
Gene length (nt) | 2237 | Transcript length (nt) | 1362 |
CDS length (nt) | 897 | Protein length (aa) | 298 |
Strain name | Gene / Protein name |
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Histoplasma mississippiense | CDC2 |
Candida albicans | CDC28 |
Saccharomyces cerevisiae | YBR160W_CDC28 |
Schizosaccharomyces pombe | cdc2 |
Neurospora crassa | cdc28 |
Strain name | Gene / Protein name | Pident | E-value | Bits |
---|---|---|---|---|
Pleurotus eryngii ATCC 90797 | Pleery1_1439404 | 87.3 | 4.951E-175 | 541 |
Agrocybe aegerita | Agrae_CAA7266738 | 86.6 | 1.141E-174 | 540 |
Pleurotus ostreatus PC15 | PleosPC15_2_185666 | 86.9 | 2.28E-173 | 536 |
Schizophyllum commune H4-8 | Schco3_2629921 | 86.9 | 3.312E-172 | 533 |
Lentinula edodes NBRC 111202 | Lenedo1_1136111 | 84.2 | 3.201E-171 | 530 |
Lentinula edodes W1-26 v1.0 | Lentinedodes1_1684 | 84.2 | 3.176E-171 | 530 |
Hypsizygus marmoreus strain 51987-8 | Hypma_RDB21937 | 89.6 | 8.367E-171 | 529 |
Pleurotus ostreatus PC9 | PleosPC9_1_114067 | 86.8 | 7.869E-168 | 520 |
Ganoderma sp. 10597 SS1 v1.0 | Gansp1_110915 | 83.1 | 2.301E-165 | 513 |
Agaricus bisporus var bisporus (H97) | Agabi_varbisH97_2_195370 | 80.6 | 2.23E-163 | 507 |
Agaricus bisporus var. burnettii JB137-S8 | Agabi_varbur_1_114985 | 80.6 | 2.324E-163 | 507 |
Auricularia subglabra | Aurde3_1_1244331 | 77.7 | 2.263E-154 | 482 |
Flammulina velutipes | Flave_chr07AA00685 | 74.8 | 4.532E-149 | 466 |
Lentinula edodes B17 | Lened_B_1_1_7478 | 71.1 | 3.631E-141 | 443 |
Name | Summary | Attribution | Assay type | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Carbon metabolism | Transcriptional changes along alternative morphogenetic paths of C. cinerea | Xie et al. 2020 | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Complex carbon sources 1 (long incubation) | Expression profiling on diverse complex carbon sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Coprinopsis challenged with bacteria | Transcriptional response to Bacillus subtilis and Escherichia coli. | Kombrink et al. 2018 | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Early development 1 | Time series expression profiling of basidiospore and oidium germination | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Early development 2 | Time series expression profiling of mycelial growth, light induction and fruiting body initiation. | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Fruiting body development | RNA-Seq analysis of fruiting body development | Krizsan et al. 2019 | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Nitrogen sources (12h incubation) | Expression profiling on diverse nitrogen sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Plant biomass (12h incubation) | Expression profiling on diverse plant biomasses as carbon sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Simple and complex carbon and nitrogen sources | Expression profiling on diverse complex carbon and nitrogen sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Simple and complex carbon sources (12h incubation) | Expression profiling on diverse complex carbon sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Starvation induced by water agar transfer | Expression profiling on starvation induced by transfer to water agar | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Straw time series | Time series expression profiling on straw as a carbon source | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Stress conditions 1 | Expression profiling under various stress conditions | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Stress conditions 2 | Expression profiling under various stress conditions | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Systematic name | CDC28 |
---|---|
Protein id | CopciAB_373470.T0 |
Description | Belongs to the protein kinase superfamily |
Analysis | Signature accession | Signature description | InterPro Accession | Start | End |
---|---|---|---|---|---|
CDD | cd07835 | STKc_CDK1_CdkB_like | - | 4 | 289 |
Pfam | PF00069 | Protein kinase domain | IPR000719 | 4 | 289 |
Prediction | Start | End | Score |
---|---|---|---|
No records |
Domain n | Start | End | Length |
---|---|---|---|
No records |
Accession | Description |
---|---|
IPR000719 | Protein kinase domain |
IPR017441 | Protein kinase, ATP binding site |
IPR011009 | Protein kinase-like domain superfamily |
IPR008271 | Serine/threonine-protein kinase, active site |
Go id | Term | Ontology |
---|---|---|
GO:0004672 | protein kinase activity | MF |
GO:0005524 | ATP binding | MF |
GO:0006468 | protein phosphorylation | BP |
KEGG Orthology |
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K04563 |
COG category | Description |
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T | Belongs to the protein kinase superfamily |
Class | Family | Subfamily |
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No records |
Group |
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No records |
Arrow shows the origin of gene family containing CopciAB_373470.
Sequence id | CopciAB_373470.T0 |
---|---|
Sequence |
>CopciAB_373470.T0 MDRYAKIEKVGEGTYGVVYKARDTSTNTIVALKKIRLEAEDEGVPSTAIREISLLKELKDDNIVKLLDIVHADQK LYLVFEFLDVDLKRFIETGNQNRSPITPALVKKFTHQLNSGLLYCHSHRILHRDLKPQNLLIDKHNNLKLADFGL ARAFGIPMRTYTHEVVTLWYRAPEVLLGSRHYSTAIDMWSVGCIFAEMAMQGAPLFPGDSEIDQIFKIFRLLGTP NEDIWPGVSTLPDYKPTFPNWSRQDLAKAVPTLDEAGIDMLKRTLTYDSAKRLSAKRALVHPYFADYNNNYKA |
Length | 298 |
Sequence id | CopciAB_373470.T0 |
---|---|
Sequence |
>CopciAB_373470.T0 ATGGATCGATACGCAAAAATCGAAAAAGTCGGCGAAGGTACCTATGGCGTTGTTTATAAGGCAAGAGATACAAGT ACGAATACCATCGTCGCCCTGAAGAAGATCAGGCTCGAGGCTGAAGACGAGGGCGTTCCCAGTACTGCCATTCGT GAGATCAGCTTGCTCAAAGAGTTGAAGGATGACAACATCGTCAAGCTGCTGGATATCGTTCATGCGGACCAGAAA CTGTACCTCGTTTTCGAGTTCTTGGACGTCGATCTCAAGAGGTTCATCGAAACTGGGAACCAGAACCGCTCTCCC ATTACTCCTGCGCTCGTCAAGAAATTCACCCACCAACTGAACTCTGGCCTTCTCTACTGTCACTCGCACCGAATT CTCCACCGAGATCTGAAGCCCCAGAACCTCCTGATCGATAAACACAACAACCTCAAACTAGCTGATTTCGGTCTT GCGCGGGCTTTTGGTATCCCCATGCGAACCTATACGCATGAGGTCGTTACTCTCTGGTATCGCGCACCCGAGGTC CTCCTTGGTTCGCGCCACTACTCAACCGCTATCGACATGTGGTCCGTTGGCTGCATCTTTGCAGAGATGGCCATG CAGGGCGCTCCTCTCTTCCCTGGCGATTCAGAGATCGACCAGATCTTCAAGATCTTCAGGCTCTTGGGTACCCCC AACGAGGACATCTGGCCTGGTGTCAGCACGCTTCCCGATTACAAACCTACCTTCCCTAACTGGAGCCGGCAAGAC CTTGCCAAGGCCGTTCCCACTCTGGACGAGGCGGGCATCGACATGTTGAAGCGCACCCTCACCTACGATTCGGCC AAGCGCCTCTCTGCCAAGCGCGCACTCGTCCATCCATATTTCGCCGACTACAATAACAACTACAAGGCATGA |
Length | 897 |
Sequence id | CopciAB_373470.T0 |
---|---|
Sequence |
>CopciAB_373470.T0 AGCCTCTCTTTCACCTCGACAGCCATCTTCTTCAACCCTTTTCTTTCTCAACCACATTTCTCGACACCGACGAAA CGCCACCACGACGGCCAACAACCCAGTAGACCGCCATCGACGACGACCAGCAGCCTTTGGAAAGGCTCCAGAATC TTGGCTCTCTAGCCCCGTTTTGGCATTTTGAAGACTCGCTACCGACCTCGACATCGCTCAAGACGACCCCAACGA CCCGCACACAACGAAACCGCCTTTTGCATTGAACCATGGATCGATACGCAAAAATCGAAAAAGTCGGCGAAGGTA CCTATGGCGTTGTTTATAAGGCAAGAGATACAAGTACGAATACCATCGTCGCCCTGAAGAAGATCAGGCTCGAGG CTGAAGACGAGGGCGTTCCCAGTACTGCCATTCGTGAGATCAGCTTGCTCAAAGAGTTGAAGGATGACAACATCG TCAAGCTGCTGGATATCGTTCATGCGGACCAGAAACTGTACCTCGTTTTCGAGTTCTTGGACGTCGATCTCAAGA GGTTCATCGAAACTGGGAACCAGAACCGCTCTCCCATTACTCCTGCGCTCGTCAAGAAATTCACCCACCAACTGA ACTCTGGCCTTCTCTACTGTCACTCGCACCGAATTCTCCACCGAGATCTGAAGCCCCAGAACCTCCTGATCGATA AACACAACAACCTCAAACTAGCTGATTTCGGTCTTGCGCGGGCTTTTGGTATCCCCATGCGAACCTATACGCATG AGGTCGTTACTCTCTGGTATCGCGCACCCGAGGTCCTCCTTGGTTCGCGCCACTACTCAACCGCTATCGACATGT GGTCCGTTGGCTGCATCTTTGCAGAGATGGCCATGCAGGGCGCTCCTCTCTTCCCTGGCGATTCAGAGATCGACC AGATCTTCAAGATCTTCAGGCTCTTGGGTACCCCCAACGAGGACATCTGGCCTGGTGTCAGCACGCTTCCCGATT ACAAACCTACCTTCCCTAACTGGAGCCGGCAAGACCTTGCCAAGGCCGTTCCCACTCTGGACGAGGCGGGCATCG ACATGTTGAAGCGCACCCTCACCTACGATTCGGCCAAGCGCCTCTCTGCCAAGCGCGCACTCGTCCATCCATATT TCGCCGACTACAATAACAACTACAAGGCATGAACGAGCAAATCCACAAGTGTCACTGTTCCCCTTCTGCCTCACA TGTCGAAATAATTTGGGCTTTAGGACCTCGGTTTCGGTATCGAGTGTCTCTTTTCATCACAGTTATGAAGATATA TATATATAAGTTGTGCATATCGCTTTCTGATCGCTGTCCATCCCATCGTACTCATATCATCGCAAATGCATGTTT GTGATCACTGTC |
Length | 1362 |
Sequence id | CopciAB_373470.T0 |
---|---|
Sequence |
>CopciAB_373470.T0 AGCCTCTCTTTCACCTCGACAGCCATCTTCTTCAACCCTTTTCTTTCTCAACCACATTTCTCGACACCGACGAAA CGCCACCACGACGGCCAACAACCCAGTAGACCGCCATCGACGACGACCAGCAGCCTTTGGAAAGGCTCCAGAATC TTGTCGGTCTCTTTCCTGGAATCTTGGTTGCTGTTCATCGCCTCTGATCACCGTTCAGGGCTCTCTAGCCCCGTT TTGGCATTTTGAAGACTCGCTACCGACCTCGACATCGCTCAAGACGACCCCAACGACCCGCACACAACGAAACCG CCTTTTGCATTGAACCATGGATCGGTGGGTGCGACGTAGGCGCTGGATGAACGCAACGAGCTGATTGTCATCATC CATCTCTGTGGGATTCATTGGTCGCAGATACGCAAAAATCGAAAAAGTCGGTATGTGGCAGGTTGTCTGCTGGGA GACGTATAGACCACCCACCCTCGAGCGTCCGCACTGTAGGCGAAGGTGCGTAATTGGGGCCTTTCTTCACCAAAT CATCACGCTGACACCACGTTGTCTTGCTCGTGCATGATGGCAGGTACCTATGGCGTTGTTTATAAGGCAAGAGAT ACAAGTACGAATACCATCGTCGCCCTGAAGAAGATCAGGCTCGAGGCTGAAGACGAGGGCGTTCCCAGTACTGCC ATTCGTGAGATCAGCTTGCTCAAAGAGTTGAAGGATGACAACATCGTCAAGTCCGTGGGCTTTTAGTGTTTTCAT GGAGACGAGACTCTACTGGCATGGGATCGTTACTGACGGTATTCCTGATTCTCAGGCTGCTGGATATCGTTCATG CGGACCAGAAACTGTACCTCGTTTTCGAGTTCTTGGACGTCGATCTCAAGAGGTTCATCGAAACTGGGAACCAGA ACCGCTCTCCCATTACTCCTGCGCTCGTCAAGGTGGGTTCCCGGTGCGGCGATTTCGGTTTATTTCTTCTCCTCC CCCTGTCCCGAGGTCATGTGCCGCGCGCGGGCGCCCATAATTGCACGCGTCCGATTCACGCGTCTCGACGCGATG GGGCTATTTTTTCCACTTCCCCTTTGCTTTATCGTCTTCGGGCCACTCGTTTTCAGGCCGTCTGACACAGGACGA GAGCCTGTAATTTAAATTGGCTCGCGACTTTATGACATAAAGTCACGTGGCCTTACCGCGTCGTCGTCCTCGAAC TGGAGTCCATCTCACCGCCGCTTTTCTTTGCTAGAAATTCACCCACCAACTGAACTCTGGCCTTCTCTACTGTCA CTCGCACCGAATTCTCCACCGAGATCTGAAGCCCCAGAACCTCCTGATCGATAAACACAACAACCTCAAACTAGC TGATTTCGGTCTTGCGCGGGCTTTTGGTATCCCCATGCGAACCTATACGCATGAGGTAAGGGTCCCTCTCAACAG GGAATTCTGTTAGACTCACCTATGTGTAGGTCGTTACTCTCTGGTATCGCGCACCCGAGGTCCTCCTTGGTTCGC GCCACTACTCAACCGCTATCGACATGTGGTCCGTTGGCTGCATCTTTGCAGAGATGGCCATGCAGGGCGCTCCTC TCTTCCCTGGCGATTCAGAGATCGACCAGATCTTCAAGATCTTCAGGTAAGGAACGTTTTCATTAGAAAGTAGAA CGTATTGAACGGGTGACGATGTCAGGCTCTTGGGTACCCCCAACGAGGACATCTGGCCTGGTGTCAGCACGCTTC CCGATTACAAACCTACCTTCCCTAACTGGAGCCGGCAAGACCTTGCCAAGGCCGTTCCCACTCTGGACGAGGCGG GCATCGACATGTTGAAGGTGAGTTCCACGATTCAGTCCATCAATCGACGTCGATCGACCTGTTTGGCTGCCAACC CAGCGCACCCTCACCTACGATTCGGCCAAGCGCCTCTCTGGTATGCTCGTCTCAATTTTTGCGATCTGCGGTTGC GGGTAACTGACATCCCTACGAAGCCAAGCGCGCACTCGTCCATCCATATTTCGCCGACTACAATAACAACTACAA GGCATGAACGAGCAAATCCACAAGTGTCACTGTTCCCCTTCTGCCTCACATGTCGAAATAATTTGGGCTTTAGGA CCTCGGTTTCGGTATCGAGTGTCTCTTTTCATCACAGTTATGAAGATATATATATATAAGTTGTGCATATCGCTT TCTGATCGCTGTCCATCCCATCGTACTCATATCATCGCAAATGCATGTTTGTGATCACTGTC |
Length | 2237 |