Systematic name | CopciAB_374032 | Strain | Coprinopsis cinerea Okayama 7 |
---|---|---|---|
Standard name | - | Synonyms | 374032 |
Uniprot id | Functional description | Protein kinase domain | |
Location | scaffold_13:297277..298939 | Strand | - |
Gene length (nt) | 1663 | Transcript length (nt) | 1600 |
CDS length (nt) | 1476 | Protein length (aa) | 491 |
Strain name | Gene / Protein name |
---|---|
Aspergillus nidulans | AN10325_srpkD |
Neurospora crassa | stk-35 |
Strain name | Gene / Protein name | Pident | E-value | Bits |
---|---|---|---|---|
Hypsizygus marmoreus strain 51987-8 | Hypma_RDB29753 | 47.7 | 1.57E-129 | 420 |
Agaricus bisporus var bisporus (H97) | Agabi_varbisH97_2_152487 | 45.6 | 1.549E-123 | 402 |
Agaricus bisporus var. burnettii JB137-S8 | Agabi_varbur_1_102163 | 44.9 | 1.055E-118 | 388 |
Grifola frondosa | Grifr_OBZ66636 | 47.2 | 1.415E-105 | 350 |
Lentinula edodes NBRC 111202 | Lenedo1_1125812 | 42.6 | 1.651E-104 | 347 |
Lentinula edodes W1-26 v1.0 | Lentinedodes1_19085 | 42.6 | 1.638E-104 | 347 |
Lentinula edodes B17 | Lened_B_1_1_8355 | 42.4 | 3.075E-103 | 343 |
Agrocybe aegerita | Agrae_CAA7268662 | 45.8 | 1.81E-76 | 265 |
Auricularia subglabra | Aurde3_1_1179570 | 32.7 | 2.58E-52 | 194 |
Schizophyllum commune H4-8 | Schco3_2716838 | 27.1 | 8.089E-30 | 125 |
Name | Summary | Attribution | Assay type | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Carbon metabolism | Transcriptional changes along alternative morphogenetic paths of C. cinerea | Xie et al. 2020 | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Complex carbon sources 1 (long incubation) | Expression profiling on diverse complex carbon sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Coprinopsis challenged with bacteria | Transcriptional response to Bacillus subtilis and Escherichia coli. | Kombrink et al. 2018 | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Early development 1 | Time series expression profiling of basidiospore and oidium germination | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Early development 2 | Time series expression profiling of mycelial growth, light induction and fruiting body initiation. | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Fruiting body development | RNA-Seq analysis of fruiting body development | Krizsan et al. 2019 | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Nitrogen sources (12h incubation) | Expression profiling on diverse nitrogen sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Plant biomass (12h incubation) | Expression profiling on diverse plant biomasses as carbon sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Simple and complex carbon and nitrogen sources | Expression profiling on diverse complex carbon and nitrogen sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Simple and complex carbon sources (12h incubation) | Expression profiling on diverse complex carbon sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Starvation induced by water agar transfer | Expression profiling on starvation induced by transfer to water agar | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Straw time series | Time series expression profiling on straw as a carbon source | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Stress conditions 1 | Expression profiling under various stress conditions | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Stress conditions 2 | Expression profiling under various stress conditions | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
Systematic name | - |
---|---|
Protein id | CopciAB_374032.T0 |
Description | Protein kinase domain |
Analysis | Signature accession | Signature description | InterPro Accession | Start | End |
---|---|---|---|---|---|
Pfam | PF06293 | Lipopolysaccharide kinase (Kdo/WaaP) family | - | 199 | 243 |
Pfam | PF00069 | Protein kinase domain | IPR000719 | 299 | 487 |
Prediction | Start | End | Score |
---|---|---|---|
No records |
Domain n | Start | End | Length |
---|---|---|---|
No records |
Accession | Description |
---|---|
IPR000719 | Protein kinase domain |
IPR008266 | Tyrosine-protein kinase, active site |
IPR017441 | Protein kinase, ATP binding site |
IPR011009 | Protein kinase-like domain superfamily |
Go id | Term | Ontology |
---|---|---|
GO:0004672 | protein kinase activity | MF |
GO:0005524 | ATP binding | MF |
GO:0006468 | protein phosphorylation | BP |
KEGG Orthology |
---|
No records |
COG category | Description |
---|---|
T | Protein kinase domain |
Class | Family | Subfamily |
---|---|---|
No records |
Group |
---|
No records |
Arrow shows the origin of gene family containing CopciAB_374032.
Sequence id | CopciAB_374032.T0 |
---|---|
Sequence |
>CopciAB_374032.T0 MHPSCPLVARIQLSSYLFRIKRRPFPATKRFSSFMASPYPPISIGGPGGDYRYRPSNLDDVENVENYVEGVYHPV SIGDTLANGRYKLIHKLGFGGSSTVWLARDQQPDSTTPDAASLVALKVMAAHFSDRPPSAMQELLVPEKLHALFS ESRHPVKDHIHRIHRHFTETGPNGTHLCLVAPFCGPSLLAVADNLSYRYHRRIEGRVARRLAKQAALVIERMHSA GMVHGDITTSNMLFRLKESVQAMSDDAICAQLGEPVTEEVITASGDPPGPDAPRELVESIQASRFIEFSLVHDSI LVSDFGQSFLVDAMPEDYHPATTIHCTPPEVRFDQTISFASDVWMLACTLFEIRAGFSLFDSFLRSENLVWRQAV EMLGKLPDPWWNQWDARKVWFAESDGEPKPEEVQKEEGVLLVARKCTIRDKLELIGKKEEPPRGKDWPMTEPDET VMEEEEIKLLQDLLQKMLRYRPEERISMAEVIQHPWFNYKD |
Length | 491 |
Sequence id | CopciAB_374032.T0 |
---|---|
Sequence |
>CopciAB_374032.T0 ATGCATCCATCATGTCCGCTCGTTGCCCGAATCCAGCTCTCTTCATATCTTTTTAGGATCAAACGGAGACCTTTT CCCGCAACAAAACGGTTCTCATCCTTCATGGCTAGCCCTTACCCGCCAATTTCTATAGGAGGCCCTGGTGGCGAC TACCGCTACCGTCCTTCGAACCTCGACGACGTCGAAAATGTTGAAAACTACGTCGAAGGAGTCTACCATCCCGTC TCTATTGGCGACACCCTCGCCAACGGCCGCTATAAACTCATTCACAAGCTGGGCTTTGGCGGTTCCTCCACCGTA TGGCTTGCTCGGGACCAACAACCAGATTCTACCACTCCAGACGCGGCCAGCTTGGTGGCGCTGAAAGTCATGGCC GCGCATTTTTCAGACAGGCCCCCTTCGGCAATGCAGGAGCTTCTCGTTCCTGAGAAACTGCACGCCTTGTTTTCC GAGTCTCGTCATCCCGTAAAAGACCACATCCACCGTATCCACAGGCATTTCACCGAAACTGGACCCAACGGGACG CATCTCTGCTTGGTGGCGCCCTTTTGTGGCCCGAGTCTCCTTGCTGTTGCCGATAACCTCTCGTATCGGTACCAC AGGAGAATCGAAGGGCGCGTTGCACGACGGTTGGCGAAACAAGCTGCACTCGTCATCGAGCGCATGCATAGTGCC GGCATGGTCCATGGAGATATCACCACGTCAAATATGCTGTTCAGGCTCAAAGAAAGCGTGCAGGCCATGTCAGAC GACGCGATCTGCGCACAGCTCGGAGAACCCGTTACGGAGGAGGTGATCACTGCAAGTGGCGATCCTCCAGGGCCT GACGCGCCCCGTGAACTGGTGGAATCAATCCAAGCTTCCCGCTTTATAGAATTCTCCTTGGTGCATGACAGCATC CTTGTCTCAGACTTTGGGCAGTCCTTCCTCGTTGACGCCATGCCCGAAGATTACCATCCAGCCACGACCATCCAC TGCACCCCTCCGGAAGTCCGCTTCGATCAAACCATTTCCTTCGCCTCCGACGTTTGGATGCTCGCTTGCACCTTG TTCGAGATCCGCGCTGGATTCTCTCTCTTCGACTCATTCCTCAGAAGCGAGAATCTCGTGTGGAGGCAGGCGGTC GAGATGCTAGGCAAGCTACCAGATCCCTGGTGGAACCAGTGGGACGCTCGCAAAGTTTGGTTTGCCGAGTCCGAC GGAGAACCCAAACCGGAGGAGGTCCAGAAGGAGGAGGGCGTTCTGCTGGTTGCGCGCAAGTGCACCATTCGTGAC AAGCTGGAGCTCATCGGCAAGAAGGAGGAGCCTCCTCGAGGAAAGGATTGGCCGATGACGGAACCGGATGAGACG GTCATGGAGGAGGAGGAAATCAAGCTACTCCAGGATCTGCTGCAAAAGATGCTCAGGTACCGTCCGGAGGAGCGG ATTAGCATGGCGGAGGTGATTCAACATCCTTGGTTTAATTATAAAGACTAG |
Length | 1476 |
Sequence id | CopciAB_374032.T0 |
---|---|
Sequence |
>CopciAB_374032.T0 AGCGCTTAACGCCGAATGCATCCATCATGTCCGCTCGTTGCCCGAATCCAGCTCTCTTCATATCTTTTTAGGATC AAACGGAGACCTTTTCCCGCAACAAAACGGTTCTCATCCTTCATGGCTAGCCCTTACCCGCCAATTTCTATAGGA GGCCCTGGTGGCGACTACCGCTACCGTCCTTCGAACCTCGACGACGTCGAAAATGTTGAAAACTACGTCGAAGGA GTCTACCATCCCGTCTCTATTGGCGACACCCTCGCCAACGGCCGCTATAAACTCATTCACAAGCTGGGCTTTGGC GGTTCCTCCACCGTATGGCTTGCTCGGGACCAACAACCAGATTCTACCACTCCAGACGCGGCCAGCTTGGTGGCG CTGAAAGTCATGGCCGCGCATTTTTCAGACAGGCCCCCTTCGGCAATGCAGGAGCTTCTCGTTCCTGAGAAACTG CACGCCTTGTTTTCCGAGTCTCGTCATCCCGTAAAAGACCACATCCACCGTATCCACAGGCATTTCACCGAAACT GGACCCAACGGGACGCATCTCTGCTTGGTGGCGCCCTTTTGTGGCCCGAGTCTCCTTGCTGTTGCCGATAACCTC TCGTATCGGTACCACAGGAGAATCGAAGGGCGCGTTGCACGACGGTTGGCGAAACAAGCTGCACTCGTCATCGAG CGCATGCATAGTGCCGGCATGGTCCATGGAGATATCACCACGTCAAATATGCTGTTCAGGCTCAAAGAAAGCGTG CAGGCCATGTCAGACGACGCGATCTGCGCACAGCTCGGAGAACCCGTTACGGAGGAGGTGATCACTGCAAGTGGC GATCCTCCAGGGCCTGACGCGCCCCGTGAACTGGTGGAATCAATCCAAGCTTCCCGCTTTATAGAATTCTCCTTG GTGCATGACAGCATCCTTGTCTCAGACTTTGGGCAGTCCTTCCTCGTTGACGCCATGCCCGAAGATTACCATCCA GCCACGACCATCCACTGCACCCCTCCGGAAGTCCGCTTCGATCAAACCATTTCCTTCGCCTCCGACGTTTGGATG CTCGCTTGCACCTTGTTCGAGATCCGCGCTGGATTCTCTCTCTTCGACTCATTCCTCAGAAGCGAGAATCTCGTG TGGAGGCAGGCGGTCGAGATGCTAGGCAAGCTACCAGATCCCTGGTGGAACCAGTGGGACGCTCGCAAAGTTTGG TTTGCCGAGTCCGACGGAGAACCCAAACCGGAGGAGGTCCAGAAGGAGGAGGGCGTTCTGCTGGTTGCGCGCAAG TGCACCATTCGTGACAAGCTGGAGCTCATCGGCAAGAAGGAGGAGCCTCCTCGAGGAAAGGATTGGCCGATGACG GAACCGGATGAGACGGTCATGGAGGAGGAGGAAATCAAGCTACTCCAGGATCTGCTGCAAAAGATGCTCAGGTAC CGTCCGGAGGAGCGGATTAGCATGGCGGAGGTGATTCAACATCCTTGGTTTAATTATAAAGACTAGGTTTATCGA TACACCGAACTCAACTGTGGAAGACTAGTCTCGCCTACCATTGTTCTCCTCCCAAGTGTACGCCTCCTCTTCCAC GCCTATTGAAGCTGTGTCATTCGTC |
Length | 1600 |
Sequence id | CopciAB_374032.T0 |
---|---|
Sequence |
>CopciAB_374032.T0 AGCGCTTAACGCCGAATGCATCCATCATGTCCGCTCGTTGCCCGAATCCAGCTCTCTTCATATCTTTTTAGGATC AAACGGAGACCTTTTCCCGCAACAAAACGGTTCTCATCCTTCATGGCTAGCCCTTACCCGCCAATTTCTATAGGA GGCCCTGGTGGCGACTACCGCTACCGTCCTTCGAACCTCGACGACGTCGAAAATGTTGAAAACTACGTCGAAGGA GTCTACCATCCCGTCTCTATTGGCGACACCCTCGCCAACGGCCGCTATAAACTCATTCACAAGCTGGGCTTTGGC GGTTCCTCCACCGTATGGCTTGCTCGGGACCAACAACCAGATTCTACCACTCCAGACGCGGCCAGCTTGGTGGCG CTGAAAGTCATGGCCGCGCATTTTTCAGACAGGCCCCCTTCGGCAATGCAGGAGCTTCTCGTTCCTGAGAAACTG CACGCCTTGTTTTCCGAGTCTCGTCATCCCGTAAAAGACCACATCCACCGTATCCACAGGCATTTCACCGAAACT GGACCCAACGGGACGCATCTCTGCTTGGTGGCGCCCTTTTGTGGCCCGAGTCTCCTTGCTGTTGCCGATAACCTC TCGTATCGGTACCACAGGAGAATCGAAGGGCGCGTTGCACGACGGTTGGCGAAACAAGCTGCACTCGTCATCGAG CGCATGCATAGTGCCGGCATGGTCCATGGAGGTTCGTGCTTTGACGTCTCTGTGCGACCTATCCTCACCCAGTGT CTGTTTCGCAACTTTACAGATATCACCACGTCAAATATGCTGTTCAGGCTCAAAGAAAGCGTGCAGGCCATGTCA GACGACGCGATCTGCGCACAGCTCGGAGAACCCGTTACGGAGGAGGTGATCACTGCAAGTGGCGATCCTCCAGGG CCTGACGCGCCCCGTGAACTGGTGGAATCAATCCAAGCTTCCCGCTTTATAGAATTCTCCTTGGTGCATGACAGC ATCCTTGTCTCAGACTTTGGGCAGTCCTTCCTCGTTGACGCCATGCCCGAAGATTACCATCCAGCCACGACCATC CACTGCACCCCTCCGGAAGTCCGCTTCGATCAAACCATTTCCTTCGCCTCCGACGTTTGGATGCTCGCTTGCACC TTGTTCGAGATCCGCGCTGGATTCTCTCTCTTCGACTCATTCCTCAGAAGCGAGAATCTCGTGTGGAGGCAGGCG GTCGAGATGCTAGGCAAGCTACCAGATCCCTGGTGGAACCAGTGGGACGCTCGCAAAGTTTGGTTTGCCGAGTCC GACGGAGAACCCAAACCGGAGGAGGTCCAGAAGGAGGAGGGCGTTCTGCTGGTTGCGCGCAAGTGCACCATTCGT GACAAGCTGGAGCTCATCGGCAAGAAGGAGGAGCCTCCTCGAGGAAAGGATTGGCCGATGACGGAACCGGATGAG ACGGTCATGGAGGAGGAGGAAATCAAGCTACTCCAGGATCTGCTGCAAAAGATGCTCAGGTACCGTCCGGAGGAG CGGATTAGCATGGCGGAGGTGATTCAACATCCTTGGTTTAATTATAAAGACTAGGTTTATCGATACACCGAACTC AACTGTGGAAGACTAGTCTCGCCTACCATTGTTCTCCTCCCAAGTGTACGCCTCCTCTTCCACGCCTATTGAAGC TGTGTCATTCGTC |
Length | 1663 |