CopciAB_374320
Coprinopsis cinerea A43mutB43mut pab1-1 #326

General data

Systematic name CopciAB_374320 Strain Coprinopsis cinerea Okayama 7
Standard name - Synonyms 374320
Uniprot id Functional description protein Coprinopsis cinerea okayama7 130
Location scaffold_9:1200743..1202097 Strand +
Gene length (nt) 1355 Transcript length (nt) 1235
CDS length (nt) 948 Protein length (aa) 315

Reciprocal best hits in model fungi

Strain name Gene / Protein name

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
Grifola frondosa Grifr_OBZ77296 38.1 4.683E-64 221
Lentinula edodes NBRC 111202 Lenedo1_1169066 33 8.274E-44 162
Agrocybe aegerita Agrae_CAA7271258 39.1 2.483E-37 143
Lentinula edodes W1-26 v1.0 Lentinedodes1_6814 33.3 2.831E-31 125
Lentinula edodes B17 Lened_B_1_1_3721 33.8 5.106E-24 103
Auricularia subglabra Aurde3_1_1229111 30.3 1.012E-21 97
Ganoderma sp. 10597 SS1 v1.0 Gansp1_109484 29.6 2.232E-17 83
Agaricus bisporus var bisporus (H97) Agabi_varbisH97_2_191477 31.1 0 44
Agaricus bisporus var. burnettii JB137-S8 Agabi_varbur_1_114440 31.1 0 44
Pleurotus ostreatus PC9 PleosPC9_1_121819 45.2 0.0001 43
Pleurotus eryngii ATCC 90797 Pleery1_592776 45.2 0.0003 42
Pleurotus ostreatus PC15 PleosPC15_2_164797 44.4 0.0002 42

Expression

Name Summary Attribution Assay type
Carbon metabolism Transcriptional changes along alternative morphogenetic paths of C. cinerea Xie et al. 2020 RNA-Seq
Sample Mean cpm SD cpm Se of mean
sclerotia 85.3271 4.6114 2.6624
oidia 53.5282 11.5856 6.6889
vegetative_mycelium 66.0389 6.5472 3.78
primordia 38.2955 6.5503 3.7818
hyphal_knot 40.4574 3.5831 2.0687
young_fruiting_body 13.7047 2.9389 1.6968
Complex carbon sources 1 (long incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control - glucose 41.5954 4.6779 2.7008
Wheat bran 55.6402 4.9498 2.8577
Horse manure 69.7838 14.5778 8.4165
Oak leaves 31.1608 14.8501 8.5737
Hay 47.3069 4.4878 2.591
Corn stalk 51.8257 2.8269 1.6321
Pectine 83.3576 5.9418 3.4305
Microcrystalline cellulose 60.3368 7.3092 4.22
Xylose 65.3026 22.4648 12.97
Cellobiose 42.8042 3.3044 1.9078
Lignin 79.3509 46.1933 26.6697
Apple peels 57.8724 10.8113 6.2419
Coprinopsis challenged with bacteria Transcriptional response to Bacillus subtilis and Escherichia coli. Kombrink et al. 2018 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control 102.6247 9.9209 5.7279
Bsubtilis 118.9007 12.8039 7.3923
Ecoli 65.175 5.2806 3.0487
Early development 1 Time series expression profiling of basidiospore and oidium germination Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
BS 0h 1.1845 0.8671 0.5006
BS 4h 8.8766 3.1863 1.8396
BS 8h 24.1274 2.8598 1.6511
BS 12h 40.2202 5.6705 3.2739
Oidia 0 h 25.4714 10.6164 6.1294
Oidia 18 h 41.7277 1.9367 1.1181
Sclerotia 36.4623 5.0975 2.943
Early development 2 Time series expression profiling of mycelial growth, light induction and fruiting body initiation. Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
DM 12h 30.9577 4.4555 2.5724
DM 36h 42.5392 5.9892 3.4578
DM 60h 38.5219 19.1199 11.0389
DM 84h 17.0997 1.1849 0.6841
DM 108h 27.1128 1.9831 1.1449
DM 132h 30.5749 5.0828 2.9346
DM 156hAE 24.0033 4.1515 2.3968
ELI1hAE 50.9551 2.7523 1.589
ELI2hAE 39.1909 5.0094 2.8922
LI2hAE 44.4161 10.3914 5.9995
LI6hAE 75.9891 8.6646 5.0025
LI12hAE 43.4882 6.307 3.6414
LI18hAE 45.7734 4.6619 2.6915
LI 24hAE 47.2823 7.5587 4.364
DM 156hAM 19.3083 2.0909 1.2072
ELI1hAM 52.8921 5.82 3.3602
ELI2hAM 37.5492 5.4163 3.1271
LI2hAM 39.0219 2.8796 1.6625
LI6hAM 42.7076 3.7522 2.1663
LI12hAM 33.5246 8.6692 5.0051
LI18hAM 33.1895 2.9736 1.7168
LI 24hAM 25.8073 1.592 0.9191
LI 24hHK 40.8953 1.1315 0.6533
L/D 6h 54.3353 25.5683 14.7619
L/D 12h 60.4495 50.0639 28.9044
L/D 18h 106.6921 52.5358 30.3316
L/D 24h 139.1786 31.3255 18.0858
Fruiting body development RNA-Seq analysis of fruiting body development Krizsan et al. 2019 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Vegetative mycelium 19.3742 7.7214 4.4579
Hyphal knots 100.5824 26.2612 15.1619
Primordium 1 167.641 50.7713 29.3128
Primordium 2 116.7913 45.9033 26.5023
Young Fruiting body cap 53.0771 7.9708 4.6019
Younf fruiting body gill 9.2403 0.6385 0.3687
Young fruiting body stipe 29.1388 15.8378 9.144
Mature fruiting body cap_gill 13.8834 1.1931 0.6889
Mature fruiting body stipe 11.2857 0.5773 0.3333
Nitrogen sources (12h incubation) Expression profiling on diverse nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Complete medium - control 35.7252 16.9546 9.7888
NH4NO3 79.4946 4.7624 2.7496
Proline 39.7823 14.9663 8.6408
Tryptophan 34.767 1.2075 0.6971
Isoleucin 65.5248 4.1198 2.3785
Arginine 35.0585 3.7851 2.1853
Metionine 27.6966 7.994 4.6153
NaNO3 28.0056 1.0453 0.6035
Plant biomass (12h incubation) Expression profiling on diverse plant biomasses as carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 35.7252 16.9546 9.7888
Citrus peel 14.7867 1.128 0.6513
Poplar leaves 27.3622 7.0409 4.0651
Typha leaves 18.3056 3.4801 2.0092
Overwintered Salix leaves 26.6683 7.5877 4.3808
Reed flowering 12.9393 4.7223 2.7264
Tigernut 16.5234 5.6054 3.2363
Energy cane 21.6351 11.9463 6.8972
Guar gum 36.9252 24.7006 14.2609
Apple peels 44.9242 15.3669 8.8721
Cellobiose 56.9863 8.191 4.7291
Corn stalk 29.8579 3.4263 1.9782
Horse manure 24.1254 5.4374 3.1393
Lignin 27.815 28.1527 16.254
Microcrystalline cellulose 34.9473 17.6385 10.1836
Oak leaves 19.7184 5.4643 3.1548
Pectin esterified 21.3419 12.2449 7.0696
Poplar sawdust 32.1295 5.6697 3.2734
Wheat bran 23.2911 1.7043 0.984
Chlamydomonas reinhardtii 55.1508 1.3709 0.7915
Vertatryl alcohol 58.7653 8.91 5.1442
Furfural 29.6876 9.1408 5.2774
Autoclaved mycelium 51.1571 10.9817 6.3403
Simple and complex carbon and nitrogen sources Expression profiling on diverse complex carbon and nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 82.9278 10.7432 6.2026
Ribose 74.1871 2.7997 1.6164
Mannose 82.5987 16.9297 11.9711
Fructose 92.7629 13.9957 8.0804
Arabinose 74.9418 5.8178 3.3589
Xylose 73.9965 4.6303 2.6733
Galacturonic acid 73.9682 6.9843 4.0324
Rhamnogalacturonan 78.6586 6.049 3.4924
Pectin esterified 78.5273 7.2362 4.1778
Polygalacturonic acid 78.7033 4.228 2.441
Sodium acetate 78.7544 10.8199 6.2469
No nitrogen 72.6427 6.7827 3.916
BSA 97.708 13.2486 7.6491
Glutamine 82.8994 2.6408 1.5247
No phosphate 64.5849 6.333 3.6564
No carbon 74.1787 2.1776 1.5398
No sulphur 122.9186 8.2528 4.7647
Simple and complex carbon sources (12h incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 35.7252 16.9546 9.7888
Amylose 56.6411 7.6323 4.4065
Fucose 62.0316 6.3506 3.6665
Galactose 53.1758 8.4103 4.8557
Lactose 55.51 12.2462 7.0704
Maltose 51.486 4.2214 2.4372
Mannitol 50.7098 12.2535 7.0746
Rhamnose 48.9705 4.1344 2.387
Sorbitol 60.9629 6.5747 3.7959
Trehalose 52.9256 17.233 9.9495
Glycerol 56.9992 23.9921 13.8519
Glucuronic acid 56.1068 3.882 2.2412
Arabinan 52.0339 19.6125 11.3233
Galactan 43.3536 7.6949 4.4426
Galactomannan 30.8339 9.8438 5.6833
Glucan 39.5767 9.3959 5.4247
Xylan 52.7667 13.7332 7.9288
Xyloglucan 48.8966 9.4697 5.4673
Arabinogalactan 58.125 6.8257 3.9408
Pectin 11.5869 1.7008 0.982
Rhamnogalacturonan 10.1747 3.1598 1.8243
Polygalacturonic acid 46.7333 20.4142 11.7861
Mannan 48.2487 7.7574 4.4788
Amylopectin 40.5714 13.4418 7.7606
Inulin 81.1921 12.2262 7.0588
BSA 15.0414 0.4434 0.256
Starvation induced by water agar transfer Expression profiling on starvation induced by transfer to water agar Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Control 38.5219 19.1199 11.0389
2h WAT 20.3015 5.929 3.4231
4h WAT 14.0414 2.5564 1.476
8h WAT 19.6915 0.424 0.2448
16h WAT 18.5941 0.5188 0.2995
24h WAT 18.3737 0.4011 0.2316
WAT hyphal knot -30h 27.1645 1.9964 1.1526
WAT hyphal knot -22h 29.28 4.8385 2.7935
WAT hyphal knot -15h 38.7266 4.1601 2.4018
WAT hyphal knot -7.5h 47.7014 7.4247 4.2866
WAT hyphal knot 41.0344 7.3487 4.2428
WAT hyphal knot +7.5h 65.2182 6.751 3.8977
Straw time series Time series expression profiling on straw as a carbon source Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 28.2948 9.3325 5.3881
Straw 3h 18.3307 4.2351 2.4451
Straw 6h 23.712 9.6343 5.5624
Straw 12h 17.6696 2.9681 1.7137
Straw 24h 18.9598 6.6938 3.8647
Stress conditions 1 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 20.6419 7.0024 4.0428
Frost (-20C, 30min) 34.608 3.3332 1.9244
Heat shock (47C, 2h) 6.8887 1.2768 0.7372
High CO2 35.0225 10.6657 6.1578
Drought (4% agar, 12h) 43.3816 12.8673 7.4289
Oxidative (1mM H2O2, 3h) 22.0904 4.3188 2.4934
Acidic (pH4, 3h) 16.1031 1.4721 0.8499
Alkaline (pH9, 3h) 20.5111 4.9277 2.845
Osmotic (sorbitol 2h) 36.7474 12.8048 7.3928
CongoRed (3h) 30.6997 7.1159 4.1083
Cobalt chloride control 29.3547 3.1836 1.8381
Cobalt chloride 2mM 32.6119 6.3337 3.6568
Stress conditions 2 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 19.2803 1.2162 0.7022
Cold stimulation 20.4868 9.0496 5.2248
Scratched surface 58.8791 4.4306 2.558
Ca2+, 200mM, 24h 64.9156 6.3506 3.6665
Cu2+, 2mM, 6h 13.6148 6.3322 3.6559
Voriconazole 39.8866 8.6308 4.983
Trichoderma interaction, early 61.2871 11.7671 6.7937
Trichoderma interaction 60h 14.3728 11.0583 6.3845
Cobalt chloride 2mM repeat 20.1465 5.2289 3.0189
Hypoxia 28.2026 4.8618 2.8069
Hypoxia control 22.4982 5.6946 3.2878
Protoplastation control 20.5052 0.4142 0.2929
Protoplastation 3.5h 32.2523 10.3171 7.2953
Protoplastation 1.5h 28.554 4.3947 3.1075

General data

Systematic name -
Protein id CopciAB_374320.T0
Description protein Coprinopsis cinerea okayama7 130

Annotation summary

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
No records

SignalP

Prediction Start End Score
No records

Transmembrane domains

Domain n Start End Length
No records

InterPro

Accession Description
No records

GO

Go id Term Ontology
No records

KEGG

KEGG Orthology
No records

EggNOG

COG category Description
S protein Coprinopsis cinerea okayama7 130

CAZy

Class Family Subfamily
No records

Transcription factor

Group
No records

Conservation of CopciAB_374320 across fungi.

Arrow shows the origin of gene family containing CopciAB_374320.

Protein

Sequence id CopciAB_374320.T0
Sequence >CopciAB_374320.T0
MSAVNEQKAVATNAIKVLTVVDWAQTSKGKPVYVQFTRQKPPPVEATRTWRGEVLPNPPPRPPSKLPPPACNELV
VSTQNAIGQGRCGTIFAVDTMRMTNPKNPSFRLFHPRAPYLPDLVIKVAALDRAESLAHEAAMYEEMELLQGVSL
PRCYGLFTANLPSDIVIPALGSEKLPPLTPSNPVQSNNRQVSILLLERVGDPLPLGDKLQEEGDLWDVFRDLARM
GIEQTDIRYSNILQAPNSSGSFPSTVCPFHGTVHNYRIIDFDSARKTDLTLKRHYFNTLEYLGPILENMKQGVIV
EPWDIKTKPDRPSAL
Length 315

Coding

Sequence id CopciAB_374320.T0
Sequence >CopciAB_374320.T0
ATGAGCGCCGTCAACGAGCAGAAAGCAGTGGCTACCAATGCCATCAAGGTCCTAACCGTCGTTGACTGGGCCCAA
ACATCCAAAGGGAAACCTGTTTACGTGCAGTTCACCAGGCAGAAGCCTCCACCAGTTGAGGCCACACGTACATGG
CGAGGAGAGGTGCTTCCAAACCCTCCTCCCCGTCCCCCATCCAAACTTCCTCCCCCGGCCTGCAACGAGCTCGTA
GTCTCGACCCAAAATGCCATTGGTCAAGGTCGTTGTGGGACCATATTCGCTGTGGACACCATGCGAATGACCAAC
CCCAAGAACCCGTCGTTTAGACTATTCCATCCCCGAGCTCCCTATCTGCCCGACCTGGTCATAAAAGTGGCCGCT
CTCGATCGTGCTGAAAGTCTCGCCCACGAGGCTGCCATGTACGAGGAGATGGAGCTGCTCCAAGGCGTCTCTCTT
CCTCGTTGCTATGGCTTGTTCACGGCCAACCTCCCCTCCGACATCGTGATCCCCGCATTGGGTTCTGAGAAGCTC
CCGCCCTTGACACCCTCTAACCCCGTCCAATCCAATAACAGACAAGTGTCAATCCTTCTACTCGAGCGAGTCGGA
GATCCATTGCCACTCGGCGACAAACTCCAGGAAGAAGGCGATCTTTGGGACGTATTCCGGGATCTCGCCCGCATG
GGTATTGAACAAACCGACATACGGTATTCCAACATCCTCCAGGCGCCGAACTCGTCGGGCAGCTTCCCAAGCACC
GTCTGCCCCTTCCACGGCACAGTCCACAATTACCGCATCATCGACTTCGATTCCGCAAGGAAGACTGACCTTACG
TTAAAACGACACTACTTCAATACCCTCGAATACCTCGGTCCCATCCTTGAAAACATGAAGCAGGGCGTCATCGTC
GAGCCATGGGACATCAAAACGAAACCCGACAGGCCAAGCGCTCTGTGA
Length 948

Transcript

Sequence id CopciAB_374320.T0
Sequence >CopciAB_374320.T0
ACAAATATCCCCCAAGCCCTCTTTTTTCTTCACACATTCAGAACTCTTCGTTATGAGCGCCGTCAACGAGCAGAA
AGCAGTGGCTACCAATGCCATCAAGGTCCTAACCGTCGTTGACTGGGCCCAAACATCCAAAGGGAAACCTGTTTA
CGTGCAGTTCACCAGGCAGAAGCCTCCACCAGTTGAGGCCACACGTACATGGCGAGGAGAGGTGCTTCCAAACCC
TCCTCCCCGTCCCCCATCCAAACTTCCTCCCCCGGCCTGCAACGAGCTCGTAGTCTCGACCCAAAATGCCATTGG
TCAAGGTCGTTGTGGGACCATATTCGCTGTGGACACCATGCGAATGACCAACCCCAAGAACCCGTCGTTTAGACT
ATTCCATCCCCGAGCTCCCTATCTGCCCGACCTGGTCATAAAAGTGGCCGCTCTCGATCGTGCTGAAAGTCTCGC
CCACGAGGCTGCCATGTACGAGGAGATGGAGCTGCTCCAAGGCGTCTCTCTTCCTCGTTGCTATGGCTTGTTCAC
GGCCAACCTCCCCTCCGACATCGTGATCCCCGCATTGGGTTCTGAGAAGCTCCCGCCCTTGACACCCTCTAACCC
CGTCCAATCCAATAACAGACAAGTGTCAATCCTTCTACTCGAGCGAGTCGGAGATCCATTGCCACTCGGCGACAA
ACTCCAGGAAGAAGGCGATCTTTGGGACGTATTCCGGGATCTCGCCCGCATGGGTATTGAACAAACCGACATACG
GTATTCCAACATCCTCCAGGCGCCGAACTCGTCGGGCAGCTTCCCAAGCACCGTCTGCCCCTTCCACGGCACAGT
CCACAATTACCGCATCATCGACTTCGATTCCGCAAGGAAGACTGACCTTACGTTAAAACGACACTACTTCAATAC
CCTCGAATACCTCGGTCCCATCCTTGAAAACATGAAGCAGGGCGTCATCGTCGAGCCATGGGACATCAAAACGAA
ACCCGACAGGCCAAGCGCTCTGTGATACCCACCCCCTCCTGGACCCACTATCACACTCACAGCAACTCAACTTGC
ATCACATGTACTACTAGTCTCGTCATGTCCCCCGCATGACCCTGCATTCAACATTGGACTTTGAATCATCACATT
TTGTCACCCCATTATCGGTTTCTAAATCGAGCATGTCGTCGCTATTGTTTATACCTTGGATCTTACCTGCTATGT
CTGTTTTCTGGCCTCAATGTGACCGCAACATTTTG
Length 1235

Gene

Sequence id CopciAB_374320.T0
Sequence >CopciAB_374320.T0
ACAAATATCCCCCAAGCCCTCTTTTTTCTTCACACATTCAGAACTCTTCGTTATGAGCGCCGTCAACGAGCAGAA
AGCAGTGGTAAGTCGTCTGACCAGCTCTATATCAACGTTCGAGGACGCTCACACCTAGTTTCAGGCTACCAATGC
CATCAAGGTCCTAACCGTCGTTGACTGGGCCCAAACATCCAAAGGGAAACCTGTTTACGTGCAGTTCACCAGGCA
GAAGCCTCCACCAGTTGAGGCCACACGTACATGGCGAGGAGAGGTGCTTCCAAACCCTCCTCCCCGTCCCCCATC
CAAACTTCCTCCCCCGGCCTGCAACGAGCTCGTAGTCTCGACCCAAAATGCCATTGGTCAAGGTCGTTGTGGGAC
CATATTCGCTGTGGACACCATGCGAATGACCAACCCCAAGAACCCGTCGTTTAGACTATTCCATCCCCGAGCTCC
CTATCTGCCCGACCTGGTCATAAAAGTGGCCGCTCTCGATCGTGCTGAAAGTCTCGCCCACGAGGCTGCCATGTA
CGAGGAGATGGAGCTGCTCCAAGGCGTCTCTCTTCCTCGTTGCTATGGCTTGTTCACGGCCAACCTCCCCTCCGA
CATCGTGATCCCCGCATTGGGTTCTGAGAAGCTCCCGCCCTTGACACCCTCTAACCCCGTCCAATCCAATAACAG
ACAAGTGTCAATCCTTCTACTCGAGCGAGTCGGAGATCCATTGCCACTCGGCGACAAACTCCAGGAAGAGTAAGT
CACTCCAACAGCTTGGCTCGAAGCAGGTGACCGATGAAACTGACATGCTCCTCACAGAGGCGATCTTTGGGACGT
ATTCCGGGATCTCGCCCGCATGGGTATTGAACAAACCGACATACGGTATTCCAACATCCTCCAGGCGCCGAACTC
GTCGGGCAGCTTCCCAAGCACCGTCTGCCCCTTCCACGGCACAGTCCACAATTACCGCATCATCGACTTCGATTC
CGCAAGGAAGACTGACCTTACGTTAAAACGACACTACTTCAATACCCTCGAATACCTCGGTCCCATCCTTGAAAA
CATGAAGCAGGGCGTCATCGTCGAGCCATGGGACATCAAAACGAAACCCGACAGGCCAAGCGCTCTGTGATACCC
ACCCCCTCCTGGACCCACTATCACACTCACAGCAACTCAACTTGCATCACATGTACTACTAGTCTCGTCATGTCC
CCCGCATGACCCTGCATTCAACATTGGACTTTGAATCATCACATTTTGTCACCCCATTATCGGTTTCTAAATCGA
GCATGTCGTCGCTATTGTTTATACCTTGGATCTTACCTGCTATGTCTGTTTTCTGGCCTCAATGTGACCGCAACA
TTTTG
Length 1355