CopciAB_407043
Coprinopsis cinerea A43mutB43mut pab1-1 #326

General data

Systematic name CopciAB_407043 Strain Coprinopsis cinerea Okayama 7
Standard name - Synonyms 407043
Uniprot id Functional description Other 1 protein kinase
Location scaffold_3:405537..406828 Strand +
Gene length (nt) 1292 Transcript length (nt) 1160
CDS length (nt) 1065 Protein length (aa) 354

Reciprocal best hits in model fungi

Strain name Gene / Protein name

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
0

Expression

Name Summary Attribution Assay type
Carbon metabolism Transcriptional changes along alternative morphogenetic paths of C. cinerea Xie et al. 2020 RNA-Seq
Sample Mean cpm SD cpm Se of mean
sclerotia 9.9594 1.2552 0.7247
oidia 3.0058 0.5257 0.3035
vegetative_mycelium 3.9477 0.4326 0.2498
primordia 2.9087 0.105 0.0606
hyphal_knot 3.1804 0.3945 0.2277
young_fruiting_body 2.1896 1.0614 0.6128
Complex carbon sources 1 (long incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control - glucose 2.1033 0.195 0.1126
Wheat bran 3.8964 1.1837 0.6834
Horse manure 2.3124 0.267 0.1542
Oak leaves 1.0718 0.345 0.1992
Hay 2.2847 0.0877 0.0506
Corn stalk 2.36 0.7551 0.436
Pectine 3.1137 0.3251 0.1877
Microcrystalline cellulose 3.5292 0.2115 0.1221
Xylose 2.5679 0.1081 0.0624
Cellobiose 2.6143 0.2231 0.1288
Lignin 3.3768 1.2193 0.7039
Apple peels 3.0982 0.4805 0.2774
Coprinopsis challenged with bacteria Transcriptional response to Bacillus subtilis and Escherichia coli. Kombrink et al. 2018 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control 2.2984 0.5495 0.3173
Bsubtilis 1.6243 0.5655 0.3265
Ecoli 2.7748 0.3265 0.1885
Early development 1 Time series expression profiling of basidiospore and oidium germination Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
BS 0h 32.4593 7.3618 4.2504
BS 4h 13.3178 1.7264 0.9967
BS 8h 5.4818 2.3562 1.3604
BS 12h 2.1461 0.3712 0.2143
Oidia 0 h 5.9485 2.9712 1.7155
Oidia 18 h 1.5773 0.4088 0.236
Sclerotia 0.855 0.5952 0.3436
Early development 2 Time series expression profiling of mycelial growth, light induction and fruiting body initiation. Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
DM 12h 0.9826 0.5773 0.3333
DM 36h 0.6496 0.3354 0.1937
DM 60h 0.9916 0.1734 0.1001
DM 84h 0.8694 0.064 0.0369
DM 108h 0.6926 0.1622 0.0936
DM 132h 1.1166 0.9507 0.5489
DM 156hAE 1.8328 0.4347 0.251
ELI1hAE 1.0924 0.8051 0.4648
ELI2hAE 1.6335 0.9521 0.5497
LI2hAE 0.9146 0.6946 0.401
LI6hAE 0.6551 0.3552 0.2051
LI12hAE 0.7888 0.8124 0.469
LI18hAE 1.7572 1.1864 0.685
LI 24hAE 1.925 0.1203 0.0695
DM 156hAM 0.7195 0.2983 0.1722
ELI1hAM 0.6537 0.4246 0.2451
ELI2hAM 0.6374 0.3019 0.1743
LI2hAM 0.7092 0.2755 0.159
LI6hAM 0.3537 0.4017 0.2319
LI12hAM 0.6789 0.5884 0.3397
LI18hAM 0.8076 0.6667 0.3849
LI 24hAM 0.5063 0.2094 0.1209
LI 24hHK 0.6883 0.2629 0.1518
L/D 6h 1.2865 0.5663 0.3269
L/D 12h 1.5271 0.9281 0.5359
L/D 18h 0.8459 0.5094 0.2941
L/D 24h 1.0176 0.1391 0.0803
Fruiting body development RNA-Seq analysis of fruiting body development Krizsan et al. 2019 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Vegetative mycelium 3.7111 1.2711 0.7339
Hyphal knots 1.5508 1.2802 0.7391
Primordium 1 1.1182 0.4167 0.2406
Primordium 2 1.1549 0.5089 0.2938
Young Fruiting body cap 1.9547 0.5069 0.2926
Younf fruiting body gill 1.6241 0.1706 0.0985
Young fruiting body stipe 0.8779 0.2735 0.1579
Mature fruiting body cap_gill 0.4807 0.0188 0.0109
Mature fruiting body stipe 0.4692 0.2762 0.1595
Nitrogen sources (12h incubation) Expression profiling on diverse nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Complete medium - control 1.4228 0.787 0.4543
NH4NO3 2.4717 0.2585 0.1493
Proline 1.6946 0.6594 0.3807
Tryptophan 1.1546 0.2116 0.1222
Isoleucin 1.3456 0.2994 0.1729
Arginine 1.4625 0.7442 0.4297
Metionine 1.6622 0.191 0.1103
NaNO3 1.3022 0.2289 0.1322
Plant biomass (12h incubation) Expression profiling on diverse plant biomasses as carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 1.4228 0.787 0.4543
Citrus peel 1.5499 0.4686 0.2706
Poplar leaves 1.6823 0.4314 0.2491
Typha leaves 1.544 0.1905 0.11
Overwintered Salix leaves 1.8367 0.082 0.0474
Reed flowering 1.8142 0.8057 0.4652
Tigernut 1.7444 0.4266 0.2463
Energy cane 1.9274 0.4893 0.2825
Guar gum 1.8849 0.5392 0.3113
Apple peels 2.0023 0.4141 0.2391
Cellobiose 1.8057 0.2288 0.1321
Corn stalk 1.582 0.0804 0.0464
Horse manure 2.1475 0.7353 0.4245
Lignin 1.4701 0.2553 0.1474
Microcrystalline cellulose 1.4247 0.2011 0.1161
Oak leaves 1.6146 0.8185 0.4726
Pectin esterified 1.9927 0.2583 0.1491
Poplar sawdust 1.3437 0.2911 0.1681
Wheat bran 1.9518 0.2774 0.1602
Chlamydomonas reinhardtii 2.0606 0.8661 0.5
Vertatryl alcohol 1.9935 0.0971 0.0561
Furfural 0.9693 0.3898 0.2251
Autoclaved mycelium 1.0975 0.052 0.03
Simple and complex carbon and nitrogen sources Expression profiling on diverse complex carbon and nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 2.242 0.5993 0.346
Ribose 1.8439 1.1547 0.6667
Mannose 2.0555 0.1689 0.1194
Fructose 2.47 0.31 0.179
Arabinose 2.8075 0.1831 0.1057
Xylose 2.1395 0.7709 0.4451
Galacturonic acid 2.5883 1.0388 0.5997
Rhamnogalacturonan 3.0004 0.1535 0.0886
Pectin esterified 2.5629 0.5065 0.2924
Polygalacturonic acid 2.966 0.8376 0.4836
Sodium acetate 2.209 0.0287 0.0166
No nitrogen 2.3229 0.2767 0.1597
BSA 2.0081 0.5801 0.3349
Glutamine 2.4924 0.6748 0.3896
No phosphate 1.9475 0.7473 0.4314
No carbon 2.3183 0.313 0.2213
No sulphur 2.1177 0.5224 0.3016
Simple and complex carbon sources (12h incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 1.4228 0.787 0.4543
Amylose 1.6993 0.2893 0.167
Fucose 1.7829 0.3408 0.1968
Galactose 1.8518 0.5663 0.327
Lactose 2.3524 0.6378 0.3682
Maltose 1.9429 0.5479 0.3163
Mannitol 2.3582 0.5888 0.34
Rhamnose 1.9115 0.3363 0.1942
Sorbitol 2.3954 0.1132 0.0653
Trehalose 2.2524 0.4316 0.2492
Glycerol 1.8067 0.2851 0.1646
Glucuronic acid 1.5729 0.1162 0.0671
Arabinan 2.3755 0.2385 0.1377
Galactan 1.2128 0.2726 0.1574
Galactomannan 1.9183 0.6809 0.3931
Glucan 1.7557 0.6321 0.3649
Xylan 1.7241 0.3508 0.2025
Xyloglucan 1.9258 0.2735 0.1579
Arabinogalactan 1.7822 0.2154 0.1244
Pectin 3.7227 1.9312 1.115
Rhamnogalacturonan 2.9723 2.0613 1.1901
Polygalacturonic acid 1.5209 0.2141 0.1236
Mannan 2.0204 0.7632 0.4406
Amylopectin 1.8786 0.2288 0.1321
Inulin 2.1728 0.4741 0.2737
BSA 1.5511 0.2048 0.1182
Starvation induced by water agar transfer Expression profiling on starvation induced by transfer to water agar Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Control 0.9916 0.1734 0.1001
2h WAT 0.9369 0.9642 0.5567
4h WAT 1.2159 0.5722 0.3304
8h WAT 1.0076 0.5715 0.3299
16h WAT 0.9909 0.6121 0.3534
24h WAT 1.6168 0.7134 0.4119
WAT hyphal knot -30h 0.744 0.2327 0.1344
WAT hyphal knot -22h 1.1096 0.4718 0.2724
WAT hyphal knot -15h 0.8676 0.6006 0.3468
WAT hyphal knot -7.5h 0.6528 0.5752 0.3321
WAT hyphal knot 1.5731 1.0031 0.5791
WAT hyphal knot +7.5h 1.4576 0.6636 0.3831
Straw time series Time series expression profiling on straw as a carbon source Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 1.2701 0.1728 0.0997
Straw 3h 1.0739 0.1502 0.0867
Straw 6h 0.961 0.4889 0.2822
Straw 12h 1.1388 0.3248 0.1875
Straw 24h 1.4894 0.5739 0.3313
Stress conditions 1 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 1.7115 0.5996 0.3462
Frost (-20C, 30min) 1.4252 0.2846 0.1643
Heat shock (47C, 2h) 1.4579 0.5083 0.2935
High CO2 0.7235 0.4711 0.272
Drought (4% agar, 12h) 1.1988 0.2863 0.1653
Oxidative (1mM H2O2, 3h) 5.8135 0.4436 0.2561
Acidic (pH4, 3h) 1.1136 0.7639 0.4411
Alkaline (pH9, 3h) 1.4213 0.7266 0.4195
Osmotic (sorbitol 2h) 1.2451 0.3857 0.2227
CongoRed (3h) 0.7671 0.2327 0.1343
Cobalt chloride control 1.7465 0.3869 0.2234
Cobalt chloride 2mM 2.1383 0.1745 0.1008
Stress conditions 2 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 0.8005 1.2499 0.7216
Cold stimulation 2.2045 1.1292 0.6519
Scratched surface 0.528 0.1941 0.112
Ca2+, 200mM, 24h 2.9967 0.3689 0.213
Cu2+, 2mM, 6h 0.3903 0.2761 0.1594
Voriconazole 1.4281 0.8011 0.4625
Trichoderma interaction, early 0.7 0.4527 0.2613
Trichoderma interaction 60h 7.5232 3.3566 1.9379
Cobalt chloride 2mM repeat 1.1001 0.8218 0.4745
Hypoxia 1.1744 0.8113 0.4684
Hypoxia control 1.3257 1.0411 0.6011
Protoplastation control 1.3025 0.1559 0.1102
Protoplastation 3.5h 3.1026 1.0978 0.7762
Protoplastation 1.5h 0 0 0

General data

Systematic name -
Protein id CopciAB_407043.T0
Description Other 1 protein kinase

Annotation summary

0 100 200 300 354

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
Pfam PF17667 Fungal protein kinase IPR040976 148 222

SignalP

Prediction Start End Score
No records

Transmembrane domains

Domain n Start End Length
No records

InterPro

Accession Description
IPR011009 Protein kinase-like domain superfamily
IPR040976 Fungal-type protein kinase

GO

Go id Term Ontology
No records

KEGG

KEGG Orthology
No records

EggNOG

COG category Description
E Other 1 protein kinase

CAZy

Class Family Subfamily
No records

Transcription factor

Group
No records

Conservation of CopciAB_407043 across fungi.

Arrow shows the origin of gene family containing CopciAB_407043.

Protein

Sequence id CopciAB_407043.T0
Sequence >CopciAB_407043.T0
MPYNMDGTVGRWGLKGRRSVKGELVPHAKHTNTSPKSASSRTTHHDVPPTAKPIFGKFLWREVVRQSEGEIIDTA
MKRAQHLGEHKKDVDHLPRVKCWAQFDDFSTGHIRNFLNIPSEGARVPTVLAAEWLVTVNIDGLAPDDYCRAIWQ
LIRCHFLLWQLGIAHGDISMSNLMRRPETGNQAVLNGFDLATTMDPGDLSPKKAGFERMGTKPFMALELLRSTEG
QVKRLWCLVTYCCWQPDWLKGSHFDVYLSKWGWVGLAPHILVDVVDDHPTLLNDVPPGKAAVWKSLLSTFDQLRR
EYTFNYGRTKAPLEKQLELLRIFEKYFIDYEAEGSTRDWQWSEFRGSPYMANVD
Length 354

Coding

Sequence id CopciAB_407043.T0
Sequence >CopciAB_407043.T0
ATGCCATATAACATGGATGGTACTGTGGGCCGCTGGGGATTGAAAGGCCGACGCTCAGTTAAGGGAGAACTGGTC
CCTCATGCGAAACACACCAACACATCACCGAAATCTGCTAGTTCTCGAACGACTCACCACGATGTACCTCCGACT
GCCAAACCAATCTTTGGCAAATTTCTGTGGCGTGAAGTGGTCAGGCAGAGCGAGGGAGAGATCATCGATACGGCA
ATGAAGAGGGCGCAACACCTCGGCGAACACAAGAAAGACGTCGACCACCTTCCTCGCGTCAAATGCTGGGCCCAA
TTCGACGACTTTTCTACTGGCCATATCCGAAACTTCCTGAACATCCCTTCTGAAGGTGCTCGGGTCCCAACAGTA
CTTGCTGCCGAGTGGCTGGTTACCGTTAATATCGATGGCCTCGCGCCAGACGATTACTGTCGCGCCATATGGCAG
CTCATCCGTTGTCATTTCTTGCTATGGCAACTCGGAATCGCGCATGGCGATATCAGCATGTCGAACCTCATGCGG
CGTCCGGAAACGGGCAACCAGGCAGTCCTAAACGGTTTTGATTTGGCGACAACCATGGACCCCGGAGATCTCTCC
CCCAAGAAGGCGGGCTTCGAGCGCATGGGAACCAAACCTTTCATGGCACTCGAGCTATTGAGGAGTACAGAGGGA
CAAGTCAAGCGTCTCTGGTGCCTGGTGACCTACTGTTGCTGGCAACCGGATTGGCTCAAAGGCTCTCATTTTGAC
GTGTACCTTTCGAAGTGGGGCTGGGTGGGGCTCGCGCCCCACATCCTAGTGGACGTGGTCGACGACCATCCCACT
CTACTCAACGACGTTCCTCCAGGAAAAGCGGCGGTATGGAAGTCGTTGCTGTCAACCTTTGATCAACTTCGAAGG
GAGTATACGTTCAACTACGGCCGGACGAAGGCTCCTTTGGAGAAGCAACTGGAACTCTTGCGCATATTTGAGAAG
TACTTTATTGACTATGAAGCTGAAGGGTCGACGCGCGATTGGCAGTGGTCTGAGTTTCGGGGTTCACCGTACATG
GCCAATGTTGATTAG
Length 1065

Transcript

Sequence id CopciAB_407043.T0
Sequence >CopciAB_407043.T0
GGTCAGGTCAAGCCATCAACATGGGCTTTTTGCACCGTCAGGTATGCCATATAACATGGATGGTACTGTGGGCCG
CTGGGGATTGAAAGGCCGACGCTCAGTTAAGGGAGAACTGGTCCCTCATGCGAAACACACCAACACATCACCGAA
ATCTGCTAGTTCTCGAACGACTCACCACGATGTACCTCCGACTGCCAAACCAATCTTTGGCAAATTTCTGTGGCG
TGAAGTGGTCAGGCAGAGCGAGGGAGAGATCATCGATACGGCAATGAAGAGGGCGCAACACCTCGGCGAACACAA
GAAAGACGTCGACCACCTTCCTCGCGTCAAATGCTGGGCCCAATTCGACGACTTTTCTACTGGCCATATCCGAAA
CTTCCTGAACATCCCTTCTGAAGGTGCTCGGGTCCCAACAGTACTTGCTGCCGAGTGGCTGGTTACCGTTAATAT
CGATGGCCTCGCGCCAGACGATTACTGTCGCGCCATATGGCAGCTCATCCGTTGTCATTTCTTGCTATGGCAACT
CGGAATCGCGCATGGCGATATCAGCATGTCGAACCTCATGCGGCGTCCGGAAACGGGCAACCAGGCAGTCCTAAA
CGGTTTTGATTTGGCGACAACCATGGACCCCGGAGATCTCTCCCCCAAGAAGGCGGGCTTCGAGCGCATGGGAAC
CAAACCTTTCATGGCACTCGAGCTATTGAGGAGTACAGAGGGACAAGTCAAGCGTCTCTGGTGCCTGGTGACCTA
CTGTTGCTGGCAACCGGATTGGCTCAAAGGCTCTCATTTTGACGTGTACCTTTCGAAGTGGGGCTGGGTGGGGCT
CGCGCCCCACATCCTAGTGGACGTGGTCGACGACCATCCCACTCTACTCAACGACGTTCCTCCAGGAAAAGCGGC
GGTATGGAAGTCGTTGCTGTCAACCTTTGATCAACTTCGAAGGGAGTATACGTTCAACTACGGCCGGACGAAGGC
TCCTTTGGAGAAGCAACTGGAACTCTTGCGCATATTTGAGAAGTACTTTATTGACTATGAAGCTGAAGGGTCGAC
GCGCGATTGGCAGTGGTCTGAGTTTCGGGGTTCACCGTACATGGCCAATGTTGATTAGCGTAGTAGACTGACCGA
CTACACGCGCGTCTAATTTACTTCCTGCCTCTTTC
Length 1160

Gene

Sequence id CopciAB_407043.T0
Sequence >CopciAB_407043.T0
GGTCAGGTCAAGCCATCAACATGGGCTTTTTGCACCGTCAGGTATGCCATATAACATGGGTAAATGTACTGAAAG
CACTGCCAATTGGACATTGAAGTTGACGGAAAGACAATTCCACACGCGTTTCCAGATGGTACTGTGGGCCGCTGG
GGATTGAAAGGCCGACGCTCAGTTAAGGGAGAACTGGTCCCTCATGCGAAACACACCAACACATCACCGAAATCT
GCTAGTTCTCGAACGACTCACCACGATGTACCTCCGACTGCCAAACCAATCTTTGGCAAATTTCTGTGGCGTGAA
GTGGTCAGGCAGAGCGAGGGAGAGATCATCGATACGGCAATGAAGAGGGCGCAACACCTCGGCGAACACAAGAAA
GACGTCGACCACCTTCCTCGCGTCAAATGCTGGGCCCAATTCGACGACTTTTCTACTGGCCATATCCGAAACTTC
CTGAACATCCCTTCTGAAGGTGCTCGGGTCCCAACAGTACTTGCTGCCGAGTGGCTGGTTACCGTTAATATCGAT
GGCCTCGCGCCAGACGATTACTGTCGCGCCATATGGCAGCTCATCCGTTGCAAGTACTCATTACAATCCGAGGAT
TAATGCAGCTGAAGTATGTTTCTTTCATCCTCTAGGTCATTTCTTGCTATGGCAACTCGGAATCGCGCATGGCGA
TATCAGCATGTCGAACCTCATGCGGCGTCCGGAAACGGGCAACCAGGCAGTCCTAAACGGTTTTGATTTGGCGAC
AACCATGGACCCCGGAGATCTCTCCCCCAAGAAGGCGGGCTTCGAGCGCATGGGAACCAAACCTTTCATGGCACT
CGAGCTATTGAGGAGTACAGAGGGACAAGTCAAGCGTCTCTGGTGCCTGGTGACCTACTGTTGCTGGCAACCGGA
TTGGCTCAAAGGCTCTCATTTTGACGTGTACCTTTCGAAGTGGGGCTGGGTGGGGCTCGCGCCCCACATCCTAGT
GGACGTGGTCGACGACCATCCCACTCTACTCAACGACGTTCCTCCAGGAAAAGCGGCGGTATGGAAGTCGTTGCT
GTCAACCTTTGATCAACTTCGAAGGGAGTATACGTTCAACTACGGCCGGACGAAGGCTCCTTTGGAGAAGCAACT
GGAACTCTTGCGCATATTTGAGAAGTACTTTATTGACTATGAAGCTGAAGGGTCGACGCGCGATTGGCAGTGGTC
TGAGTTTCGGGGTTCACCGTACATGGCCAATGTTGATTAGCGTAGTAGACTGACCGACTACACGCGCGTCTAATT
TACTTCCTGCCTCTTTC
Length 1292