CopciAB_402167
Coprinopsis cinerea A43mutB43mut pab1-1 #326

General data

Systematic name CopciAB_402167 Strain Coprinopsis cinerea Okayama 7
Standard name - Synonyms 402167
Uniprot id Functional description Protein kinase domain
Location scaffold_10:1580109..1581410 Strand -
Gene length (nt) 1302 Transcript length (nt) 1222
CDS length (nt) 861 Protein length (aa) 286

Reciprocal best hits in model fungi

Strain name Gene / Protein name

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
Agrocybe aegerita Agrae_CAA7260740 39 5.387E-49 176
Flammulina velutipes Flave_chr11AA00495 35.5 1.445E-19 89

Expression

Name Summary Attribution Assay type
Carbon metabolism Transcriptional changes along alternative morphogenetic paths of C. cinerea Xie et al. 2020 RNA-Seq
Sample Mean cpm SD cpm Se of mean
sclerotia 35.7129 9.7306 5.618
oidia 16.0739 7.4556 4.3045
vegetative_mycelium 4.846 1.5885 0.9171
primordia 0.5729 0.2133 0.1231
hyphal_knot 39.0885 6.8047 3.9287
young_fruiting_body 0.4403 0.1449 0.0837
Complex carbon sources 1 (long incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control - glucose 5.2826 2.7405 1.5822
Wheat bran 59.4985 8.4981 4.9064
Horse manure 174.0942 33.9779 19.6172
Oak leaves 64.0025 65.2918 37.6963
Hay 119.9814 55.6559 32.133
Corn stalk 78.0168 25.8839 14.9441
Pectine 9.7263 0.626 0.3614
Microcrystalline cellulose 48.8713 3.4306 1.9807
Xylose 12.7636 7.697 4.4439
Cellobiose 7.7117 4.6841 2.7044
Lignin 40.1611 16.0371 9.2591
Apple peels 17.2462 5.703 3.2926
Coprinopsis challenged with bacteria Transcriptional response to Bacillus subtilis and Escherichia coli. Kombrink et al. 2018 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control 10.5115 2.0723 1.1964
Bsubtilis 10.3068 0.9626 0.5558
Ecoli 1.8848 0.2864 0.1654
Early development 1 Time series expression profiling of basidiospore and oidium germination Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
BS 0h 0.5996 0.5529 0.3192
BS 4h 0.4158 0.5106 0.2948
BS 8h 0.4266 0.1901 0.1098
BS 12h 0.1202 0.1086 0.0627
Oidia 0 h 1.1977 0.4163 0.2403
Oidia 18 h 0.3699 0.1287 0.0743
Sclerotia 35.6992 10.2325 5.9077
Early development 2 Time series expression profiling of mycelial growth, light induction and fruiting body initiation. Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
DM 12h 3.078 1.7701 1.022
DM 36h 8.3101 1.6026 0.9253
DM 60h 7.1486 7.8011 4.504
DM 84h 31.3379 17.7359 10.2399
DM 108h 31.5321 4.4096 2.5459
DM 132h 22.4203 14.1595 8.175
DM 156hAE 152.3725 44.3513 25.6062
ELI1hAE 68.407 39.3215 22.7023
ELI2hAE 67.7529 11.042 6.3751
LI2hAE 60.5721 22.7845 13.1547
LI6hAE 65.2694 4.2498 2.4536
LI12hAE 64.8313 34.1895 19.7393
LI18hAE 53.8497 23.3138 13.4602
LI 24hAE 97.9288 43.6705 25.2131
DM 156hAM 11.6954 3.5268 2.0362
ELI1hAM 1.8159 0.6254 0.3611
ELI2hAM 1.7758 1.4193 0.8195
LI2hAM 2.477 0.7453 0.4303
LI6hAM 13.5182 6.5382 3.7749
LI12hAM 28.3553 6.9193 3.9949
LI18hAM 32.1433 3.4109 1.9693
LI 24hAM 24.1902 8.4238 4.8635
LI 24hHK 15.9851 5.3628 3.0962
L/D 6h 34.8021 20.4246 11.7921
L/D 12h 46.8801 17.7222 10.2319
L/D 18h 48.9569 36.6864 21.1809
L/D 24h 23.7664 6.8695 3.9661
Fruiting body development RNA-Seq analysis of fruiting body development Krizsan et al. 2019 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Vegetative mycelium 48.3657 32.5265 18.7792
Hyphal knots 16.0179 8.1415 4.7005
Primordium 1 8.2319 4.4625 2.5764
Primordium 2 6.3317 3.3012 1.9059
Young Fruiting body cap 0.4045 0.447 0.2581
Younf fruiting body gill 0.3903 0.245 0.1415
Young fruiting body stipe 0.8235 1.0662 0.6156
Mature fruiting body cap_gill 0.4655 0.3948 0.228
Mature fruiting body stipe 0.9982 0.1213 0.07
Nitrogen sources (12h incubation) Expression profiling on diverse nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Complete medium - control 119.7949 54.3306 31.3678
NH4NO3 12.0731 8.7837 5.0713
Proline 7.4685 5.5783 3.2206
Tryptophan 23.657 18.4451 10.6493
Isoleucin 3.507 1.4529 0.8389
Arginine 9.6484 3.9771 2.2962
Metionine 13.7707 4.0629 2.3457
NaNO3 13.8924 3.407 1.967
Plant biomass (12h incubation) Expression profiling on diverse plant biomasses as carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 119.7949 54.3306 31.3678
Citrus peel 15.5692 13.9616 8.0607
Poplar leaves 109.1446 39.9577 23.0696
Typha leaves 113.0806 95.0725 54.8901
Overwintered Salix leaves 105.2226 40.2892 23.261
Reed flowering 40.7516 27.713 16.0001
Tigernut 15.3939 1.4576 0.8416
Energy cane 176.5007 75.5084 43.5948
Guar gum 70.3473 42.5697 24.5776
Apple peels 41.2055 7.6635 4.4245
Cellobiose 5.8376 1.1856 0.6845
Corn stalk 110.0147 36.9314 21.3224
Horse manure 196.2369 118.8126 68.5965
Lignin 9.2718 8.6815 5.0123
Microcrystalline cellulose 37.5907 29.4097 16.9797
Oak leaves 269.9931 63.5114 36.6683
Pectin esterified 56.3381 72.0195 41.5805
Poplar sawdust 169.2404 70.1179 40.4826
Wheat bran 117.518 49.0785 28.3355
Chlamydomonas reinhardtii 168.9347 58.7544 33.9218
Vertatryl alcohol 0.9242 0.2324 0.1342
Furfural 11.2312 8.8956 5.1359
Autoclaved mycelium 34.2247 17.9282 10.3509
Simple and complex carbon and nitrogen sources Expression profiling on diverse complex carbon and nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 42.4806 10.4305 6.0221
Ribose 75.9163 15.4393 8.9139
Mannose 43.6294 12.4886 8.8308
Fructose 63.2813 27.2052 15.7069
Arabinose 91.9574 35.1122 20.272
Xylose 41.495 11.3132 6.5317
Galacturonic acid 91.4009 14.6687 8.469
Rhamnogalacturonan 75.6724 9.5833 5.5329
Pectin esterified 43.1075 13.2833 7.6691
Polygalacturonic acid 90.9755 25.884 14.9441
Sodium acetate 53.9283 4.847 2.7984
No nitrogen 29.1747 2.5106 1.4495
BSA 47.4061 10.7641 6.2146
Glutamine 45.0136 19.9833 11.5373
No phosphate 16.7898 2.0078 1.1592
No carbon 53.8019 0.1337 0.0946
No sulphur 19.9514 9.756 5.6326
Simple and complex carbon sources (12h incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 119.7949 54.3306 31.3678
Amylose 101.8649 22.8644 13.2008
Fucose 93.3153 23.8999 13.7986
Galactose 88.6647 3.6789 2.124
Lactose 50.2226 13.9286 8.0417
Maltose 81.9168 14.7991 8.5442
Mannitol 56.1445 13.7413 7.9336
Rhamnose 56.0305 8.5407 4.931
Sorbitol 53.8954 2.5647 1.4807
Trehalose 54.5521 23.8139 13.749
Glycerol 53.9623 27.6576 15.9681
Glucuronic acid 50.8977 14.9183 8.6131
Arabinan 87.3811 34.0101 19.6357
Galactan 45.8214 11.5895 6.6912
Galactomannan 92.8508 13.6693 7.892
Glucan 67.4019 27.413 15.8269
Xylan 113.4144 17.2162 9.9398
Xyloglucan 185.4831 41.9179 24.2013
Arabinogalactan 153.7014 19.8063 11.4352
Pectin 238.6438 121.2197 69.9862
Rhamnogalacturonan 183.8723 93.5455 54.0085
Polygalacturonic acid 51.3149 12.1625 7.022
Mannan 98.765 30.8724 17.8242
Amylopectin 62.4215 22.147 12.7866
Inulin 39.1962 9.588 5.5356
BSA 20.2194 5.1727 2.9865
Starvation induced by water agar transfer Expression profiling on starvation induced by transfer to water agar Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Control 7.1486 7.8011 4.504
2h WAT 20.3338 2.8302 1.634
4h WAT 28.5616 15.5729 8.991
8h WAT 10.6538 9.1709 5.2948
16h WAT 13.5019 6.0147 3.4726
24h WAT 9.2129 0.986 0.5693
WAT hyphal knot -30h 8.7412 4.5242 2.612
WAT hyphal knot -22h 28.0185 19.3842 11.1915
WAT hyphal knot -15h 47.0882 28.0763 16.2099
WAT hyphal knot -7.5h 76.8106 2.9817 1.7215
WAT hyphal knot 32.5218 16.8457 9.7259
WAT hyphal knot +7.5h 64.5262 18.9927 10.9655
Straw time series Time series expression profiling on straw as a carbon source Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 4.5359 2.3529 1.3585
Straw 3h 9.5205 6.5807 3.7994
Straw 6h 25.3008 19.8696 11.4717
Straw 12h 58.3296 9.8734 5.7004
Straw 24h 33.0244 39.6351 22.8833
Stress conditions 1 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 1.3332 1.018 0.5877
Frost (-20C, 30min) 9.8201 1.887 1.0894
Heat shock (47C, 2h) 1.0135 1.2045 0.6954
High CO2 8.6103 2.5822 1.4908
Drought (4% agar, 12h) 8.3458 1.8601 1.0739
Oxidative (1mM H2O2, 3h) 3.3619 1.6446 0.9495
Acidic (pH4, 3h) 1.2819 1.1364 0.6561
Alkaline (pH9, 3h) 4.2434 0.7446 0.4299
Osmotic (sorbitol 2h) 4.9801 3.0954 1.7871
CongoRed (3h) 5.6229 3.2947 1.9022
Cobalt chloride control 8.1174 2.1685 1.252
Cobalt chloride 2mM 2.5485 1.6483 0.9517
Stress conditions 2 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 12.5233 8.0409 4.6424
Cold stimulation 13.9742 13.1341 7.583
Scratched surface 3.1246 1.4307 0.826
Ca2+, 200mM, 24h 0.8521 0.6081 0.3511
Cu2+, 2mM, 6h 2.2208 0.4255 0.2457
Voriconazole 4.5556 1.9414 1.1209
Trichoderma interaction, early 10.5095 4.5222 2.6109
Trichoderma interaction 60h 14.1772 6.2093 3.585
Cobalt chloride 2mM repeat 31.0139 19.4189 11.2115
Hypoxia 10.1729 1.9174 1.107
Hypoxia control 14.0961 7.2615 4.1924
Protoplastation control 26.6305 0.9315 0.6587
Protoplastation 3.5h 14.7109 0.306 0.2164
Protoplastation 1.5h 16.6651 1.7493 1.237

General data

Systematic name -
Protein id CopciAB_402167.T0
Description Protein kinase domain

Annotation summary

0 100 200 286

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
Pfam PF00069 Protein kinase domain IPR000719 111 230

SignalP

Prediction Start End Score
No records

Transmembrane domains

Domain n Start End Length
No records

InterPro

Accession Description
IPR000719 Protein kinase domain
IPR011009 Protein kinase-like domain superfamily

GO

Go id Term Ontology
GO:0004672 protein kinase activity MF
GO:0005524 ATP binding MF
GO:0006468 protein phosphorylation BP

KEGG

KEGG Orthology
No records

EggNOG

COG category Description
T Protein kinase domain

CAZy

Class Family Subfamily
No records

Transcription factor

Group
No records

Conservation of CopciAB_402167 across fungi.

Arrow shows the origin of gene family containing CopciAB_402167.

Protein

Sequence id CopciAB_402167.T0
Sequence >CopciAB_402167.T0
MGKLILDQAASWSRSSLNSPHPPRVPNFLAVIWRDEDTGFIYASRLPGRQLNEFCEQDLDQVHVFIPPHHYQPHW
DPYISRYDIDVPQTDALLYLKTPRLVGYDGTPGIAQRVRHEICVLEQLRKNPHPNLCDYYGCAVDSTAGLVTGVY
MRKYHWSLSALLSGRIPFESQHYPRPTLHLETIAKGIVAGMRHLHAMGLAHNDISPSNIMIDEYGSPVIIDFDNC
SSFGQPCRPGTPGYTNFSKISDPRNDYHAFNCLLALLRQKFGLVHPHRSSQTLPTPMIAVN
Length 286

Coding

Sequence id CopciAB_402167.T0
Sequence >CopciAB_402167.T0
ATGGGCAAGCTGATCTTGGACCAGGCGGCTTCATGGAGTCGCAGCTCGCTCAACTCACCACATCCGCCACGAGTT
CCCAACTTCCTCGCCGTGATATGGAGGGACGAGGACACCGGATTTATTTATGCATCTCGACTACCCGGACGTCAG
CTGAACGAGTTCTGCGAGCAGGACTTGGATCAGGTCCACGTCTTCATCCCCCCACACCACTATCAGCCGCACTGG
GACCCCTACATCAGCCGGTACGACATCGACGTTCCCCAAACCGACGCCTTGCTATATTTGAAAACGCCTCGGCTT
GTCGGGTATGACGGAACACCGGGTATCGCGCAGAGGGTGCGGCATGAAATCTGCGTCCTCGAGCAGCTGAGGAAG
AACCCCCACCCCAATCTCTGCGATTACTACGGGTGTGCGGTTGATTCAACTGCGGGGTTAGTGACGGGAGTTTAC
ATGCGGAAGTACCACTGGTCGCTGAGTGCGTTGCTTTCGGGGCGTATCCCCTTCGAGTCGCAACATTATCCAAGA
CCCACACTCCATCTTGAGACCATAGCAAAAGGCATCGTGGCGGGTATGCGACACCTCCACGCCATGGGACTCGCA
CATAACGATATCAGCCCGAGCAATATCATGATTGATGAATACGGGAGCCCCGTCATCATCGATTTCGACAATTGC
TCTTCCTTCGGCCAGCCCTGTAGACCAGGGACACCGGGATATACCAACTTCTCCAAGATTTCCGATCCCCGTAAC
GACTATCACGCTTTCAACTGCCTCTTGGCCCTTCTCCGTCAGAAATTTGGACTTGTACATCCTCATCGCTCATCA
CAGACGTTGCCCACTCCAATGATCGCTGTAAATTAA
Length 861

Transcript

Sequence id CopciAB_402167.T0
Sequence >CopciAB_402167.T0
GCGCCTAGCCTTCTCTTGATTTCGCTAAACCTCACCTCACACATAGCCCTTCTACCTCCCGCCTGTTTTACTTCA
CTGCCACATACACAACGCCTGTCTTTGACACTCCGCTAGTCAGACGACACCACTGGACTCTCACACTTGACGACA
CAATCGCTCTGACTTCTGTATGACATGGGCAAGCTGATCTTGGACCAGGCGGCTTCATGGAGTCGCAGCTCGCTC
AACTCACCACATCCGCCACGAGTTCCCAACTTCCTCGCCGTGATATGGAGGGACGAGGACACCGGATTTATTTAT
GCATCTCGACTACCCGGACGTCAGCTGAACGAGTTCTGCGAGCAGGACTTGGATCAGGTCCACGTCTTCATCCCC
CCACACCACTATCAGCCGCACTGGGACCCCTACATCAGCCGGTACGACATCGACGTTCCCCAAACCGACGCCTTG
CTATATTTGAAAACGCCTCGGCTTGTCGGGTATGACGGAACACCGGGTATCGCGCAGAGGGTGCGGCATGAAATC
TGCGTCCTCGAGCAGCTGAGGAAGAACCCCCACCCCAATCTCTGCGATTACTACGGGTGTGCGGTTGATTCAACT
GCGGGGTTAGTGACGGGAGTTTACATGCGGAAGTACCACTGGTCGCTGAGTGCGTTGCTTTCGGGGCGTATCCCC
TTCGAGTCGCAACATTATCCAAGACCCACACTCCATCTTGAGACCATAGCAAAAGGCATCGTGGCGGGTATGCGA
CACCTCCACGCCATGGGACTCGCACATAACGATATCAGCCCGAGCAATATCATGATTGATGAATACGGGAGCCCC
GTCATCATCGATTTCGACAATTGCTCTTCCTTCGGCCAGCCCTGTAGACCAGGGACACCGGGATATACCAACTTC
TCCAAGATTTCCGATCCCCGTAACGACTATCACGCTTTCAACTGCCTCTTGGCCCTTCTCCGTCAGAAATTTGGA
CTTGTACATCCTCATCGCTCATCACAGACGTTGCCCACTCCAATGATCGCTGTAAATTAACCATTGATTATTTTC
CTTTGCATATTTCATCGCTTTCGCAGTTCCAACCTCTTGTTTTCTCGTTACTCGCTGTATATATCTTCTAACATA
CGTATCTGTATTATAGATCATGTTTGGCTCTAATCCTACTTGTACTATACCCGTCTTTGAGCAGAATAATAGCCC
GGGGTCGTAACATGGTCGTCTC
Length 1222

Gene

Sequence id CopciAB_402167.T0
Sequence >CopciAB_402167.T0
GCGCCTAGCCTTCTCTTGATTTCGCTAAACCTCACCTCACACATAGCCCTTCTACCTCCCGCCTGTTTTACTTCA
CTGCCACATACACAACGCCTGTCTTTGACACTCCGCTAGTCAGACGACACCACTGGACTCTCACACTTGACGACA
CAATCGCTCTGACTTCTGTATGACATGGGCAAGCTGATCTTGGACCAGGCGGCTTCATGGAGTCGCAGCTCGCTC
AACTCACCACATCCGCCACGAGTTCCCAACTTCCTCGCCGTGATATGGAGGGACGAGGACACCGGATTTATTTAT
GCATCTCGACTACCCGGACGTCAGCTGAACGAGTTCTGCGAGCAGGACTTGGATCAGGTCCACGTCTTCATCCCC
CCACACCACTATCAGCCGCACTGGGACCCCTACATCAGCCGGTACGACATCGACGTTCCCCAAACCGACGCCTTG
CTATATTTGAAAACGCCTCGGCTTGTCGGGTATGACGGAACACCGGGTATCGCGCAGAGGGTGCGGCATGAAATC
TGCGTCCTCGAGCAGCTGAGGAAGAACCCCCACCCCAATCTCTGCGATTACTACGGGTGTGCGGTTGATTCAACT
GCGGGGTTAGTGACGGGAGTTTACATGCGGAAGTACCACTGGTCGCTGAGTGCGTTGCTTTCGGGGCGTATCCCC
TTCGAGTGAGTGTTGGCATCTCCACCGTCTCTTATTCGGATGTCACAACTCAATCGTGTTTTGAATGTGTTTTGT
GCTATTTTAGGTCGCAACATTATCCAAGACCCACACTCCATCTTGAGACCATAGCAAAAGGCATCGTGGCGGGTA
TGCGACACCTCCACGCCATGGGACTCGCACATAACGATATCAGCCCGAGCAATATCATGATTGATGAATACGGGA
GCCCCGTCATCATCGATTTCGACAATTGCTCTTCCTTCGGCCAGCCCTGTAGACCAGGGACACCGGGATATACCA
ACTTCTCCAAGATTTCCGATCCCCGTAACGACTATCACGCTTTCAACTGCCTCTTGGCCCTTCTCCGTCAGAAAT
TTGGACTTGTACATCCTCATCGCTCATCACAGACGTTGCCCACTCCAATGATCGCTGTAAATTAACCATTGATTA
TTTTCCTTTGCATATTTCATCGCTTTCGCAGTTCCAACCTCTTGTTTTCTCGTTACTCGCTGTATATATCTTCTA
ACATACGTATCTGTATTATAGATCATGTTTGGCTCTAATCCTACTTGTACTATACCCGTCTTTGAGCAGAATAAT
AGCCCGGGGTCGTAACATGGTCGTCTC
Length 1302