Systematic name | CopciAB_408364 | Strain | Coprinopsis cinerea Okayama 7 |
---|---|---|---|
Standard name | - | Synonyms | 408364 |
Uniprot id | Functional description | PKL CAK Fmp29-like protein kinase subdomain-containing protein | |
Location | scaffold_11:634585..636129 | Strand | + |
Gene length (nt) | 1545 | Transcript length (nt) | 1494 |
CDS length (nt) | 1494 | Protein length (aa) | 497 |
Strain name | Gene / Protein name |
---|---|
Strain name | Gene / Protein name | Pident | E-value | Bits |
---|---|---|---|---|
Auricularia subglabra | Aurde3_1_1313312 | 27.3 | 8.198E-26 | 113 |
Name | Summary | Attribution | Assay type | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Carbon metabolism | Transcriptional changes along alternative morphogenetic paths of C. cinerea | Xie et al. 2020 | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Complex carbon sources 1 (long incubation) | Expression profiling on diverse complex carbon sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Coprinopsis challenged with bacteria | Transcriptional response to Bacillus subtilis and Escherichia coli. | Kombrink et al. 2018 | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Early development 1 | Time series expression profiling of basidiospore and oidium germination | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Early development 2 | Time series expression profiling of mycelial growth, light induction and fruiting body initiation. | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Fruiting body development | RNA-Seq analysis of fruiting body development | Krizsan et al. 2019 | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Nitrogen sources (12h incubation) | Expression profiling on diverse nitrogen sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Plant biomass (12h incubation) | Expression profiling on diverse plant biomasses as carbon sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Simple and complex carbon and nitrogen sources | Expression profiling on diverse complex carbon and nitrogen sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Simple and complex carbon sources (12h incubation) | Expression profiling on diverse complex carbon sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Starvation induced by water agar transfer | Expression profiling on starvation induced by transfer to water agar | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Straw time series | Time series expression profiling on straw as a carbon source | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Stress conditions 1 | Expression profiling under various stress conditions | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Stress conditions 2 | Expression profiling under various stress conditions | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
Systematic name | - |
---|---|
Protein id | CopciAB_408364.T0 |
Description | PKL CAK Fmp29-like protein kinase subdomain-containing protein |
Analysis | Signature accession | Signature description | InterPro Accession | Start | End |
---|---|---|---|---|---|
Pfam | PF01636 | Phosphotransferase enzyme family | IPR002575 | 165 | 440 |
Prediction | Start | End | Score |
---|---|---|---|
No records |
Domain n | Start | End | Length |
---|---|---|---|
No records |
Accession | Description |
---|---|
IPR002575 | Aminoglycoside phosphotransferase |
IPR011009 | Protein kinase-like domain superfamily |
Go id | Term | Ontology |
---|---|---|
No records |
KEGG Orthology |
---|
No records |
COG category | Description |
---|---|
G | PKL CAK Fmp29-like protein kinase subdomain-containing protein |
Class | Family | Subfamily |
---|---|---|
No records |
Group |
---|
No records |
Arrow shows the origin of gene family containing CopciAB_408364.
Sequence id | CopciAB_408364.T0 |
---|---|
Sequence |
>CopciAB_408364.T0 MEALIYVIPLGWIPSIFDAIKRDARICVMLGGFTECIQNRCVAGANISVRLSLHLRHMMMQPTISITRPQKLPSN WASQLGDADIPPEAILRPRSDWMDDEDWEDLSLGIDPRALTVAVMHTFGLTPPSNPLPKLRRHNSGGFNDLYVAT FRMEDGYPEQFEVAIRMPLKRGRLSGRLETTVALMSYVKFCAGLSVPTVFAWCDGTAGDGNPVGAPYIIMEYLQA PKGDPWHDMFFNHTPSRDFWYNMMDIMAKGHGALATPLPFHGFGSLYFSDVPNCDGRRETDEELKRVERYRIGPL VYGPMVTGHRTQARTGDVSPCQGSEKATSLVALWKFLWEREVEAIKQKHDHDISRPLVWLEPDALDVDEGEDNEQ CTLSDFLQTADHLLQYIENSQLPADAALLQPCIVPMDYAMRNVIFNDDKTAITAFLDWDDVAILPFILCSMYLAE ISYNWGDEEWRRETGGFGCIQPPSAEDVTEEELEALFQYKRVMTKRI |
Length | 497 |
Sequence id | CopciAB_408364.T0 |
---|---|
Sequence |
>CopciAB_408364.T0 ATGGAGGCGCTGATCTACGTTATCCCGTTGGGTTGGATACCTTCCATCTTCGATGCCATCAAGCGGGATGCGCGG ATCTGTGTTATGTTGGGAGGCTTCACCGAATGCATTCAAAACCGCTGCGTTGCTGGCGCAAATATTTCAGTACGA CTCTCCCTTCATCTCCGGCATATGATGATGCAACCCACCATATCAATCACTCGACCACAGAAACTGCCTTCGAAT TGGGCGTCACAGTTGGGCGATGCTGATATTCCACCTGAAGCCATCCTTCGACCTCGGAGTGATTGGATGGACGAT GAAGACTGGGAGGATCTGTCCCTCGGCATCGATCCACGAGCGCTCACCGTTGCAGTTATGCATACATTCGGTTTA ACCCCTCCCTCCAACCCACTTCCGAAGCTCCGAAGGCACAATTCAGGCGGGTTTAACGACCTCTATGTCGCGACC TTTCGAATGGAAGACGGCTACCCGGAACAATTCGAGGTCGCTATCCGAATGCCACTCAAGCGGGGTCGATTGTCG GGCAGACTCGAGACGACGGTGGCTCTAATGAGCTATGTCAAGTTCTGCGCGGGTCTCTCTGTCCCCACAGTCTTT GCGTGGTGTGATGGCACGGCGGGGGATGGAAACCCGGTCGGCGCGCCCTATATCATCATGGAATACCTCCAAGCC CCTAAAGGCGATCCATGGCATGACATGTTTTTCAACCACACCCCCAGCCGCGACTTCTGGTACAACATGATGGAC ATCATGGCAAAGGGACATGGAGCACTCGCCACACCATTACCTTTCCACGGATTTGGATCACTCTATTTTTCGGAT GTCCCGAACTGTGATGGCCGGAGGGAGACAGACGAAGAGTTGAAGAGGGTGGAGAGATATCGCATAGGCCCGCTG GTTTATGGCCCGATGGTAACTGGACATCGAACCCAAGCCCGTACTGGGGATGTCAGTCCCTGTCAAGGGTCAGAG AAAGCAACATCTCTGGTAGCCCTCTGGAAGTTCTTATGGGAGCGGGAGGTCGAGGCTATCAAGCAGAAGCACGAT CACGACATCAGCAGGCCTCTTGTATGGCTTGAGCCTGACGCTTTGGACGTGGATGAAGGCGAGGACAACGAGCAG TGTACACTTTCCGATTTCCTTCAAACGGCGGATCACCTCCTCCAATACATCGAGAACTCCCAACTCCCAGCTGAT GCAGCACTCCTCCAACCTTGCATTGTCCCCATGGATTATGCGATGCGTAACGTCATCTTTAACGACGACAAAACA GCAATCACAGCATTTCTGGATTGGGACGATGTCGCTATTCTACCCTTCATCCTCTGCTCCATGTATCTGGCCGAG ATCAGTTATAACTGGGGAGACGAGGAATGGAGACGGGAAACAGGTGGTTTCGGCTGCATTCAGCCTCCGTCTGCA GAAGATGTGACGGAAGAGGAACTGGAAGCTTTGTTCCAGTACAAACGGGTGATGACGAAAAGAATATGA |
Length | 1494 |
Sequence id | CopciAB_408364.T0 |
---|---|
Sequence |
>CopciAB_408364.T0 ATGGAGGCGCTGATCTACGTTATCCCGTTGGGTTGGATACCTTCCATCTTCGATGCCATCAAGCGGGATGCGCGG ATCTGTGTTATGTTGGGAGGCTTCACCGAATGCATTCAAAACCGCTGCGTTGCTGGCGCAAATATTTCAGTACGA CTCTCCCTTCATCTCCGGCATATGATGATGCAACCCACCATATCAATCACTCGACCACAGAAACTGCCTTCGAAT TGGGCGTCACAGTTGGGCGATGCTGATATTCCACCTGAAGCCATCCTTCGACCTCGGAGTGATTGGATGGACGAT GAAGACTGGGAGGATCTGTCCCTCGGCATCGATCCACGAGCGCTCACCGTTGCAGTTATGCATACATTCGGTTTA ACCCCTCCCTCCAACCCACTTCCGAAGCTCCGAAGGCACAATTCAGGCGGGTTTAACGACCTCTATGTCGCGACC TTTCGAATGGAAGACGGCTACCCGGAACAATTCGAGGTCGCTATCCGAATGCCACTCAAGCGGGGTCGATTGTCG GGCAGACTCGAGACGACGGTGGCTCTAATGAGCTATGTCAAGTTCTGCGCGGGTCTCTCTGTCCCCACAGTCTTT GCGTGGTGTGATGGCACGGCGGGGGATGGAAACCCGGTCGGCGCGCCCTATATCATCATGGAATACCTCCAAGCC CCTAAAGGCGATCCATGGCATGACATGTTTTTCAACCACACCCCCAGCCGCGACTTCTGGTACAACATGATGGAC ATCATGGCAAAGGGACATGGAGCACTCGCCACACCATTACCTTTCCACGGATTTGGATCACTCTATTTTTCGGAT GTCCCGAACTGTGATGGCCGGAGGGAGACAGACGAAGAGTTGAAGAGGGTGGAGAGATATCGCATAGGCCCGCTG GTTTATGGCCCGATGGTAACTGGACATCGAACCCAAGCCCGTACTGGGGATGTCAGTCCCTGTCAAGGGTCAGAG AAAGCAACATCTCTGGTAGCCCTCTGGAAGTTCTTATGGGAGCGGGAGGTCGAGGCTATCAAGCAGAAGCACGAT CACGACATCAGCAGGCCTCTTGTATGGCTTGAGCCTGACGCTTTGGACGTGGATGAAGGCGAGGACAACGAGCAG TGTACACTTTCCGATTTCCTTCAAACGGCGGATCACCTCCTCCAATACATCGAGAACTCCCAACTCCCAGCTGAT GCAGCACTCCTCCAACCTTGCATTGTCCCCATGGATTATGCGATGCGTAACGTCATCTTTAACGACGACAAAACA GCAATCACAGCATTTCTGGATTGGGACGATGTCGCTATTCTACCCTTCATCCTCTGCTCCATGTATCTGGCCGAG ATCAGTTATAACTGGGGAGACGAGGAATGGAGACGGGAAACAGGTGGTTTCGGCTGCATTCAGCCTCCGTCTGCA GAAGATGTGACGGAAGAGGAACTGGAAGCTTTGTTCCAGTACAAACGGGTGATGACGAAAAGAATATGA |
Length | 1494 |
Sequence id | CopciAB_408364.T0 |
---|---|
Sequence |
>CopciAB_408364.T0 ATGGAGGCGCTGATCTACGTTATCCCGTTGGGTTGGATACCTTCCATCTTCGATGCCATCAAGCGGGATGCGCGG ATCTGTGTTATGTTGGGAGGCTTCACCGAGTCAGTGGCTATCATCTCCGGGTCCGATATACGACTACAACTGAGT GGTAGATGCATTCAAAACCGCTGCGTTGCTGGCGCAAATATTTCAGTACGACTCTCCCTTCATCTCCGGCATATG ATGATGCAACCCACCATATCAATCACTCGACCACAGAAACTGCCTTCGAATTGGGCGTCACAGTTGGGCGATGCT GATATTCCACCTGAAGCCATCCTTCGACCTCGGAGTGATTGGATGGACGATGAAGACTGGGAGGATCTGTCCCTC GGCATCGATCCACGAGCGCTCACCGTTGCAGTTATGCATACATTCGGTTTAACCCCTCCCTCCAACCCACTTCCG AAGCTCCGAAGGCACAATTCAGGCGGGTTTAACGACCTCTATGTCGCGACCTTTCGAATGGAAGACGGCTACCCG GAACAATTCGAGGTCGCTATCCGAATGCCACTCAAGCGGGGTCGATTGTCGGGCAGACTCGAGACGACGGTGGCT CTAATGAGCTATGTCAAGTTCTGCGCGGGTCTCTCTGTCCCCACAGTCTTTGCGTGGTGTGATGGCACGGCGGGG GATGGAAACCCGGTCGGCGCGCCCTATATCATCATGGAATACCTCCAAGCCCCTAAAGGCGATCCATGGCATGAC ATGTTTTTCAACCACACCCCCAGCCGCGACTTCTGGTACAACATGATGGACATCATGGCAAAGGGACATGGAGCA CTCGCCACACCATTACCTTTCCACGGATTTGGATCACTCTATTTTTCGGATGTCCCGAACTGTGATGGCCGGAGG GAGACAGACGAAGAGTTGAAGAGGGTGGAGAGATATCGCATAGGCCCGCTGGTTTATGGCCCGATGGTAACTGGA CATCGAACCCAAGCCCGTACTGGGGATGTCAGTCCCTGTCAAGGGTCAGAGAAAGCAACATCTCTGGTAGCCCTC TGGAAGTTCTTATGGGAGCGGGAGGTCGAGGCTATCAAGCAGAAGCACGATCACGACATCAGCAGGCCTCTTGTA TGGCTTGAGCCTGACGCTTTGGACGTGGATGAAGGCGAGGACAACGAGCAGTGTACACTTTCCGATTTCCTTCAA ACGGCGGATCACCTCCTCCAATACATCGAGAACTCCCAACTCCCAGCTGATGCAGCACTCCTCCAACCTTGCATT GTCCCCATGGATTATGCGATGCGTAACGTCATCTTTAACGACGACAAAACAGCAATCACAGCATTTCTGGATTGG GACGATGTCGCTATTCTACCCTTCATCCTCTGCTCCATGTATCTGGCCGAGATCAGTTATAACTGGGGAGACGAG GAATGGAGACGGGAAACAGGTGGTTTCGGCTGCATTCAGCCTCCGTCTGCAGAAGATGTGACGGAAGAGGAACTG GAAGCTTTGTTCCAGTACAAACGGGTGATGACGAAAAGAATATGA |
Length | 1545 |