CopciAB_427108
Coprinopsis cinerea A43mutB43mut pab1-1 #326

General data

Systematic name CopciAB_427108 Strain Coprinopsis cinerea Okayama 7
Standard name - Synonyms 427108
Uniprot id Functional description Phosphotransferase enzyme family
Location scaffold_4:556811..557965 Strand -
Gene length (nt) 1155 Transcript length (nt) 1099
CDS length (nt) 864 Protein length (aa) 287

Reciprocal best hits in model fungi

Strain name Gene / Protein name
Aspergillus nidulans AN6463

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
Agrocybe aegerita Agrae_CAA7268380 46.1 1.063E-61 213
Hypsizygus marmoreus strain 51987-8 Hypma_RDB22255 44.3 6.798E-59 205
Auricularia subglabra Aurde3_1_1205238 34.9 4.397E-33 130
Agaricus bisporus var. burnettii JB137-S8 Agabi_varbur_1_79892 33.4 1.038E-31 125
Flammulina velutipes Flave_chr09AA00234 35.5 2.804E-30 121
Agaricus bisporus var bisporus (H97) Agabi_varbisH97_2_146177 33.1 1.066E-29 119
Lentinula edodes NBRC 111202 Lenedo1_1041440 30.8 7.313E-26 108
Lentinula edodes W1-26 v1.0 Lentinedodes1_13346 32.7 7.257E-26 108
Lentinula edodes B17 Lened_B_1_1_9718 32.2 1.254E-25 107
Schizophyllum commune H4-8 Schco3_2673146 29 1.823E-24 104
Ganoderma sp. 10597 SS1 v1.0 Gansp1_70463 29.4 1.488E-23 101
Pleurotus eryngii ATCC 90797 Pleery1_1594566 27.7 1.539E-17 83
Pleurotus ostreatus PC9 PleosPC9_1_51069 27.7 2.637E-16 79
Grifola frondosa Grifr_OBZ69137 28.3 6.127E-16 78
Pleurotus ostreatus PC15 PleosPC15_2_7262 27 1.648E-9 58

Expression

Name Summary Attribution Assay type
Carbon metabolism Transcriptional changes along alternative morphogenetic paths of C. cinerea Xie et al. 2020 RNA-Seq
Sample Mean cpm SD cpm Se of mean
sclerotia 10.7999 1.1519 0.6651
oidia 11.8552 1.5092 0.8713
vegetative_mycelium 11.8137 1.05 0.6062
primordia 7.7534 1.3108 0.7568
hyphal_knot 8.0625 0.9463 0.5463
young_fruiting_body 5.4777 2.1022 1.2137
Complex carbon sources 1 (long incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control - glucose 8.1018 0.8853 0.5111
Wheat bran 15.0102 1.3878 0.8013
Horse manure 11.6401 2.4783 1.4308
Oak leaves 7.2739 1.7706 1.0223
Hay 11.1312 0.5512 0.3182
Corn stalk 9.2839 1.0238 0.5911
Pectine 10.8978 0.5206 0.3006
Microcrystalline cellulose 13.1122 2.9964 1.73
Xylose 5.6917 0.5886 0.3398
Cellobiose 4.8843 0.3903 0.2253
Lignin 13.7138 1.7508 1.0108
Apple peels 7.2684 0.7532 0.4348
Coprinopsis challenged with bacteria Transcriptional response to Bacillus subtilis and Escherichia coli. Kombrink et al. 2018 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control 11.0127 0.6406 0.3698
Bsubtilis 8.5205 1.1285 0.6515
Ecoli 8.0744 0.3671 0.2119
Early development 1 Time series expression profiling of basidiospore and oidium germination Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
BS 0h 3.1051 0.495 0.2858
BS 4h 5.2246 1.25 0.7217
BS 8h 8.1082 1.0412 0.6011
BS 12h 11.0672 2.1644 1.2496
Oidia 0 h 10.4816 2.0235 1.1683
Oidia 18 h 4.4805 0.368 0.2125
Sclerotia 5.673 4.7575 2.7468
Early development 2 Time series expression profiling of mycelial growth, light induction and fruiting body initiation. Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
DM 12h 8.8212 1.2741 0.7356
DM 36h 6.3631 1.8254 1.0539
DM 60h 6.697 2.8941 1.6709
DM 84h 4.0075 0.3776 0.218
DM 108h 3.9327 0.9863 0.5695
DM 132h 4.8389 1.7836 1.0297
DM 156hAE 2.1464 0.7119 0.411
ELI1hAE 4.3151 0.2174 0.1255
ELI2hAE 6.3965 0.4956 0.2861
LI2hAE 5.5164 0.6288 0.363
LI6hAE 4.9241 1.1909 0.6876
LI12hAE 4.357 1.6108 0.93
LI18hAE 4.5773 3.2865 1.8975
LI 24hAE 3.329 1.4116 0.815
DM 156hAM 5.1738 2.0471 1.1819
ELI1hAM 8.6552 0.8191 0.4729
ELI2hAM 10.3874 1.6553 0.9557
LI2hAM 9.7284 4.1702 2.4077
LI6hAM 6.0143 1.9028 1.0986
LI12hAM 4.7469 1.2781 0.7379
LI18hAM 3.8814 1.0731 0.6196
LI 24hAM 2.1065 0.9292 0.5365
LI 24hHK 4.4102 1.0453 0.6035
L/D 6h 2.7179 0.9388 0.542
L/D 12h 3.7115 3.0179 1.7424
L/D 18h 3.6877 0.9273 0.5354
L/D 24h 5.0362 1.8159 1.0484
Fruiting body development RNA-Seq analysis of fruiting body development Krizsan et al. 2019 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Vegetative mycelium 7.6892 0.6616 0.382
Hyphal knots 6.3028 1.7363 1.0024
Primordium 1 6.3799 2.4083 1.3904
Primordium 2 6.7596 2.2566 1.3028
Young Fruiting body cap 0.6432 0.5201 0.3003
Younf fruiting body gill 9.0259 2.9622 1.7102
Young fruiting body stipe 0.7303 0.4709 0.2719
Mature fruiting body cap_gill 0.9487 0.6148 0.355
Mature fruiting body stipe 0.4379 0.1854 0.1071
Nitrogen sources (12h incubation) Expression profiling on diverse nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Complete medium - control 4.3325 0.4914 0.2837
NH4NO3 8.5665 1.6033 0.9257
Proline 7.1187 2.3595 1.3623
Tryptophan 8.9967 3.7834 2.1843
Isoleucin 6.7325 0.3098 0.1788
Arginine 8.8247 0.836 0.4827
Metionine 7.7742 0.7783 0.4493
NaNO3 10.3622 0.3019 0.1743
Plant biomass (12h incubation) Expression profiling on diverse plant biomasses as carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 4.3325 0.4914 0.2837
Citrus peel 8.8852 0.8526 0.4922
Poplar leaves 6.8394 0.1456 0.084
Typha leaves 6.3564 1.8919 1.0923
Overwintered Salix leaves 6.4278 0.6131 0.354
Reed flowering 6.9067 2.2877 1.3208
Tigernut 8.2554 0.4703 0.2715
Energy cane 5.1177 0.7387 0.4265
Guar gum 5.3045 0.8181 0.4723
Apple peels 9.6219 1.5688 0.9058
Cellobiose 11.1496 2.6683 1.5406
Corn stalk 6.9707 0.6124 0.3536
Horse manure 7.2731 3.0207 1.744
Lignin 11.7152 0.8911 0.5145
Microcrystalline cellulose 7.775 1.7833 1.0296
Oak leaves 7.2597 1.6278 0.9398
Pectin esterified 11.3395 2.6215 1.5135
Poplar sawdust 6.9046 1.04 0.6005
Wheat bran 10.3581 2.8199 1.6281
Chlamydomonas reinhardtii 5.2761 0.5776 0.3335
Vertatryl alcohol 13.6489 2.5128 1.4508
Furfural 14.3008 2.3443 1.3535
Autoclaved mycelium 7.7917 0.9464 0.5464
Simple and complex carbon and nitrogen sources Expression profiling on diverse complex carbon and nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 17.2447 2.5088 1.4484
Ribose 11.4695 1.2769 0.7372
Mannose 13.1638 0.971 0.6866
Fructose 11.2118 1.8238 1.053
Arabinose 9.0967 1.8558 1.0715
Xylose 11.5574 0.5154 0.2976
Galacturonic acid 11.5034 2.71 1.5646
Rhamnogalacturonan 12.4372 2.0454 1.1809
Pectin esterified 11.6597 0.6356 0.367
Polygalacturonic acid 11.0281 2.1095 1.2179
Sodium acetate 10.263 1.0769 0.6217
No nitrogen 13.0067 0.6811 0.3932
BSA 8.9475 0.8361 0.4827
Glutamine 11.1143 0.7895 0.4558
No phosphate 16.3098 2.0956 1.2099
No carbon 8.6641 1.0493 0.7419
No sulphur 13.1345 0.9613 0.555
Simple and complex carbon sources (12h incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 4.3325 0.4914 0.2837
Amylose 6.0983 0.7635 0.4408
Fucose 5.8694 0.9311 0.5376
Galactose 6.3072 0.7192 0.4152
Lactose 7.151 1.6947 0.9784
Maltose 7.2154 0.4628 0.2672
Mannitol 7.4586 1.0418 0.6015
Rhamnose 6.6424 0.8485 0.4899
Sorbitol 7.3732 2.0062 1.1583
Trehalose 6.7338 0.0209 0.0121
Glycerol 5.6133 0.6712 0.3875
Glucuronic acid 5.6281 1.0659 0.6154
Arabinan 7.4168 0.9841 0.5682
Galactan 6.0082 0.1884 0.1088
Galactomannan 6.4113 2.1154 1.2213
Glucan 4.9872 1.076 0.6212
Xylan 6.9058 1.9582 1.1306
Xyloglucan 5.1808 0.6153 0.3553
Arabinogalactan 5.4883 0.3899 0.2251
Pectin 3.5838 0.6195 0.3577
Rhamnogalacturonan 3.9612 1.2025 0.6943
Polygalacturonic acid 5.9943 0.3784 0.2184
Mannan 5.8621 0.6342 0.3662
Amylopectin 8.0637 1.4945 0.8629
Inulin 7.2012 0.5926 0.3421
BSA 5.2211 1.5857 0.9155
Starvation induced by water agar transfer Expression profiling on starvation induced by transfer to water agar Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Control 6.697 2.8941 1.6709
2h WAT 5.3076 0.5651 0.3263
4h WAT 4.5391 1.2467 0.7198
8h WAT 4.1484 2.4869 1.4358
16h WAT 2.4984 1.9395 1.1197
24h WAT 3.1307 1.0815 0.6244
WAT hyphal knot -30h 7.1494 2.2999 1.3278
WAT hyphal knot -22h 5.5816 0.4996 0.2885
WAT hyphal knot -15h 4.6308 0.3621 0.209
WAT hyphal knot -7.5h 4.5316 0.2019 0.1166
WAT hyphal knot 4.9815 2.2057 1.2735
WAT hyphal knot +7.5h 5.207 2.6128 1.5085
Straw time series Time series expression profiling on straw as a carbon source Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 10.5511 1.5918 0.919
Straw 3h 10.7804 1.5345 0.8859
Straw 6h 9.8697 1.5547 0.8976
Straw 12h 9.2378 1.0089 0.5825
Straw 24h 8.8016 2.3449 1.3538
Stress conditions 1 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 5.4282 1.1834 0.6832
Frost (-20C, 30min) 3.744 0.2423 0.1399
Heat shock (47C, 2h) 5.9016 0.9178 0.5299
High CO2 4.4978 0.9457 0.546
Drought (4% agar, 12h) 3.9626 1.8041 1.0416
Oxidative (1mM H2O2, 3h) 7.27 3.9321 2.2702
Acidic (pH4, 3h) 6.5216 1.2278 0.7089
Alkaline (pH9, 3h) 5.4763 0.4089 0.2361
Osmotic (sorbitol 2h) 6.4044 0.6968 0.4023
CongoRed (3h) 5.2604 1.3998 0.8082
Cobalt chloride control 3.1219 0.6523 0.3766
Cobalt chloride 2mM 2.3367 0.6876 0.397
Stress conditions 2 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 5.7006 1.6137 0.9317
Cold stimulation 6.2562 2.1819 1.2597
Scratched surface 7.5147 0.4411 0.2547
Ca2+, 200mM, 24h 5.4017 1.2616 0.7284
Cu2+, 2mM, 6h 5.9091 2.8151 1.6253
Voriconazole 5.6768 2.1537 1.2434
Trichoderma interaction, early 6.902 3.3397 1.9282
Trichoderma interaction 60h 4.3537 6.0751 3.5074
Cobalt chloride 2mM repeat 3.8977 1.0696 0.6175
Hypoxia 8.5466 4.3606 2.5176
Hypoxia control 4.7465 0.4259 0.2459
Protoplastation control 1.9053 0.0717 0.0507
Protoplastation 3.5h 2.6231 2.0646 1.4599
Protoplastation 1.5h 0 0 0

General data

Systematic name -
Protein id CopciAB_427108.T0
Description Phosphotransferase enzyme family

Annotation summary

0 100 200 287

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
CDD cd05120 APH_ChoK_like - 51 247
Pfam PF01636 Phosphotransferase enzyme family IPR002575 77 269

SignalP

Prediction Start End Score
No records

Transmembrane domains

Domain n Start End Length
No records

InterPro

Accession Description
IPR011009 Protein kinase-like domain superfamily
IPR002575 Aminoglycoside phosphotransferase

GO

Go id Term Ontology
No records

KEGG

KEGG Orthology
No records

EggNOG

COG category Description
S Phosphotransferase enzyme family

CAZy

Class Family Subfamily
No records

Transcription factor

Group
No records

Conservation of CopciAB_427108 across fungi.

Arrow shows the origin of gene family containing CopciAB_427108.

Protein

Sequence id CopciAB_427108.T0
Sequence >CopciAB_427108.T0
MPTTNTERDKRDTSDANSSSTPARPSPPVPELTGLKLFKHKLNCDFRELLRPLGFKDTRYIKSGPHVRLQEALTM
EFIAQNTTIRVPRVLDVFSIRGTVHIVQERIHGPVLEDVWHRLSAEEQRSAMLQVKDCFDQLRALQPPHPERVQA
VDGSGLIDSRVEKGEWGPFENHAAFHRFLNHDIYRAQPEKYSRMQDALTKIKDKQYKSVFSHGDFGPHNLIWRDG
TIFVIDWERSGWFPEYYDFTRAHTARGDMKDWWTKFEEVVDRYGDELELEIRFCEYFESWIL
Length 287

Coding

Sequence id CopciAB_427108.T0
Sequence >CopciAB_427108.T0
ATGCCCACCACGAATACTGAACGGGATAAGAGGGATACCTCTGATGCCAACTCCTCGAGCACGCCAGCACGTCCG
TCGCCTCCAGTTCCTGAGCTTACGGGCTTAAAGCTGTTCAAACACAAACTCAACTGTGACTTTAGGGAGCTCTTG
CGCCCATTGGGGTTCAAAGACACGCGATATATCAAATCCGGCCCTCATGTGCGCCTCCAAGAGGCTTTGACAATG
GAATTCATCGCACAAAACACTACAATCCGCGTCCCCCGGGTTCTGGATGTCTTTTCCATTCGCGGAACTGTGCAC
ATAGTCCAGGAACGCATCCATGGGCCTGTTCTCGAGGATGTGTGGCACCGTCTCTCCGCGGAAGAACAACGTAGC
GCTATGCTGCAGGTGAAGGACTGTTTCGATCAACTGCGTGCGCTCCAGCCCCCGCACCCAGAACGGGTGCAAGCC
GTGGACGGGTCGGGGCTCATTGACAGTCGAGTGGAAAAGGGGGAATGGGGACCTTTCGAGAACCATGCGGCCTTC
CATCGGTTCCTAAACCACGACATCTATCGGGCTCAGCCCGAGAAATATTCTCGTATGCAGGACGCACTGACGAAG
ATCAAGGATAAACAGTACAAGTCCGTCTTCTCTCATGGCGATTTCGGACCACATAACCTCATTTGGAGGGACGGT
ACGATCTTTGTTATCGACTGGGAGAGGTCAGGTTGGTTTCCAGAGTATTATGATTTTACAAGGGCGCATACTGCT
CGTGGTGATATGAAAGATTGGTGGACTAAGTTCGAGGAGGTGGTGGATAGATATGGCGACGAGTTGGAGCTCGAG
ATTCGATTTTGCGAGTACTTTGAATCGTGGATATTATAG
Length 864

Transcript

Sequence id CopciAB_427108.T0
Sequence >CopciAB_427108.T0
GCGCTTGCTCCCATACCACCATCAAAGACCTTAGTGCTGCACACTCGCATGCCCACCACGAATACTGAACGGGAT
AAGAGGGATACCTCTGATGCCAACTCCTCGAGCACGCCAGCACGTCCGTCGCCTCCAGTTCCTGAGCTTACGGGC
TTAAAGCTGTTCAAACACAAACTCAACTGTGACTTTAGGGAGCTCTTGCGCCCATTGGGGTTCAAAGACACGCGA
TATATCAAATCCGGCCCTCATGTGCGCCTCCAAGAGGCTTTGACAATGGAATTCATCGCACAAAACACTACAATC
CGCGTCCCCCGGGTTCTGGATGTCTTTTCCATTCGCGGAACTGTGCACATAGTCCAGGAACGCATCCATGGGCCT
GTTCTCGAGGATGTGTGGCACCGTCTCTCCGCGGAAGAACAACGTAGCGCTATGCTGCAGGTGAAGGACTGTTTC
GATCAACTGCGTGCGCTCCAGCCCCCGCACCCAGAACGGGTGCAAGCCGTGGACGGGTCGGGGCTCATTGACAGT
CGAGTGGAAAAGGGGGAATGGGGACCTTTCGAGAACCATGCGGCCTTCCATCGGTTCCTAAACCACGACATCTAT
CGGGCTCAGCCCGAGAAATATTCTCGTATGCAGGACGCACTGACGAAGATCAAGGATAAACAGTACAAGTCCGTC
TTCTCTCATGGCGATTTCGGACCACATAACCTCATTTGGAGGGACGGTACGATCTTTGTTATCGACTGGGAGAGG
TCAGGTTGGTTTCCAGAGTATTATGATTTTACAAGGGCGCATACTGCTCGTGGTGATATGAAAGATTGGTGGACT
AAGTTCGAGGAGGTGGTGGATAGATATGGCGACGAGTTGGAGCTCGAGATTCGATTTTGCGAGTACTTTGAATCG
TGGATATTATAGTAGATGGTCAGATTCCATAGGCGCGTAGCTAGACTTAGCAACGTCAAGACCTACAATATGATG
TTCGAACCTATGTATATACACTGTATTGTATGTGTGGCAGCCGTTACTTCTTATCAACTACACGTTCCTCGTTCG
AGAATCGACACACAGATTCCACGCCCTTAATATGGCGGCAGTCGCAATT
Length 1099

Gene

Sequence id CopciAB_427108.T0
Sequence >CopciAB_427108.T0
GCGCTTGCTCCCATACCACCATCAAAGACCTTAGTGCTGCACACTCGCATGCCCACCACGAATACTGAACGGGAT
AAGAGGGATACCTCGTATGTCAACTCACTGCTGAATTACAAGAGAAACCATTGCCTGACTGCCAACCTAGTGATG
CCAACTCCTCGAGCACGCCAGCACGTCCGTCGCCTCCAGTTCCTGAGCTTACGGGCTTAAAGCTGTTCAAACACA
AACTCAACTGTGACTTTAGGGAGCTCTTGCGCCCATTGGGGTTCAAAGACACGCGATATATCAAATCCGGCCCTC
ATGTGCGCCTCCAAGAGGCTTTGACAATGGAATTCATCGCACAAAACACTACAATCCGCGTCCCCCGGGTTCTGG
ATGTCTTTTCCATTCGCGGAACTGTGCACATAGTCCAGGAACGCATCCATGGGCCTGTTCTCGAGGATGTGTGGC
ACCGTCTCTCCGCGGAAGAACAACGTAGCGCTATGCTGCAGGTGAAGGACTGTTTCGATCAACTGCGTGCGCTCC
AGCCCCCGCACCCAGAACGGGTGCAAGCCGTGGACGGGTCGGGGCTCATTGACAGTCGAGTGGAAAAGGGGGAAT
GGGGACCTTTCGAGAACCATGCGGCCTTCCATCGGTTCCTAAACCACGACATCTATCGGGCTCAGCCCGAGAAAT
ATTCTCGTATGCAGGACGCACTGACGAAGATCAAGGATAAACAGTACAAGTCCGTCTTCTCTCATGGCGATTTCG
GACCACATAACCTCATTTGGAGGGACGGTACGATCTTTGTTATCGACTGGGAGAGGTCAGGTTGGTTTCCAGAGT
ATTATGATTTTACAAGGGCGCATACTGCTCGTGGTGATATGAAAGATTGGTGGACTAAGTTCGAGGAGGTGGTGG
ATAGATATGGCGACGAGTTGGAGCTCGAGATTCGATTTTGCGAGTACTTTGAATCGTGGATATTATAGTAGATGG
TCAGATTCCATAGGCGCGTAGCTAGACTTAGCAACGTCAAGACCTACAATATGATGTTCGAACCTATGTATATAC
ACTGTATTGTATGTGTGGCAGCCGTTACTTCTTATCAACTACACGTTCCTCGTTCGAGAATCGACACACAGATTC
CACGCCCTTAATATGGCGGCAGTCGCAATT
Length 1155