CopciAB_418410
Coprinopsis cinerea A43mutB43mut pab1-1 #326

General data

Systematic name CopciAB_418410 Strain Coprinopsis cinerea Okayama 7
Standard name PKH1 Synonyms 418410
Uniprot id Functional description Protein tyrosine kinase
Location scaffold_8:944837..946320 Strand -
Gene length (nt) 1484 Transcript length (nt) 1211
CDS length (nt) 1041 Protein length (aa) 346

Reciprocal best hits in model fungi

Strain name Gene / Protein name
Schizosaccharomyces pombe ksg1

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
Agrocybe aegerita Agrae_CAA7264336 55.6 1.061E-128 410
Lentinula edodes W1-26 v1.0 Lentinedodes1_16037 41.9 1.642E-84 282
Auricularia subglabra Aurde3_1_1158426 44.3 1.31E-83 280
Lentinula edodes NBRC 111202 Lenedo1_1170797 41.3 2.085E-81 273
Hypsizygus marmoreus strain 51987-8 Hypma_RDB28735 40.9 3.079E-78 264
Lentinula edodes B17 Lened_B_1_1_16644 42.3 4.574E-78 263
Pleurotus ostreatus PC15 PleosPC15_2_1112776 39.7 2.416E-77 261
Flammulina velutipes Flave_chr07AA00378 41.4 5.749E-77 260
Grifola frondosa Grifr_OBZ67282 46.6 1.358E-75 256
Ganoderma sp. 10597 SS1 v1.0 Gansp1_116275 41.1 3.001E-75 255
Schizophyllum commune H4-8 Schco3_2550266 41.2 1.808E-74 253
Pleurotus eryngii ATCC 90797 Pleery1_1467727 39 1.606E-74 253
Agaricus bisporus var. burnettii JB137-S8 Agabi_varbur_1_36927 43.1 2.712E-74 252
Agaricus bisporus var bisporus (H97) Agabi_varbisH97_2_68901 43.1 1.268E-73 250
Pleurotus ostreatus PC9 PleosPC9_1_51132 43.9 1.22E-64 224

Expression

Name Summary Attribution Assay type
Carbon metabolism Transcriptional changes along alternative morphogenetic paths of C. cinerea Xie et al. 2020 RNA-Seq
Sample Mean cpm SD cpm Se of mean
sclerotia 38.865 1.7317 0.9998
oidia 44.2499 1.8985 1.0961
vegetative_mycelium 42.5096 7.0554 4.0734
primordia 34.7392 0.4546 0.2625
hyphal_knot 44.5496 2.5393 1.4661
young_fruiting_body 17.3798 2.3244 1.342
Complex carbon sources 1 (long incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control - glucose 61.5597 6.3488 3.6655
Wheat bran 61.7332 13.7933 7.9636
Horse manure 35.6078 2.0513 1.1843
Oak leaves 30.9597 5.7487 3.319
Hay 41.4676 9.8251 5.6725
Corn stalk 39.9541 6.0066 3.4679
Pectine 41.1789 1.119 0.6461
Microcrystalline cellulose 55.3184 8.6618 5.0009
Xylose 46.4562 1.7033 0.9834
Cellobiose 57.8701 5.2634 3.0388
Lignin 38.7849 5.6519 3.2631
Apple peels 51.2808 3.0641 1.769
Coprinopsis challenged with bacteria Transcriptional response to Bacillus subtilis and Escherichia coli. Kombrink et al. 2018 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control 55.6488 4.3401 2.5057
Bsubtilis 63.8854 1.3749 0.7938
Ecoli 70.8752 2.5584 1.4771
Early development 1 Time series expression profiling of basidiospore and oidium germination Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
BS 0h 25.4961 6.4347 3.7151
BS 4h 26.4316 1.8095 1.0447
BS 8h 15.9514 1.7427 1.0061
BS 12h 17.7283 1.4726 0.8502
Oidia 0 h 12.1604 4.292 2.478
Oidia 18 h 15.222 0.7549 0.4358
Sclerotia 18.7847 2.2655 1.308
Early development 2 Time series expression profiling of mycelial growth, light induction and fruiting body initiation. Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
DM 12h 12.2723 1.7455 1.0077
DM 36h 12.6405 0.5217 0.3012
DM 60h 20.321 2.8559 1.6488
DM 84h 22.59 2.3 1.3279
DM 108h 20.4532 3.1492 1.8182
DM 132h 20.1775 0.6852 0.3956
DM 156hAE 25.9604 5.973 3.4485
ELI1hAE 12.9091 0.1511 0.0872
ELI2hAE 15.6917 3.1428 1.8145
LI2hAE 12.48 1.2059 0.6962
LI6hAE 20.6467 2.716 1.5681
LI12hAE 8.6537 3.4357 1.9836
LI18hAE 12.6702 2.6817 1.5483
LI 24hAE 21.1622 3.5262 2.0359
DM 156hAM 21.7626 0.3698 0.2135
ELI1hAM 10.9729 3.8195 2.2052
ELI2hAM 9.5808 2.1735 1.2548
LI2hAM 12.7754 0.7026 0.4057
LI6hAM 14.486 2.2756 1.3138
LI12hAM 10.7605 1.6025 0.9252
LI18hAM 9.286 1.3137 0.7585
LI 24hAM 24.1552 3.729 2.1529
LI 24hHK 17.443 4.3927 2.5362
L/D 6h 16.7012 4.8884 2.8223
L/D 12h 13.7629 2.5599 1.478
L/D 18h 16.6975 1.9239 1.1108
L/D 24h 12.5457 3.223 1.8608
Fruiting body development RNA-Seq analysis of fruiting body development Krizsan et al. 2019 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Vegetative mycelium 58.5192 9.841 5.6817
Hyphal knots 33.5772 9.1534 5.2847
Primordium 1 27.0425 4.9717 2.8704
Primordium 2 32.352 7.132 4.1177
Young Fruiting body cap 14.9647 3.4931 2.0167
Younf fruiting body gill 28.4619 2.0773 1.1993
Young fruiting body stipe 32.1397 5.9212 3.4186
Mature fruiting body cap_gill 18.4356 0.8121 0.4689
Mature fruiting body stipe 36.1885 6.4862 3.7448
Nitrogen sources (12h incubation) Expression profiling on diverse nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Complete medium - control 20.9735 0.8044 0.4644
NH4NO3 28.5141 8.2965 4.79
Proline 26.99 6.5376 3.7745
Tryptophan 35.1972 6.6254 3.8252
Isoleucin 30.6198 2.7207 1.5708
Arginine 26.2604 5.0085 2.8916
Metionine 19.9064 1.2803 0.7392
NaNO3 21.5821 0.7216 0.4166
Plant biomass (12h incubation) Expression profiling on diverse plant biomasses as carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 20.9735 0.8044 0.4644
Citrus peel 13.0711 1.6894 0.9754
Poplar leaves 15.8077 0.7819 0.4514
Typha leaves 13.1299 2.7547 1.5905
Overwintered Salix leaves 13.7427 0.6153 0.3552
Reed flowering 14.6109 2.278 1.3152
Tigernut 13.1185 1.6609 0.9589
Energy cane 13.4536 0.9665 0.558
Guar gum 23.3735 5.2297 3.0194
Apple peels 13.033 1.4212 0.8205
Cellobiose 16.2233 1.8879 1.09
Corn stalk 18.651 4.8184 2.7819
Horse manure 16.0294 3.3249 1.9196
Lignin 19.0625 5.0307 2.9045
Microcrystalline cellulose 14.5771 2.0857 1.2042
Oak leaves 18.9072 2.4058 1.389
Pectin esterified 22.715 10.7248 6.192
Poplar sawdust 23.1593 12.8963 7.4457
Wheat bran 23.4638 0.3863 0.223
Chlamydomonas reinhardtii 19.4974 7.406 4.2759
Vertatryl alcohol 22.6445 1.1361 0.6559
Furfural 22.465 3.3837 1.9536
Autoclaved mycelium 16.1545 0.6979 0.4029
Simple and complex carbon and nitrogen sources Expression profiling on diverse complex carbon and nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 51.5643 3.3355 1.9258
Ribose 53.9875 2.4508 1.415
Mannose 42.5687 2.2468 1.5887
Fructose 54.3619 6.1605 3.5568
Arabinose 49.1627 5.2015 3.0031
Xylose 48.5257 3.5671 2.0595
Galacturonic acid 54.3148 3.2972 1.9036
Rhamnogalacturonan 57.0192 5.1864 2.9944
Pectin esterified 62.9948 3.7375 2.1578
Polygalacturonic acid 51.3403 6.2987 3.6366
Sodium acetate 50.3446 3.7902 2.1883
No nitrogen 49.1757 2.6 1.5011
BSA 55.822 1.5695 0.9062
Glutamine 50.5768 4.4162 2.5497
No phosphate 48.3271 4.5803 2.6445
No carbon 60.0558 1.3991 0.9893
No sulphur 42.2446 0.3757 0.2169
Simple and complex carbon sources (12h incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 20.9735 0.8044 0.4644
Amylose 32.2535 1.9268 1.1125
Fucose 28.3759 1.6221 0.9365
Galactose 34.2448 1.4612 0.8436
Lactose 26.7272 4.2866 2.4749
Maltose 32.4242 6.622 3.8232
Mannitol 29.9043 6.387 3.6875
Rhamnose 25.4046 8.1556 4.7086
Sorbitol 25.2016 4.0373 2.3309
Trehalose 25.9693 4.0147 2.3179
Glycerol 25.3895 3.3164 1.9147
Glucuronic acid 30.3903 3.6814 2.1254
Arabinan 22.6676 3.8916 2.2468
Galactan 18.9023 2.3685 1.3675
Galactomannan 24.0559 10.7816 6.2248
Glucan 20.3434 4.4192 2.5514
Xylan 21.6443 3.7314 2.1543
Xyloglucan 26.4719 5.3238 3.0737
Arabinogalactan 27.4505 0.9771 0.5641
Pectin 35.8308 12.6585 7.3084
Rhamnogalacturonan 21.6764 4.9654 2.8668
Polygalacturonic acid 27.7163 0.715 0.4128
Mannan 24.6658 2.9916 1.7272
Amylopectin 29.4096 11.0258 6.3658
Inulin 28.4081 4.4443 2.5659
BSA 8.6573 1.2277 0.7088
Starvation induced by water agar transfer Expression profiling on starvation induced by transfer to water agar Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Control 20.321 2.8559 1.6488
2h WAT 16.2757 5.2489 3.0305
4h WAT 11.9411 3.4026 1.9645
8h WAT 12.9862 1.3162 0.7599
16h WAT 11.3332 4.6725 2.6977
24h WAT 10.7648 1.7868 1.0316
WAT hyphal knot -30h 7.2398 2.076 1.1986
WAT hyphal knot -22h 4.2662 1.2091 0.6981
WAT hyphal knot -15h 4.177 1.343 0.7754
WAT hyphal knot -7.5h 6.8913 2.4792 1.4314
WAT hyphal knot 7.3337 1.7608 1.0166
WAT hyphal knot +7.5h 15.5784 3.6154 2.0873
Straw time series Time series expression profiling on straw as a carbon source Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 16.5391 0.6391 0.369
Straw 3h 22.1361 1.7054 0.9846
Straw 6h 19.5074 7.948 4.5888
Straw 12h 14.174 1.892 1.0923
Straw 24h 18.5636 3.2684 1.887
Stress conditions 1 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 12.0692 3.4525 1.9933
Frost (-20C, 30min) 20.4146 0.5871 0.339
Heat shock (47C, 2h) 8.9927 0.7466 0.4311
High CO2 17.7644 3.9317 2.27
Drought (4% agar, 12h) 16.9087 3.0232 1.7454
Oxidative (1mM H2O2, 3h) 13.1018 0.7951 0.459
Acidic (pH4, 3h) 12.8982 4.6689 2.6956
Alkaline (pH9, 3h) 12.9064 1.9169 1.1067
Osmotic (sorbitol 2h) 20.9458 4.1553 2.3991
CongoRed (3h) 12.587 0.8386 0.4842
Cobalt chloride control 17.9787 2.8021 1.6178
Cobalt chloride 2mM 20.3142 2.5443 1.469
Stress conditions 2 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 10.2037 7.3448 4.2405
Cold stimulation 17.571 2.3308 1.3457
Scratched surface 6.3466 0.4565 0.2635
Ca2+, 200mM, 24h 20.1926 3.2665 1.8859
Cu2+, 2mM, 6h 9.666 2.7153 1.5677
Voriconazole 14.6462 0.8311 0.4798
Trichoderma interaction, early 8.4779 2.0474 1.182
Trichoderma interaction 60h 7.9982 6.0119 3.471
Cobalt chloride 2mM repeat 13.9461 4.3109 2.4889
Hypoxia 15.2726 3.301 1.9058
Hypoxia control 19.2967 1.2401 0.716
Protoplastation control 14.4353 3.94 2.786
Protoplastation 3.5h 11.8433 0.5735 0.4055
Protoplastation 1.5h 12.7026 3.7962 2.6843

General data

Systematic name PKH1
Protein id CopciAB_418410.T0
Description Protein tyrosine kinase

Annotation summary

0 100 200 300 346

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
Pfam PF00069 Protein kinase domain IPR000719 20 282

SignalP

Prediction Start End Score
No records

Transmembrane domains

Domain n Start End Length
1 205 224 19

InterPro

Accession Description
IPR008271 Serine/threonine-protein kinase, active site
IPR011009 Protein kinase-like domain superfamily
IPR000719 Protein kinase domain

GO

Go id Term Ontology
GO:0004672 protein kinase activity MF
GO:0006468 protein phosphorylation BP
GO:0005524 ATP binding MF

KEGG

KEGG Orthology
K06276

EggNOG

COG category Description
T Protein tyrosine kinase

CAZy

Class Family Subfamily
No records

Transcription factor

Group
No records

Conservation of CopciAB_418410 across fungi.

Arrow shows the origin of gene family containing CopciAB_418410.

Protein

Sequence id CopciAB_418410.T0
Sequence >CopciAB_418410.T0
MSVKAATVQRQPACLDDFDVGEEIAWGSLATIVEGVHKKSGKLFAIKMLNKMQLSKKKMVRSAMLEKDALIALSS
HPHPGIVRLHYCFQDAANLYFVLDLAPNGDLKSLTLKTGSLSLECARYYTAQMIDAINLMHEAGVAHRDIKPENC
LLDKSMRIKIADFGSAYVTSTPLSTPKTNTFVGTAAFLSPEVLLRQEANPRGPDLWAVGACLFFYLFGTYPFSAM
TDYLIMERIKKLDYKIPEGCDPDAADLIKRLLVHHPQERLGVPPNSSIDELRQHPFFVGSREDGKSGHIDWDTIW
TVPAPEIKPGPFKSNPRSSRAESDKAEEELWAKFEEIHLIEDEGRI
Length 346

Coding

Sequence id CopciAB_418410.T0
Sequence >CopciAB_418410.T0
ATGAGTGTTAAAGCAGCTACAGTTCAACGACAGCCTGCTTGTCTAGACGACTTTGATGTCGGCGAGGAAATTGCC
TGGGGGTCTCTGGCAACGATCGTAGAAGGGGTCCACAAGAAATCTGGGAAACTGTTCGCGATAAAGATGCTAAAC
AAGATGCAACTGTCGAAGAAGAAGATGGTGCGCTCTGCTATGCTGGAAAAGGACGCCCTCATTGCGCTCTCGAGT
CATCCACATCCTGGGATCGTTCGTTTGCACTATTGCTTCCAAGACGCGGCCAATTTGTATTTCGTGCTAGATCTA
GCACCGAATGGGGACCTGAAGTCTCTGACACTGAAGACAGGCTCCCTATCATTGGAATGTGCACGTTACTACACG
GCGCAAATGATCGATGCAATTAACCTGATGCATGAAGCGGGTGTGGCACACCGAGATATAAAACCGGAGAACTGT
TTGCTCGACAAATCTATGCGAATTAAGATCGCGGACTTTGGCTCTGCATATGTGACTTCAACGCCACTGTCGACT
CCCAAAACAAATACCTTTGTGGGCACAGCTGCGTTCTTGTCGCCCGAGGTGCTTCTGCGACAGGAAGCTAACCCT
AGAGGGCCTGATCTTTGGGCAGTGGGCGCTTGTCTATTCTTTTATCTATTTGGGACGTACCCTTTCTCAGCGATG
ACCGACTACTTGATCATGGAACGTATCAAGAAGTTGGACTACAAGATCCCTGAAGGTTGCGATCCTGACGCAGCT
GATTTAATCAAGCGCCTATTAGTTCATCACCCCCAGGAAAGACTCGGTGTGCCGCCGAACTCGTCAATAGACGAA
CTCCGCCAACACCCCTTCTTTGTAGGGAGCAGGGAGGATGGCAAGAGTGGGCATATCGATTGGGACACGATCTGG
ACGGTGCCAGCACCAGAGATAAAACCAGGTCCTTTCAAGTCTAACCCACGAAGTTCACGGGCGGAGAGTGACAAG
GCGGAGGAGGAACTGTGGGCCAAATTCGAGGAGATCCATTTGATTGAGGATGAAGGGAGAATTTAG
Length 1041

Transcript

Sequence id CopciAB_418410.T0
Sequence >CopciAB_418410.T0
ATCATTCCGTTTCGACCAGTAACCACCATGAGTGTTAAAGCAGCTACAGTTCAACGACAGCCTGCTTGTCTAGAC
GACTTTGATGTCGGCGAGGAAATTGCCTGGGGGTCTCTGGCAACGATCGTAGAAGGGGTCCACAAGAAATCTGGG
AAACTGTTCGCGATAAAGATGCTAAACAAGATGCAACTGTCGAAGAAGAAGATGGTGCGCTCTGCTATGCTGGAA
AAGGACGCCCTCATTGCGCTCTCGAGTCATCCACATCCTGGGATCGTTCGTTTGCACTATTGCTTCCAAGACGCG
GCCAATTTGTATTTCGTGCTAGATCTAGCACCGAATGGGGACCTGAAGTCTCTGACACTGAAGACAGGCTCCCTA
TCATTGGAATGTGCACGTTACTACACGGCGCAAATGATCGATGCAATTAACCTGATGCATGAAGCGGGTGTGGCA
CACCGAGATATAAAACCGGAGAACTGTTTGCTCGACAAATCTATGCGAATTAAGATCGCGGACTTTGGCTCTGCA
TATGTGACTTCAACGCCACTGTCGACTCCCAAAACAAATACCTTTGTGGGCACAGCTGCGTTCTTGTCGCCCGAG
GTGCTTCTGCGACAGGAAGCTAACCCTAGAGGGCCTGATCTTTGGGCAGTGGGCGCTTGTCTATTCTTTTATCTA
TTTGGGACGTACCCTTTCTCAGCGATGACCGACTACTTGATCATGGAACGTATCAAGAAGTTGGACTACAAGATC
CCTGAAGGTTGCGATCCTGACGCAGCTGATTTAATCAAGCGCCTATTAGTTCATCACCCCCAGGAAAGACTCGGT
GTGCCGCCGAACTCGTCAATAGACGAACTCCGCCAACACCCCTTCTTTGTAGGGAGCAGGGAGGATGGCAAGAGT
GGGCATATCGATTGGGACACGATCTGGACGGTGCCAGCACCAGAGATAAAACCAGGTCCTTTCAAGTCTAACCCA
CGAAGTTCACGGGCGGAGAGTGACAAGGCGGAGGAGGAACTGTGGGCCAAATTCGAGGAGATCCATTTGATTGAG
GATGAAGGGAGAATTTAGATGATTTTTCCCTAGACTCGCTTCTTCTTGGATAGAGCGGGTCATCATTCACGCCAC
TATCTTTCAACTCCTCGTGTAATGTTTTGTATATAGCACACTTCACACTCGGGACCGACCTTGTGTTTTCTCAAG
TTTTTCCTGTC
Length 1211

Gene

Sequence id CopciAB_418410.T0
Sequence >CopciAB_418410.T0
ATCATTCCGTTTCGACCAGTAACCACCATGAGTGTTAAAGCAGCTACAGTTCAACGACAGCCTGCTTGTCTAGAC
GACTTTGATGTCGGCGAGGAAATTGCCTGGGGGTCTCTGGCAACGGTCTAACATGTCCCTCTTACGACGCAATGG
GGCACGCCAGCTGATTCGACCAATACTCAGATCGTAGAAGGGGTCCACAAGAAATCTGGGAAACTGTTCGCGATA
AAGATGCTAAACAAGATGCAACTGTCGAAGAAGAAGATGGTGCGCTCTGCTATGCTGGAAAAGGACGCCCTCATT
GCGCTCTCGAGTCATCCACATCCTGGGATCGTTCGTTTGCACTATTGCTTCCAAGACGCGGCCAATTTGTGTATG
TGCATTCTCTGAAGACCTTTTGACAACACACAGACTGACAGGTTGTGTGGCCTTAGATTTCGTGCTAGATCTAGC
ACCGAATGGGGACCTGAAGTCTCTGACACTGAAGACAGGCTCCCTATCATTGGAATGTGCACGTTACTACACGGC
GCAAATGATCGATGCAATTAACCTGATGCATGAAGCGGGTGTGGCACACCGAGATATAAAACCGGAGAACTGTTT
GCTCGACAAATCTATGCGAATTAAGATCGCGGACTTTGGCTCTGCATATGTGACTTCAACGCCACTGTCGAGTAA
GTCTTGTAACTTCCAGATATATCGCCACAGAATTGAGCACCCCATTCAGCTCCCAAAACAAATACCTTTGTGGGC
ACAGCTGCGTTCTTGTCGCCCGAGGTGCTTCTGCGACAGGAAGCTAACCCTAGAGGGTACGCTTGTCTATCGCAA
CCTATAGGAAACCGCTGAATGTGCTTTCAGGCCTGATCTTTGGGCAGTGGGCGCTTGTCTATTCTTTTATCTATT
TGGGACGTACCCTTTCTCAGCGATGACCGACTACTTGATCATGGAACGTATCAAGAAGTTGGACTACAAGATCCC
TGAAGGTTGCGATCCTGACGCAGCTGATTTAATCAAGCGCCTATTAGTATGTTCTAACTGGACCAATTGATCAAG
TCAAGCCTAACCCAAGTTCAGGTTCATCACCCCCAGGAAAGACTCGGTGTGCCGCCGAACTCGTCAATAGACGAA
CTCCGCCAACACCCCTTCTTTGTAGGGAGCAGGGAGGATGGCAAGAGTGGGCATATCGATTGGGACACGATCTGG
ACGGTGCCAGCACCAGAGATAAAACCAGGTCCTTTCAAGTCTAACCCACGAAGTTCACGGGCGGAGAGTGACAAG
GCGGAGGAGGAACTGTGGGCCAAATTCGAGGAGATCCATTTGATTGAGGATGAAGGGAGAATTTAGATGATTTTT
CCCTAGACTCGCTTCTTCTTGGATAGAGCGGGTCATCATTCACGCCACTATCTTTCAACTCCTCGTGTAATGTTT
TGTATATAGCACACTTCACACTCGGGACCGACCTTGTGTTTTCTCAAGTTTTTCCTGTC
Length 1484