CopciAB_379412
Coprinopsis cinerea A43mutB43mut pab1-1 #326

General data

Systematic name CopciAB_379412 Strain Coprinopsis cinerea Okayama 7
Standard name - Synonyms 379412
Uniprot id Functional description CMGC CLK protein kinase
Location scaffold_11:1986671..1988004 Strand -
Gene length (nt) 1334 Transcript length (nt) 1026
CDS length (nt) 1026 Protein length (aa) 341

Reciprocal best hits in model fungi

Strain name Gene / Protein name

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
0

Expression

Name Summary Attribution Assay type
Carbon metabolism Transcriptional changes along alternative morphogenetic paths of C. cinerea Xie et al. 2020 RNA-Seq
Sample Mean cpm SD cpm Se of mean
sclerotia 0 0 0
oidia 0 0 0
vegetative_mycelium 0 0 0
primordia 0 0 0
hyphal_knot 0 0 0
young_fruiting_body 0 0 0
Complex carbon sources 1 (long incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control - glucose 0 0 0
Wheat bran 0 0 0
Horse manure 0 0 0
Oak leaves 0 0 0
Hay 0 0 0
Corn stalk 0 0 0
Pectine 0 0 0
Microcrystalline cellulose 0 0 0
Xylose 0 0 0
Cellobiose 0 0 0
Lignin 0 0 0
Apple peels 0 0 0
Coprinopsis challenged with bacteria Transcriptional response to Bacillus subtilis and Escherichia coli. Kombrink et al. 2018 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control 0 0 0
Bsubtilis 0 0 0
Ecoli 0 0 0
Early development 1 Time series expression profiling of basidiospore and oidium germination Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
BS 0h 0 0 0
BS 4h 0 0 0
BS 8h 0 0 0
BS 12h 0 0 0
Oidia 0 h 0 0 0
Oidia 18 h 0 0 0
Sclerotia 0 0 0
Early development 2 Time series expression profiling of mycelial growth, light induction and fruiting body initiation. Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
DM 12h 0 0 0
DM 36h 0 0 0
DM 60h 0 0 0
DM 84h 0 0 0
DM 108h 0.003 0.0051 0.003
DM 132h 0 0 0
DM 156hAE 0 0 0
ELI1hAE 0 0 0
ELI2hAE 0 0 0
LI2hAE 0 0 0
LI6hAE 0 0 0
LI12hAE 0 0 0
LI18hAE 0 0 0
LI 24hAE 0 0 0
DM 156hAM 0 0 0
ELI1hAM 0 0 0
ELI2hAM 0 0 0
LI2hAM 0 0 0
LI6hAM 0.0149 0.0257 0.0149
LI12hAM 0.0042 0.0072 0.0042
LI18hAM 0.0078 0.0136 0.0078
LI 24hAM 0.0098 0.0169 0.0098
LI 24hHK 0 0 0
L/D 6h 0 0 0
L/D 12h 0 0 0
L/D 18h 0.01 0.0173 0.01
L/D 24h 0.003 0.0052 0.003
Fruiting body development RNA-Seq analysis of fruiting body development Krizsan et al. 2019 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Vegetative mycelium 0 0 0
Hyphal knots 0 0 0
Primordium 1 0 0 0
Primordium 2 0 0 0
Young Fruiting body cap 0 0 0
Younf fruiting body gill 0 0 0
Young fruiting body stipe 0 0 0
Mature fruiting body cap_gill 0 0 0
Mature fruiting body stipe 0 0 0
Nitrogen sources (12h incubation) Expression profiling on diverse nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Complete medium - control 0 0 0
NH4NO3 0 0 0
Proline 0 0 0
Tryptophan 0 0 0
Isoleucin 0 0 0
Arginine 0 0 0
Metionine 0 0 0
NaNO3 0 0 0
Plant biomass (12h incubation) Expression profiling on diverse plant biomasses as carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 0 0 0
Citrus peel 0 0 0
Poplar leaves 0 0 0
Typha leaves 0 0 0
Overwintered Salix leaves 0 0 0
Reed flowering 0 0 0
Tigernut 0 0 0
Energy cane 0 0 0
Guar gum 0 0 0
Apple peels 0 0 0
Cellobiose 0 0 0
Corn stalk 0 0 0
Horse manure 0 0 0
Lignin 0 0 0
Microcrystalline cellulose 0 0 0
Oak leaves 0 0 0
Pectin esterified 0 0 0
Poplar sawdust 0 0 0
Wheat bran 0 0 0
Chlamydomonas reinhardtii 0 0 0
Vertatryl alcohol 0 0 0
Furfural 0 0 0
Autoclaved mycelium 0 0 0
Simple and complex carbon and nitrogen sources Expression profiling on diverse complex carbon and nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 0 0 0
Ribose 0 0 0
Mannose 0 0 0
Fructose 0 0 0
Arabinose 0 0 0
Xylose 0 0 0
Galacturonic acid 0 0 0
Rhamnogalacturonan 0 0 0
Pectin esterified 0 0 0
Polygalacturonic acid 0 0 0
Sodium acetate 0 0 0
No nitrogen 0 0 0
BSA 0 0 0
Glutamine 0 0 0
No phosphate 0 0 0
No carbon 0 0 0
No sulphur 0 0 0
Simple and complex carbon sources (12h incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 0 0 0
Amylose 0 0 0
Fucose 0 0 0
Galactose 0 0 0
Lactose 0 0 0
Maltose 0 0 0
Mannitol 0 0 0
Rhamnose 0 0 0
Sorbitol 0 0 0
Trehalose 0 0 0
Glycerol 0 0 0
Glucuronic acid 0 0 0
Arabinan 0 0 0
Galactan 0 0 0
Galactomannan 0 0 0
Glucan 0 0 0
Xylan 0 0 0
Xyloglucan 0 0 0
Arabinogalactan 0 0 0
Pectin 0 0 0
Rhamnogalacturonan 0 0 0
Polygalacturonic acid 0 0 0
Mannan 0 0 0
Amylopectin 0 0 0
Inulin 0 0 0
BSA 0 0 0
Starvation induced by water agar transfer Expression profiling on starvation induced by transfer to water agar Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Control 0 0 0
2h WAT 0 0 0
4h WAT 0 0 0
8h WAT 0 0 0
16h WAT 0 0 0
24h WAT 0.0261 0.0453 0.0261
WAT hyphal knot -30h 0.0023 0.0041 0.0023
WAT hyphal knot -22h 0.0094 0.0163 0.0094
WAT hyphal knot -15h 0 0 0
WAT hyphal knot -7.5h 0 0 0
WAT hyphal knot 0 0 0
WAT hyphal knot +7.5h 0 0 0
Straw time series Time series expression profiling on straw as a carbon source Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 0 0 0
Straw 3h 0 0 0
Straw 6h 0 0 0
Straw 12h 0 0 0
Straw 24h 0 0 0
Stress conditions 1 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 0 0 0
Frost (-20C, 30min) 0.017 0.0295 0.017
Heat shock (47C, 2h) 0 0 0
High CO2 0.0106 0.0184 0.0106
Drought (4% agar, 12h) 0 0 0
Oxidative (1mM H2O2, 3h) 0.009 0.0156 0.009
Acidic (pH4, 3h) 0 0 0
Alkaline (pH9, 3h) 0 0 0
Osmotic (sorbitol 2h) 0 0 0
CongoRed (3h) 0.0125 0.0217 0.0125
Cobalt chloride control 0 0 0
Cobalt chloride 2mM 0 0 0
Stress conditions 2 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 0 0 0
Cold stimulation 0 0 0
Scratched surface 0.0294 0.051 0.0294
Ca2+, 200mM, 24h 0 0 0
Cu2+, 2mM, 6h 0 0 0
Voriconazole 0 0 0
Trichoderma interaction, early 0 0 0
Trichoderma interaction 60h 0 0 0
Cobalt chloride 2mM repeat 0 0 0
Hypoxia 0.0123 0.0212 0.0123
Hypoxia control 0 0 0
Protoplastation control 0 0 0
Protoplastation 3.5h 0 0 0
Protoplastation 1.5h 0 0 0

General data

Systematic name -
Protein id CopciAB_379412.T0
Description CMGC CLK protein kinase

Annotation summary

0 100 200 300 341

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
Pfam PF00069 Protein kinase domain IPR000719 34 338

SignalP

Prediction Start End Score
No records

Transmembrane domains

Domain n Start End Length
No records

InterPro

Accession Description
IPR011009 Protein kinase-like domain superfamily
IPR008271 Serine/threonine-protein kinase, active site
IPR000719 Protein kinase domain

GO

Go id Term Ontology
GO:0004672 protein kinase activity MF
GO:0006468 protein phosphorylation BP
GO:0005524 ATP binding MF

KEGG

KEGG Orthology
K08287
K08823

EggNOG

COG category Description
T CMGC CLK protein kinase

CAZy

Class Family Subfamily
No records

Transcription factor

Group
No records

Conservation of CopciAB_379412 across fungi.

Arrow shows the origin of gene family containing CopciAB_379412.

Protein

Sequence id CopciAB_379412.T0
Sequence >CopciAB_379412.T0
MLPAHELKRLIERRFEERASIESTISANFHKCLFKGFDHRFGVKIIIKAIATGTDERFERKRIRRLTNALDRAAN
MFPHVQSLATLMDYEVHPSHTFLVFKAYGKTLTEVMTMQQLLPLPSSQIKGIAFQILSALRFLHGEDIAHTDIKP
DNIVLVDDAVASYEDFQNGEFVTKYLLKNISVKLVDYDDFTDLHAIPRPRHLVGTSIYRPPEVILNMPWSTPVDI
FAFGCTIAELYLGRPLFPHSTGPSHQLAIIEERLGRFPHSFIDRVNRGGFNVFRPNGEVDCAEPVAQHLAVEERK
HISLCILRPNLLDLLKLCLHHDDKKRCSAKAALQHRFFKRR
Length 341

Coding

Sequence id CopciAB_379412.T0
Sequence >CopciAB_379412.T0
ATGCTCCCTGCTCACGAACTCAAGCGACTTATTGAGAGAAGATTCGAAGAAAGAGCATCTATTGAGAGTACTATT
AGTGCCAACTTTCATAAATGCCTTTTTAAAGGCTTTGACCATCGATTCGGCGTCAAGATTATCATCAAGGCCATC
GCAACTGGGACAGACGAAAGGTTCGAGAGAAAGCGCATCCGAAGGCTCACCAATGCCCTTGACCGTGCAGCCAAT
ATGTTCCCTCATGTTCAGTCTCTTGCCACTCTTATGGACTATGAGGTCCACCCTAGCCACACATTCCTCGTGTTC
AAAGCATACGGCAAAACGCTCACCGAGGTCATGACCATGCAGCAATTACTTCCATTGCCTTCAAGCCAGATTAAA
GGGATAGCGTTCCAGATCCTATCAGCGTTGAGATTCCTTCACGGTGAAGATATCGCGCATACCGATATCAAGCCC
GACAATATTGTTCTTGTGGACGACGCTGTTGCGTCATACGAAGACTTCCAGAATGGAGAATTTGTAACTAAATAC
TTGCTCAAAAACATATCCGTCAAACTTGTAGACTACGACGACTTCACCGATCTCCATGCAATACCAAGACCTCGC
CATCTTGTTGGAACGTCAATTTACAGACCGCCCGAAGTCATCTTGAATATGCCTTGGAGCACGCCTGTGGATATA
TTCGCATTTGGCTGCACCATTGCAGAACTGTATCTCGGCCGTCCCTTGTTCCCGCATTCTACTGGTCCAAGTCAT
CAGTTGGCAATTATAGAGGAGAGGCTCGGGAGATTCCCTCATTCCTTCATTGACAGAGTCAACAGGGGGGGGTTT
AACGTCTTCAGACCTAACGGAGAAGTTGATTGTGCCGAACCCGTAGCACAGCATTTGGCAGTAGAGGAGAGGAAA
CATATATCTCTCTGCATCTTGCGTCCCAACTTACTTGATTTGCTCAAGCTTTGCCTTCATCACGACGACAAGAAG
CGATGCTCCGCAAAGGCCGCTTTGCAGCACAGATTCTTTAAGCGCCGATAA
Length 1026

Transcript

Sequence id CopciAB_379412.T0
Sequence >CopciAB_379412.T0
ATGCTCCCTGCTCACGAACTCAAGCGACTTATTGAGAGAAGATTCGAAGAAAGAGCATCTATTGAGAGTACTATT
AGTGCCAACTTTCATAAATGCCTTTTTAAAGGCTTTGACCATCGATTCGGCGTCAAGATTATCATCAAGGCCATC
GCAACTGGGACAGACGAAAGGTTCGAGAGAAAGCGCATCCGAAGGCTCACCAATGCCCTTGACCGTGCAGCCAAT
ATGTTCCCTCATGTTCAGTCTCTTGCCACTCTTATGGACTATGAGGTCCACCCTAGCCACACATTCCTCGTGTTC
AAAGCATACGGCAAAACGCTCACCGAGGTCATGACCATGCAGCAATTACTTCCATTGCCTTCAAGCCAGATTAAA
GGGATAGCGTTCCAGATCCTATCAGCGTTGAGATTCCTTCACGGTGAAGATATCGCGCATACCGATATCAAGCCC
GACAATATTGTTCTTGTGGACGACGCTGTTGCGTCATACGAAGACTTCCAGAATGGAGAATTTGTAACTAAATAC
TTGCTCAAAAACATATCCGTCAAACTTGTAGACTACGACGACTTCACCGATCTCCATGCAATACCAAGACCTCGC
CATCTTGTTGGAACGTCAATTTACAGACCGCCCGAAGTCATCTTGAATATGCCTTGGAGCACGCCTGTGGATATA
TTCGCATTTGGCTGCACCATTGCAGAACTGTATCTCGGCCGTCCCTTGTTCCCGCATTCTACTGGTCCAAGTCAT
CAGTTGGCAATTATAGAGGAGAGGCTCGGGAGATTCCCTCATTCCTTCATTGACAGAGTCAACAGGGGGGGGTTT
AACGTCTTCAGACCTAACGGAGAAGTTGATTGTGCCGAACCCGTAGCACAGCATTTGGCAGTAGAGGAGAGGAAA
CATATATCTCTCTGCATCTTGCGTCCCAACTTACTTGATTTGCTCAAGCTTTGCCTTCATCACGACGACAAGAAG
CGATGCTCCGCAAAGGCCGCTTTGCAGCACAGATTCTTTAAGCGCCGATAA
Length 1026

Gene

Sequence id CopciAB_379412.T0
Sequence >CopciAB_379412.T0
ATGCTCCCTGCTCACGAACTCAAGCGACTTATTGAGAGAAGATTCGAAGAAAGAGGTTTGTCCTTTTTGTATGAC
TTGTTGTCGTATACTAAAACTGACGAGCTTCAGCATCTATTGAGAGTACTATTAGTGCCAACTTTCATAAATGCC
TTTTTAAAGGCTTTGACCATCGATTCGGCGTCAAGATTATCATCAAGGCCATCGCAACTGGGACAGACGAAAGGT
TCGAGAGAAAGCGCATCCGAAGGCTCACCAATGCCCTTGACCGTGCAGCCAATATGTTCCCTCATGTTCAGTAAG
TGTCGTTGTGTTACTCGTCCATCCAGACTCCTAAACGACTACAGGTCTCTTGCCACTCTTATGGACTATGAGGTC
CACCCTAGCCACACATTCCTCGTGTTCAAAGCATACGGCAAAACGCTCACCGAGGTCATGACCATGCAGCAATTA
CTTCCATTGCCTTCAAGCCAGATTAAAGGGATAGCGTTCCAGATCCTATCAGCGTTGAGATGTAAGACTCGACAA
TTTTCTGCTCTGTTCCTGTTCCTCATGTCATGTCCCCTAGTCCTTCACGGTGAAGATATCGCGCATACCGATATC
AAGCCCGACAATATTGTTCTTGTGGACGACGCTGTTGCGTCATACGAAGACTTCCAGAATGGAGAATTTGTAACT
AAAGTGGGTAGTGAGCTATCGGGTCCAGTACACGGCTAACTCAATTACTTGCAGTACTTGCTCAAAAACATATCC
GTCAAACTTGTAGACTACGACGACTTCACCGATCTCCATGCAATACCAAGACCTCGCCATCTTGTTGGAACGTCA
ATTTACAGACCGCCCGAAGTCATCTTGAGTCCGTCATTTCGAGATCATACATCCGACTCATTCTCACTTCAAAGC
CACCAGATATGCCTTGGAGCACGCCTGTGGATATATTCGCATTTGGCTGCACCATTGCAGAACTGTATCTCGGCC
GTCCCTTGTTCCCGCATTCTACTGGTCCAAGTCATCAGTTGGCAATTATAGAGGAGAGGCTCGGGAGATTCCCTC
ATTCCTTCATTGACAGAGTCAACAGGGGGGGGTTTAACGTCTTCAGACCTAACGGAGAAGTTGATTGTGCCGAAC
CCGTAGCACAGCATTTGGCAGTAGAGGAGAGGAAACATATATCTGTGAGTTTAGCTTGACACCCCTTTCTGAATA
GGTTCTGACTGTACTAGCTCTGCATCTTGCGTCCCAACTTACTTGATTTGCTCAAGCTTTGCCTTCATCACGACG
ACAAGAAGCGATGCTCCGCAAAGGCCGCTTTGCAGCACAGATTCTTTAAGCGCCGATAA
Length 1334