CopciAB_398785
Coprinopsis cinerea A43mutB43mut pab1-1 #326

General data

Systematic name CopciAB_398785 Strain Coprinopsis cinerea Okayama 7
Standard name - Synonyms 398785
Uniprot id Functional description spliceosomal complex assembly
Location scaffold_1:4026465..4028021 Strand -
Gene length (nt) 1557 Transcript length (nt) 1380
CDS length (nt) 1194 Protein length (aa) 397

Reciprocal best hits in model fungi

Strain name Gene / Protein name

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
Agrocybe aegerita Agrae_CAA7267219 40.3 1.174E-83 282

Expression

Name Summary Attribution Assay type
Carbon metabolism Transcriptional changes along alternative morphogenetic paths of C. cinerea Xie et al. 2020 RNA-Seq
Sample Mean cpm SD cpm Se of mean
sclerotia 1.3297 0.4827 0.2787
oidia 4.3062 1.2268 0.7083
vegetative_mycelium 22.6337 3.0032 1.7339
primordia 0.094 0.1075 0.0621
hyphal_knot 2.5906 0.1372 0.0792
young_fruiting_body 4.2714 1.5217 0.8786
Complex carbon sources 1 (long incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control - glucose 2.822 1.2358 0.7135
Wheat bran 11.8207 5.2196 3.0135
Horse manure 10.6513 4.1149 2.3758
Oak leaves 20.5042 21.0684 12.1639
Hay 8.5379 3.493 2.0167
Corn stalk 12.4819 6.5253 3.7674
Pectine 8.9713 1.1786 0.6805
Microcrystalline cellulose 40.1198 27.7085 15.9975
Xylose 12.6457 4.5917 2.651
Cellobiose 3.6441 1.0384 0.5995
Lignin 2.6896 2.1616 1.248
Apple peels 7.6106 1.1718 0.6766
Coprinopsis challenged with bacteria Transcriptional response to Bacillus subtilis and Escherichia coli. Kombrink et al. 2018 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control 6.2295 0.7061 0.4077
Bsubtilis 7.6472 2.1669 1.2511
Ecoli 6.1344 0.398 0.2298
Early development 1 Time series expression profiling of basidiospore and oidium germination Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
BS 0h 0.0516 0.0893 0.0516
BS 4h 0 0 0
BS 8h 0 0 0
BS 12h 0.0704 0.1219 0.0704
Oidia 0 h 0.6489 0.3655 0.211
Oidia 18 h 0.0553 0.0957 0.0553
Sclerotia 0.5684 0.591 0.3412
Early development 2 Time series expression profiling of mycelial growth, light induction and fruiting body initiation. Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
DM 12h 2.4456 0.7698 0.4444
DM 36h 8.7615 0.9195 0.5309
DM 60h 12.345 1.2967 0.7486
DM 84h 12.8373 2.0823 1.2022
DM 108h 15.7994 0.6505 0.3756
DM 132h 11.6828 3.7088 2.1413
DM 156hAE 3.1505 0.5548 0.3203
ELI1hAE 13.9159 5.4359 3.1384
ELI2hAE 13.3475 3.7617 2.1718
LI2hAE 12.7202 2.7949 1.6136
LI6hAE 7.267 2.4596 1.42
LI12hAE 5.9342 2.8866 1.6666
LI18hAE 3.2109 0.3463 0.1999
LI 24hAE 2.9046 0.5993 0.346
DM 156hAM 12.0557 5.4201 3.1293
ELI1hAM 32.9281 7.1717 4.1406
ELI2hAM 33.705 4.0979 2.3659
LI2hAM 30.5805 9.7387 5.6226
LI6hAM 13.2812 5.0262 2.9019
LI12hAM 8.6528 3.9789 2.2972
LI18hAM 5.1765 7.3582 4.2482
LI 24hAM 1.15 1.1303 0.6526
LI 24hHK 8.2401 4.5003 2.5982
L/D 6h 1.6791 1.0755 0.6209
L/D 12h 1.7647 0.7897 0.456
L/D 18h 1.2829 0.3224 0.1861
L/D 24h 0.5681 0.399 0.2303
Fruiting body development RNA-Seq analysis of fruiting body development Krizsan et al. 2019 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Vegetative mycelium 0.4295 0.2966 0.1712
Hyphal knots 0.8456 0.2007 0.1159
Primordium 1 0.3534 0.1177 0.068
Primordium 2 0.3658 0.0978 0.0565
Young Fruiting body cap 0.0341 0.059 0.0341
Younf fruiting body gill 1.5813 2.6605 1.5361
Young fruiting body stipe 0.0428 0.0406 0.0234
Mature fruiting body cap_gill 0.0383 0.0663 0.0383
Mature fruiting body stipe 0.0415 0.0719 0.0415
Nitrogen sources (12h incubation) Expression profiling on diverse nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Complete medium - control 5.4699 1.4315 0.8265
NH4NO3 4.3742 0.7144 0.4125
Proline 9.1278 0.7104 0.4102
Tryptophan 3.611 1.4438 0.8336
Isoleucin 4.5007 0.4107 0.2371
Arginine 21.6761 5.4221 3.1304
Metionine 4.7383 0.2705 0.1562
NaNO3 11.4178 2.222 1.2829
Plant biomass (12h incubation) Expression profiling on diverse plant biomasses as carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 5.4699 1.4315 0.8265
Citrus peel 3.4182 1.0704 0.618
Poplar leaves 2.806 1.1826 0.6828
Typha leaves 2.239 0.9459 0.5461
Overwintered Salix leaves 3.0464 0.7755 0.4477
Reed flowering 1.605 0.1765 0.1019
Tigernut 3.4585 1.3209 0.7626
Energy cane 3.9007 0.5435 0.3138
Guar gum 6.1545 1.2418 0.717
Apple peels 10.4803 0.8836 0.5101
Cellobiose 17.4944 3.7105 2.1422
Corn stalk 7.8804 0.9747 0.5627
Horse manure 7.1124 1.0639 0.6142
Lignin 10.6046 7.0447 4.0672
Microcrystalline cellulose 14.8875 3.9615 2.2872
Oak leaves 6.5007 1.3088 0.7556
Pectin esterified 8.2294 1.9003 1.0971
Poplar sawdust 9.074 1.5704 0.9067
Wheat bran 9.2933 2.5627 1.4796
Chlamydomonas reinhardtii 5.0634 0.6298 0.3636
Vertatryl alcohol 5.1283 1.4985 0.8651
Furfural 1.2015 0.7489 0.4324
Autoclaved mycelium 6.9671 2.4311 1.4036
Simple and complex carbon and nitrogen sources Expression profiling on diverse complex carbon and nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 1.6072 0.5982 0.3454
Ribose 3.8555 2.5345 1.4633
Mannose 3.4269 0.3137 0.2218
Fructose 5.1902 2.9145 1.6827
Arabinose 2.5401 0.7736 0.4466
Xylose 3.2181 1.6669 0.9624
Galacturonic acid 4.1245 3.4031 1.9648
Rhamnogalacturonan 3.7853 0.672 0.388
Pectin esterified 5.337 0.5438 0.314
Polygalacturonic acid 7.6375 3.7583 2.1699
Sodium acetate 3.9157 2.097 1.2107
No nitrogen 4.1482 1.4895 0.86
BSA 6.2115 2.8183 1.6271
Glutamine 3.9047 0.9029 0.5213
No phosphate 3.0067 0.4967 0.2868
No carbon 3.8056 0.604 0.4271
No sulphur 1.7282 0.1892 0.1093
Simple and complex carbon sources (12h incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 5.4699 1.4315 0.8265
Amylose 7.4776 0.2197 0.1269
Fucose 7.8985 0.5879 0.3394
Galactose 11.4445 3.0598 1.7666
Lactose 10.8404 1.9101 1.1028
Maltose 7.8659 1.7259 0.9965
Mannitol 8.321 1.6911 0.9763
Rhamnose 7.4723 0.9927 0.5731
Sorbitol 11.9409 3.4246 1.9772
Trehalose 8.486 2.2148 1.2787
Glycerol 5.7419 1.0536 0.6083
Glucuronic acid 10.4232 2.8349 1.6367
Arabinan 5.7195 2.0549 1.1864
Galactan 3.3368 0.3735 0.2156
Galactomannan 5.4595 1.7207 0.9934
Glucan 6.5163 2.1655 1.2503
Xylan 3.7396 1.0555 0.6094
Xyloglucan 3.7744 1.8453 1.0654
Arabinogalactan 6.3118 0.2599 0.15
Pectin 2.5199 0.7763 0.4482
Rhamnogalacturonan 0.8928 0.1808 0.1044
Polygalacturonic acid 10.6632 4.1934 2.421
Mannan 4.2668 1.7968 1.0374
Amylopectin 4.6782 0.9336 0.539
Inulin 11.0523 0.9512 0.5492
BSA 3.3414 0.7789 0.4497
Starvation induced by water agar transfer Expression profiling on starvation induced by transfer to water agar Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Control 12.345 1.2967 0.7486
2h WAT 9.129 3.337 1.9266
4h WAT 6.8254 1.6958 0.9791
8h WAT 4.6073 0.8697 0.5021
16h WAT 4.8048 0.1057 0.061
24h WAT 1.3684 0.6702 0.387
WAT hyphal knot -30h 6.6366 2.1874 1.2629
WAT hyphal knot -22h 3.5403 1.2445 0.7185
WAT hyphal knot -15h 4.1502 1.2649 0.7303
WAT hyphal knot -7.5h 4.1817 0.3553 0.2052
WAT hyphal knot 3.5028 0.3139 0.1812
WAT hyphal knot +7.5h 1.5257 0.1728 0.0998
Straw time series Time series expression profiling on straw as a carbon source Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 13.2561 2.906 1.6778
Straw 3h 12.6807 6.5559 3.785
Straw 6h 7.2897 2.2204 1.2819
Straw 12h 8.1619 2.6426 1.5257
Straw 24h 8.0556 1.4241 0.8222
Stress conditions 1 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 2.3217 1.3523 0.7808
Frost (-20C, 30min) 11.5056 1.689 0.9751
Heat shock (47C, 2h) 3.0886 1.5208 0.878
High CO2 16.8461 4.0535 2.3403
Drought (4% agar, 12h) 4.4785 0.7931 0.4579
Oxidative (1mM H2O2, 3h) 4.4894 0.6042 0.3489
Acidic (pH4, 3h) 1.4271 0.3297 0.1904
Alkaline (pH9, 3h) 3.4027 0.2644 0.1527
Osmotic (sorbitol 2h) 3.5658 1.2077 0.6973
CongoRed (3h) 3.3417 2.084 1.2032
Cobalt chloride control 4.8366 2.2619 1.3059
Cobalt chloride 2mM 7.0174 2.014 1.1628
Stress conditions 2 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 2.0951 0.5541 0.3199
Cold stimulation 17.2173 8.2549 4.766
Scratched surface 10.545 0.6584 0.3801
Ca2+, 200mM, 24h 5.8672 1.8268 1.0547
Cu2+, 2mM, 6h 9.1608 4.6041 2.6582
Voriconazole 3.3813 0.8437 0.4871
Trichoderma interaction, early 9.6542 3.9468 2.2787
Trichoderma interaction 60h 3.6428 6.006 3.4676
Cobalt chloride 2mM repeat 2.8331 0.6413 0.3703
Hypoxia 6.995 0.2423 0.1399
Hypoxia control 7.5196 1.1685 0.6746
Protoplastation control 3.376 0.4713 0.3332
Protoplastation 3.5h 5.5523 4.5623 3.226
Protoplastation 1.5h 15.8889 19.7503 13.9656

General data

Systematic name -
Protein id CopciAB_398785.T0
Description spliceosomal complex assembly

Annotation summary

0 100 200 300 397

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
Pfam PF00069 Protein kinase domain IPR000719 265 386

SignalP

Prediction Start End Score
No records

Transmembrane domains

Domain n Start End Length
No records

InterPro

Accession Description
IPR011009 Protein kinase-like domain superfamily
IPR000719 Protein kinase domain

GO

Go id Term Ontology
GO:0004672 protein kinase activity MF
GO:0005524 ATP binding MF
GO:0006468 protein phosphorylation BP

KEGG

KEGG Orthology
K08832

EggNOG

COG category Description
S spliceosomal complex assembly

CAZy

Class Family Subfamily
No records

Transcription factor

Group
No records

Conservation of CopciAB_398785 across fungi.

Arrow shows the origin of gene family containing CopciAB_398785.

Protein

Sequence id CopciAB_398785.T0
Sequence >CopciAB_398785.T0
MSIVNWNYVPKPPDPEPVSDTFPEEPLDLPVSLGGGYYSGQLGTTVSSNSYLIVRKLGYGPRSSTWLVKESGRAQ
YHALKVFKASASNQQEADRFYTLVRAMSAMTIDPNPRFMGYFWEESSHGRHLCFLMAPHCGLSIEDIRQANTDGR
LPVHTTQYILSAVADTLLELHAKGKNIMHGSIAAENIVFGASSHPQHLDPLLTKPEIISVKGTAVVRSQPIPARN
PQVADSMETMALNWRLLLTEYKYAQKGLALTPEPEHDYGFAPETLLSTPSCSPKTDIWMLGVMLFKLLTGRALFT
PTGTAAERLAEMCEVLEAQIPESWLHDKNLKDYSPGTRGLQTLKGSLEAALPQDQAESASSILMSCLCLDPATRI
SAADLVAHEWIRAVPFCDCFEV
Length 397

Coding

Sequence id CopciAB_398785.T0
Sequence >CopciAB_398785.T0
ATGTCAATCGTCAATTGGAACTATGTCCCCAAGCCACCTGATCCAGAACCGGTCTCTGATACCTTCCCTGAAGAA
CCCCTCGACCTCCCTGTCTCCCTCGGTGGAGGATACTACTCCGGACAACTAGGCACTACCGTCTCCAGCAACAGT
TACCTCATCGTCCGAAAACTTGGCTATGGTCCTCGATCCTCAACATGGCTCGTCAAAGAGAGTGGACGAGCGCAG
TATCACGCCCTCAAAGTCTTCAAAGCGTCAGCTTCTAATCAACAGGAGGCGGACCGCTTCTACACCCTGGTCCGT
GCAATGTCAGCAATGACGATCGACCCAAACCCCCGTTTCATGGGTTATTTCTGGGAGGAGAGCTCGCATGGACGC
CATTTGTGCTTTCTCATGGCGCCTCACTGTGGGCTATCGATAGAGGACATCAGGCAAGCGAATACAGACGGGCGC
TTGCCTGTGCACACCACACAGTATATTCTCAGTGCCGTAGCCGATACACTCCTCGAGCTGCATGCCAAAGGAAAG
AACATCATGCATGGGTCGATAGCAGCAGAGAACATCGTTTTTGGCGCCTCGTCACACCCTCAACATCTAGATCCT
CTCCTTACCAAACCCGAGATTATATCAGTCAAAGGCACCGCAGTTGTGAGGTCTCAACCCATACCCGCGAGGAAC
CCCCAGGTGGCAGACAGCATGGAGACCATGGCCCTTAATTGGAGGCTCCTTTTAACGGAGTACAAATATGCCCAG
AAGGGTCTCGCACTTACCCCAGAGCCTGAACATGATTACGGATTTGCACCAGAGACGTTGCTATCCACTCCTTCA
TGTTCACCCAAGACGGACATTTGGATGCTAGGTGTCATGCTTTTCAAGCTTTTAACAGGTCGAGCCCTCTTTACG
CCAACAGGGACAGCCGCAGAGCGACTTGCAGAAATGTGCGAGGTTCTCGAAGCTCAGATTCCAGAGTCATGGCTT
CACGACAAGAACCTGAAGGATTACAGTCCTGGGACACGAGGCCTTCAGACCCTCAAAGGTAGTCTCGAGGCTGCT
CTACCACAAGATCAAGCAGAGAGTGCGTCATCTATTCTGATGAGCTGTCTCTGTCTCGATCCAGCGACACGTATC
TCAGCGGCCGATCTTGTCGCTCATGAATGGATTCGCGCGGTTCCCTTTTGCGATTGCTTCGAGGTTTGA
Length 1194

Transcript

Sequence id CopciAB_398785.T0
Sequence >CopciAB_398785.T0
GGTTCAATCTCGACAGACACCTCCATAGCCTAACACCTATTTTCCTCTCCCTTCCACACTCACTGCCATAGACCT
TCCACAGATAGATCGCGACCATGTCAATCGTCAATTGGAACTATGTCCCCAAGCCACCTGATCCAGAACCGGTCT
CTGATACCTTCCCTGAAGAACCCCTCGACCTCCCTGTCTCCCTCGGTGGAGGATACTACTCCGGACAACTAGGCA
CTACCGTCTCCAGCAACAGTTACCTCATCGTCCGAAAACTTGGCTATGGTCCTCGATCCTCAACATGGCTCGTCA
AAGAGAGTGGACGAGCGCAGTATCACGCCCTCAAAGTCTTCAAAGCGTCAGCTTCTAATCAACAGGAGGCGGACC
GCTTCTACACCCTGGTCCGTGCAATGTCAGCAATGACGATCGACCCAAACCCCCGTTTCATGGGTTATTTCTGGG
AGGAGAGCTCGCATGGACGCCATTTGTGCTTTCTCATGGCGCCTCACTGTGGGCTATCGATAGAGGACATCAGGC
AAGCGAATACAGACGGGCGCTTGCCTGTGCACACCACACAGTATATTCTCAGTGCCGTAGCCGATACACTCCTCG
AGCTGCATGCCAAAGGAAAGAACATCATGCATGGGTCGATAGCAGCAGAGAACATCGTTTTTGGCGCCTCGTCAC
ACCCTCAACATCTAGATCCTCTCCTTACCAAACCCGAGATTATATCAGTCAAAGGCACCGCAGTTGTGAGGTCTC
AACCCATACCCGCGAGGAACCCCCAGGTGGCAGACAGCATGGAGACCATGGCCCTTAATTGGAGGCTCCTTTTAA
CGGAGTACAAATATGCCCAGAAGGGTCTCGCACTTACCCCAGAGCCTGAACATGATTACGGATTTGCACCAGAGA
CGTTGCTATCCACTCCTTCATGTTCACCCAAGACGGACATTTGGATGCTAGGTGTCATGCTTTTCAAGCTTTTAA
CAGGTCGAGCCCTCTTTACGCCAACAGGGACAGCCGCAGAGCGACTTGCAGAAATGTGCGAGGTTCTCGAAGCTC
AGATTCCAGAGTCATGGCTTCACGACAAGAACCTGAAGGATTACAGTCCTGGGACACGAGGCCTTCAGACCCTCA
AAGGTAGTCTCGAGGCTGCTCTACCACAAGATCAAGCAGAGAGTGCGTCATCTATTCTGATGAGCTGTCTCTGTC
TCGATCCAGCGACACGTATCTCAGCGGCCGATCTTGTCGCTCATGAATGGATTCGCGCGGTTCCCTTTTGCGATT
GCTTCGAGGTTTGACCTGTCTTTTGAGGACTACTTCCATAGCGCACAGCTCTAACTGCAATTATACGCCCTTAAG
GCAATAGTAATGCCCCCTAGTGGTTTAGTG
Length 1380

Gene

Sequence id CopciAB_398785.T0
Sequence >CopciAB_398785.T0
GGTTCAATCTCGACAGACACCTCCATAGCCTAACACCTATTTTCCTCTCCCTTCCACACTCACTGCCATAGACCT
TCCACAGATAGATCGCGACCATGTCAATCGTCAATTGGAACTATGTCCCCAAGCCACCTGATCCAGAACCGGTCT
CTGATACCTTCCCTGAAGAACCCCTCGACCTCCCTGTCTCCCTCGGTGGAGGATACTACTCCGGACAACTAGGCA
CTACCGTCTCCAGCAACAGTTACCTCATCGTCCGAAAACTTGGCTATGGTCCTCGATCCTCAACATGGCTCGTCA
AAGAGAGTGGACGAGCGCAGTATCACGCCCTCAAAGTCTTCAAAGCGTCAGCTTCTAATCAACAGGAGGCGGACC
GCTTCTACACCCTGGTCCGTGCAATGTCAGCAATGACGATCGACCCAAACCCCCGTTTCATGGGTTATTTCTGGG
AGGAGAGCTCGCATGGACGCCATTTGTGCTTTCTCATGGCGCCTCACTGTGGGCTATCGATAGAGGACATCAGGC
AAGCGAATACAGACGGGCGCTTGCCTGTGCACACCACACAGTATATTCTCAGTGCCGTAGCCGATACACTCCTCG
AGCTGCATGCCAAAGGAAAGAACATCATGCATGGGTGTAAGTCCCCACCATCTCTTCTATTACATATTAGTAGGG
TCAGGGCCTAACATTCTTAAATCAGCGATAGCAGCAGAGAACATCGTTTTTGGCGCCTCGTCACACCCTCAACAT
CTAGATCCTCTCCTTACCAAACCCGAGATTATATCAGTCAAAGGCACCGCAGTTGTGAGGTCTCAACCCATACCC
GCGAGGAACCCCCAGGTGGCAGACAGCATGGAGACCATGGCCCTTAATTGGAGGCTCCTTTTAACGGAGTACAAA
TATGGTATCATAACCAGCGCTTTTCTCCGTTTTCAGCGTCTTGTTGATTGTGTAATTACAGCCCAGAAGGGTCTC
GCACTTACCCCAGAGCCTGAACATGATTACGGATTTGCACCAGAGACGTTGCTATCCACTCCTTCATGTTCACCC
AAGACGGACATTTGGATGCTAGGTGTCATGGTAGGCCGTCACATCCGCTCTCTGTCGCATATCCGACTTACCAAT
CTTTGAAAAAGCTTTTCAAGCTTTTAACAGGTCGAGCCCTCTTTACGCCAACAGGGACAGCCGCAGAGCGACTTG
CAGAAATGTGCGAGGTTCTCGAAGCTCAGATTCCAGAGTCATGGCTTCACGACAAGAACCTGAAGGATTACAGTC
CTGGGACACGAGGCCTTCAGACCCTCAAAGGTAGTCTCGAGGCTGCTCTACCACAAGATCAAGCAGAGAGTGCGT
CATCTATTCTGATGAGCTGTCTCTGTCTCGATCCAGCGACACGTATCTCAGCGGCCGATCTTGTCGCTCATGAAT
GGATTCGCGCGGTTCCCTTTTGCGATTGCTTCGAGGTTTGACCTGTCTTTTGAGGACTACTTCCATAGCGCACAG
CTCTAACTGCAATTATACGCCCTTAAGGCAATAGTAATGCCCCCTAGTGGTTTAGTG
Length 1557