CopciAB_428994
Coprinopsis cinerea A43mutB43mut pab1-1 #326

General data

Systematic name CopciAB_428994 Strain Coprinopsis cinerea Okayama 7
Standard name - Synonyms 428994
Uniprot id Functional description Protein kinase subdomain-containing protein PKL ccin3
Location scaffold_8:123268..124654 Strand +
Gene length (nt) 1387 Transcript length (nt) 1233
CDS length (nt) 990 Protein length (aa) 329

Reciprocal best hits in model fungi

Strain name Gene / Protein name

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
0

Expression

Name Summary Attribution Assay type
Carbon metabolism Transcriptional changes along alternative morphogenetic paths of C. cinerea Xie et al. 2020 RNA-Seq
Sample Mean cpm SD cpm Se of mean
sclerotia 4.0057 0.814 0.4699
oidia 7.559 0.928 0.5358
vegetative_mycelium 7.5852 0.7261 0.4192
primordia 3.8035 0.7442 0.4296
hyphal_knot 6.3427 0.6061 0.3499
young_fruiting_body 0.664 0.2304 0.133
Complex carbon sources 1 (long incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control - glucose 1.8369 0.1609 0.0929
Wheat bran 8.1585 0.2204 0.1273
Horse manure 8.8134 4.2045 2.4275
Oak leaves 7.9775 0.1323 0.0764
Hay 8.0393 2.1873 1.2628
Corn stalk 10.6798 1.5099 0.8718
Pectine 9.5964 1.234 0.7124
Microcrystalline cellulose 2.4594 0.2961 0.1709
Xylose 2.5611 0.63 0.3637
Cellobiose 2.3237 0.5612 0.324
Lignin 3.5417 2.9896 1.7261
Apple peels 6.4412 0.6866 0.3964
Coprinopsis challenged with bacteria Transcriptional response to Bacillus subtilis and Escherichia coli. Kombrink et al. 2018 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control 7.5843 0.8743 0.5048
Bsubtilis 6.9724 0.1566 0.0904
Ecoli 4.979 0.2229 0.1287
Early development 1 Time series expression profiling of basidiospore and oidium germination Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
BS 0h 0.4065 0.1768 0.1021
BS 4h 4.5488 0.7389 0.4266
BS 8h 2.7237 0.4715 0.2722
BS 12h 1.935 0.1503 0.0868
Oidia 0 h 27.7342 3.7334 2.1555
Oidia 18 h 6.081 1.4511 0.8378
Sclerotia 1.2931 1.6296 0.9408
Early development 2 Time series expression profiling of mycelial growth, light induction and fruiting body initiation. Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
DM 12h 5.8509 1.2711 0.7338
DM 36h 4.5772 0.7309 0.422
DM 60h 5.9504 0.8487 0.49
DM 84h 5.4741 1.4374 0.8299
DM 108h 5.5797 1.1061 0.6386
DM 132h 6.2695 1.7888 1.0328
DM 156hAE 3.3405 0.3074 0.1775
ELI1hAE 7.5864 2.9783 1.7195
ELI2hAE 9.1022 1.0942 0.6317
LI2hAE 10.1419 0.9984 0.5765
LI6hAE 8.4509 0.8566 0.4945
LI12hAE 10.4046 0.8618 0.4976
LI18hAE 13.6641 3.3911 1.9579
LI 24hAE 4.7135 0.3054 0.1763
DM 156hAM 5.1057 1.4464 0.8351
ELI1hAM 10.3611 2.335 1.3481
ELI2hAM 10.6076 3.076 1.7759
LI2hAM 8.1332 0.8021 0.4631
LI6hAM 8.8106 2.2382 1.2922
LI12hAM 14.4025 1.1826 0.6828
LI18hAM 16.6385 7.9196 4.5724
LI 24hAM 3.5068 1.4268 0.8238
LI 24hHK 11.5435 4.7967 2.7694
L/D 6h 9.1061 3.9543 2.283
L/D 12h 6.3183 2.5369 1.4647
L/D 18h 7.0214 2.1015 1.2133
L/D 24h 7.5877 1.8938 1.0934
Fruiting body development RNA-Seq analysis of fruiting body development Krizsan et al. 2019 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Vegetative mycelium 3.7447 1.3005 0.7508
Hyphal knots 4.1602 0.1893 0.1093
Primordium 1 6.0448 1.5303 0.8835
Primordium 2 5.1287 1.2907 0.7452
Young Fruiting body cap 2.5633 1.0431 0.6023
Younf fruiting body gill 3.3539 1.644 0.9492
Young fruiting body stipe 5.9247 2.4825 1.4332
Mature fruiting body cap_gill 0.3333 0.1963 0.1133
Mature fruiting body stipe 1.4482 0.2849 0.1645
Nitrogen sources (12h incubation) Expression profiling on diverse nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Complete medium - control 8.1767 0.4776 0.2757
NH4NO3 4.8501 0.2015 0.1163
Proline 5.6948 1.4657 0.8462
Tryptophan 4.6946 0.9303 0.5371
Isoleucin 4.5716 0.4706 0.2717
Arginine 4.3633 0.8769 0.5063
Metionine 4.5344 1.3654 0.7883
NaNO3 4.3965 0.387 0.2234
Plant biomass (12h incubation) Expression profiling on diverse plant biomasses as carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 8.1767 0.4776 0.2757
Citrus peel 5.6072 1.6799 0.9699
Poplar leaves 4.6901 1.7505 1.0107
Typha leaves 4.3462 0.6877 0.3971
Overwintered Salix leaves 5.1606 0.8771 0.5064
Reed flowering 5.0708 0.8975 0.5182
Tigernut 5.513 0.7043 0.4067
Energy cane 6.0745 1.3802 0.7969
Guar gum 6.5533 0.3268 0.1887
Apple peels 8.4632 0.3795 0.2191
Cellobiose 11.5767 1.5637 0.9028
Corn stalk 7.5923 2.2095 1.2757
Horse manure 9.9502 5.0503 2.9158
Lignin 7.7982 4.0258 2.3243
Microcrystalline cellulose 10.5724 2.0699 1.195
Oak leaves 7.1372 1.1963 0.6907
Pectin esterified 7.8883 0.9081 0.5243
Poplar sawdust 10.5372 1.126 0.6501
Wheat bran 9.6768 1.3791 0.7962
Chlamydomonas reinhardtii 6.9786 1.4731 0.8505
Vertatryl alcohol 3.5459 0.5039 0.2909
Furfural 3.6243 1.1523 0.6653
Autoclaved mycelium 5.4229 1.3759 0.7944
Simple and complex carbon and nitrogen sources Expression profiling on diverse complex carbon and nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 11.5748 1.6099 0.9295
Ribose 7.5621 1.1046 0.6377
Mannose 9.006 1.995 1.4107
Fructose 12.3796 2.4378 1.4075
Arabinose 8.6406 1.4556 0.8404
Xylose 10.3459 1.3177 0.7608
Galacturonic acid 8.8978 1.988 1.1478
Rhamnogalacturonan 9.0342 1.1222 0.6479
Pectin esterified 11.2482 1.636 0.9446
Polygalacturonic acid 11.2571 0.852 0.4919
Sodium acetate 8.3715 1.6864 0.9737
No nitrogen 15.2302 2.9667 1.7128
BSA 12.156 1.7724 1.0233
Glutamine 11.694 1.5266 0.8814
No phosphate 9.98 1.612 0.9307
No carbon 6.3639 0.8856 0.6262
No sulphur 8.2482 1.71 0.9873
Simple and complex carbon sources (12h incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 8.1767 0.4776 0.2757
Amylose 5.8114 0.0601 0.0347
Fucose 6.8708 1.5032 0.8679
Galactose 7.0682 0.3496 0.2019
Lactose 5.9104 0.7577 0.4375
Maltose 4.8671 0.9208 0.5316
Mannitol 5.7337 0.6211 0.3586
Rhamnose 5.8114 0.8982 0.5186
Sorbitol 8.0695 0.4815 0.278
Trehalose 5.0354 0.5153 0.2975
Glycerol 6.1831 0.5696 0.3288
Glucuronic acid 5.6655 0.2936 0.1695
Arabinan 6.9668 0.3077 0.1777
Galactan 6.0022 0.531 0.3066
Galactomannan 7.0798 1.2886 0.744
Glucan 7.366 1.6003 0.9239
Xylan 6.4054 0.7725 0.446
Xyloglucan 5.7979 1.69 0.9757
Arabinogalactan 6.2775 1.5204 0.8778
Pectin 5.9802 0.8267 0.4773
Rhamnogalacturonan 4.2091 1.1603 0.6699
Polygalacturonic acid 6.5737 1.4423 0.8327
Mannan 5.6829 1.2934 0.7468
Amylopectin 5.7767 0.8042 0.4643
Inulin 5.3984 0.0944 0.0545
BSA 5.6125 0.674 0.3891
Starvation induced by water agar transfer Expression profiling on starvation induced by transfer to water agar Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Control 5.9504 0.8487 0.49
2h WAT 4.6378 1.7778 1.0264
4h WAT 7.9062 2.4083 1.3904
8h WAT 6.1689 1.002 0.5785
16h WAT 3.0757 0.969 0.5594
24h WAT 3.0245 0.4655 0.2688
WAT hyphal knot -30h 8.5077 1.2278 0.7089
WAT hyphal knot -22h 4.172 0.4037 0.2331
WAT hyphal knot -15h 5.9176 0.809 0.4671
WAT hyphal knot -7.5h 5.0656 2.2652 1.3078
WAT hyphal knot 6.2451 1.8091 1.0445
WAT hyphal knot +7.5h 4.7146 1.766 1.0196
Straw time series Time series expression profiling on straw as a carbon source Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 9.4747 0.6583 0.38
Straw 3h 5.9693 0.7096 0.4097
Straw 6h 5.286 0.3245 0.1874
Straw 12h 7.9398 2.0614 1.1901
Straw 24h 6.5171 1.0104 0.5834
Stress conditions 1 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 7.9723 3.3409 1.9289
Frost (-20C, 30min) 6.5986 0.5227 0.3018
Heat shock (47C, 2h) 0.9847 0.8553 0.4938
High CO2 5.8727 0.6606 0.3814
Drought (4% agar, 12h) 7.3382 2.8327 1.6355
Oxidative (1mM H2O2, 3h) 5.7999 0.8847 0.5108
Acidic (pH4, 3h) 4.0015 1.4053 0.8113
Alkaline (pH9, 3h) 4.7823 0.9151 0.5284
Osmotic (sorbitol 2h) 2.2785 1.3526 0.7809
CongoRed (3h) 4.3931 0.862 0.4977
Cobalt chloride control 8.7745 2.5443 1.469
Cobalt chloride 2mM 4.9189 1.7078 0.986
Stress conditions 2 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 6.8452 2.2476 1.2977
Cold stimulation 8.0112 2.1446 1.2382
Scratched surface 9.2648 0.5612 0.324
Ca2+, 200mM, 24h 3.692 1.0095 0.5829
Cu2+, 2mM, 6h 4.4887 1.8905 1.0915
Voriconazole 7.3353 2.1962 1.268
Trichoderma interaction, early 7.7412 2.2429 1.295
Trichoderma interaction 60h 3.1145 4.9614 2.8645
Cobalt chloride 2mM repeat 3.687 0.3871 0.2235
Hypoxia 3.3253 0.4966 0.2867
Hypoxia control 3.4839 0.8938 0.516
Protoplastation control 6.6396 1.5214 1.0758
Protoplastation 3.5h 3.6841 0.2753 0.1947
Protoplastation 1.5h 4.9428 4.0609 2.8715

General data

Systematic name -
Protein id CopciAB_428994.T0
Description Protein kinase subdomain-containing protein PKL ccin3

Annotation summary

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
No records

SignalP

Prediction Start End Score
No records

Transmembrane domains

Domain n Start End Length
No records

InterPro

Accession Description
IPR011009 Protein kinase-like domain superfamily

GO

Go id Term Ontology
No records

KEGG

KEGG Orthology
No records

EggNOG

COG category Description
G Protein kinase subdomain-containing protein PKL ccin3

CAZy

Class Family Subfamily
No records

Transcription factor

Group
No records

Conservation of CopciAB_428994 across fungi.

Arrow shows the origin of gene family containing CopciAB_428994.

Protein

Sequence id CopciAB_428994.T0
Sequence >CopciAB_428994.T0
MQQMFSTLLIHDCGTADGYLITITLKASPSFPGGIWYKEDWHEPVPATSAPKDVSNLDGTLELRLVRRISEGRIG
VTYVAEVVSATRKCTDVRSTLPPTLCLKFAKPEFSRSLAREAWFYEQLDSLQGISVPISFGFFASTAAEQRHFPD
VEFEPWRNRKVLFKDTDKIPHDIDRYASPDWLPDDVPEYYKRERFEDPPSKCNSPWYKWSRLDDNPTISVLVLEL
LGEACTGIKTAADKQAIQNVMDDLAEVGVMHGNLTPWNTLAFKPQPHKEARRCPRHNVVHPWRVIDFDRSRMADP
KNLCFLGKRHITDTDDIMDDAAVYFEFWD
Length 329

Coding

Sequence id CopciAB_428994.T0
Sequence >CopciAB_428994.T0
ATGCAGCAGATGTTCTCGACACTGCTGATTCACGACTGCGGTACCGCCGACGGGTATCTGATCACCATTACTCTC
AAAGCCTCGCCCTCGTTCCCTGGTGGCATCTGGTATAAGGAAGACTGGCATGAACCCGTTCCTGCCACAAGTGCA
CCGAAGGATGTCTCCAACCTTGACGGGACCCTCGAGCTCAGGCTAGTCAGGCGCATCTCAGAGGGCCGCATTGGC
GTAACTTACGTGGCAGAAGTCGTCTCTGCAACGCGCAAATGCACTGACGTCCGCTCAACTCTACCGCCCACTCTC
TGCCTCAAATTCGCAAAGCCCGAATTCAGTCGTAGCCTGGCGCGAGAGGCTTGGTTCTACGAACAACTGGATTCG
CTTCAGGGCATCTCCGTACCCATTTCCTTCGGTTTCTTCGCATCCACTGCAGCGGAGCAGCGCCACTTTCCCGAT
GTCGAGTTCGAGCCCTGGAGGAATCGAAAGGTTTTGTTCAAGGACACAGACAAGATCCCACATGACATCGACCGA
TATGCATCTCCGGACTGGTTACCCGACGATGTGCCCGAATATTACAAGCGAGAGAGATTCGAGGACCCTCCCAGC
AAATGTAATTCACCTTGGTACAAGTGGAGTCGCCTTGACGACAATCCAACTATCTCTGTACTTGTGCTCGAGCTA
CTCGGGGAAGCCTGCACCGGGATAAAGACCGCTGCCGACAAACAGGCGATCCAGAATGTAATGGATGATTTGGCT
GAAGTCGGGGTGATGCATGGCAACCTCACTCCTTGGAACACGCTCGCATTCAAGCCTCAACCTCACAAAGAAGCA
CGACGATGCCCTCGACACAATGTAGTCCATCCCTGGAGAGTCATCGACTTTGACCGTTCGAGGATGGCAGATCCC
AAGAACCTGTGCTTTCTTGGCAAGCGTCACATTACCGACACCGACGACATTATGGATGATGCAGCAGTGTACTTT
GAATTTTGGGACTGA
Length 990

Transcript

Sequence id CopciAB_428994.T0
Sequence >CopciAB_428994.T0
AACCACCACGTCCTTACACCATGCAGCAGATGTTCTCGACACTGCTGATTCACGACTGCGGTACCGCCGACGGGT
ATCTGATCACCATTACTCTCAAAGCCTCGCCCTCGTTCCCTGGTGGCATCTGGTATAAGGAAGACTGGCATGAAC
CCGTTCCTGCCACAAGTGCACCGAAGGATGTCTCCAACCTTGACGGGACCCTCGAGCTCAGGCTAGTCAGGCGCA
TCTCAGAGGGCCGCATTGGCGTAACTTACGTGGCAGAAGTCGTCTCTGCAACGCGCAAATGCACTGACGTCCGCT
CAACTCTACCGCCCACTCTCTGCCTCAAATTCGCAAAGCCCGAATTCAGTCGTAGCCTGGCGCGAGAGGCTTGGT
TCTACGAACAACTGGATTCGCTTCAGGGCATCTCCGTACCCATTTCCTTCGGTTTCTTCGCATCCACTGCAGCGG
AGCAGCGCCACTTTCCCGATGTCGAGTTCGAGCCCTGGAGGAATCGAAAGGTTTTGTTCAAGGACACAGACAAGA
TCCCACATGACATCGACCGATATGCATCTCCGGACTGGTTACCCGACGATGTGCCCGAATATTACAAGCGAGAGA
GATTCGAGGACCCTCCCAGCAAATGTAATTCACCTTGGTACAAGTGGAGTCGCCTTGACGACAATCCAACTATCT
CTGTACTTGTGCTCGAGCTACTCGGGGAAGCCTGCACCGGGATAAAGACCGCTGCCGACAAACAGGCGATCCAGA
ATGTAATGGATGATTTGGCTGAAGTCGGGGTGATGCATGGCAACCTCACTCCTTGGAACACGCTCGCATTCAAGC
CTCAACCTCACAAAGAAGCACGACGATGCCCTCGACACAATGTAGTCCATCCCTGGAGAGTCATCGACTTTGACC
GTTCGAGGATGGCAGATCCCAAGAACCTGTGCTTTCTTGGCAAGCGTCACATTACCGACACCGACGACATTATGG
ATGATGCAGCAGTGTACTTTGAATTTTGGGACTGAGGCAAGGTCACCAGGTCCAACGGCGGCAATCGACTTCGAT
CCAACCAATCCAACCACGATCAACGCTAGAACCACCGCAGGCCAATACTCACCCAAGCAACCTGGGCGTTGGCTT
TTCCTCCATTTGTAGACCTTGATTCGCCCGCCATCGCCAATCCGATTCGTCCAATGTTCTTCAATCAGTAGACCC
AATTCTGTACTCGTATCGATACCATCTTTTTCC
Length 1233

Gene

Sequence id CopciAB_428994.T0
Sequence >CopciAB_428994.T0
AACCACCACGTCCTTACACCATGCAGCAGATGTTCTCGACACTGCTGATTCACGACTGCGGTACCGCCGACGGGT
ATCTGATCACCATTACTCTCAAAGCCTCGCCCTCGTTCCCTGGTGGCATCTGGTATAAGGAAGACTGGCATGAAC
CCGTTCCTGCCACAAGTGCACCGAAGGATGTCTCCAACCTTGACGGGACCCTCGAGCTCAGGCTAGTCAGGCGCA
TCTCAGAGGGCCGCATTGGCGTAACTTACGTGGCAGAAGTCGTCTCTGCAACGCGCAAATGCACTGACGTCCGCT
CAACTCTACCGCCCACTCTCTGCCTCAAATTCGCAAAGCCCGAATTCAGTCGTAGCCTGGCGCGAGAGGCTTGGT
TCTACGAACAACTGGATTCGCTTCAGGGCATCTCCGTACCCATTTCCTTCGGTTTCTTCGCATCCACTGCAGCGG
AGCAGCGCCACTTTCCCGATGTCGAGTTCGAGCCCTGGAGGAATCGAAAGGTTTTGTTCAAGGACACAGACAAGA
TCCCACATGACATCGACCGATATGCATCTCCGGACTGGTTACCCGACGATGTGCCCGAATATTACAAGCGAGAGA
GATTCGAGGACCCTCCCAGCAAATGTAATTCACCTTGGTACAAGTGGAGTCGCCTTGACGACAATCCAACTATCT
CTGTACTTGTGCTCGAGCTACTCGGGGAAGCCTGCACCGGGATAAAGACCGCTGCCGACAAGTGAGTGCAGCCCT
CATATTTCTCCATGATTACCCCTTACTCAAATGACGTTCCAGACAGGCGATCCAGAATGTAATGGATGATTTGGC
TGAAGTCGGGGTGATGCATGGCAACCTCACTCCTTGGAACACGCTCGCATTCAAGCCTCAACCTCACAAAGAAGC
ACGACGATGCCCTCGACACAATGTAGTCCATCCCTGGAGAGTCATCGACTTTGACCGTTCGAGGATGGCAGATCC
CAAGAACCTGTGCTTTCTTGGCAAGCGTCACATTACCGACACCGACGACATTATGGATGATGCAGCAGTGTACTT
TGAATTTTGGGACTGAGGCAAGGTCACCAGGTGAGCTTTCTTTTTGTTCGAGCGTTCGCCCCTCTCGTCATCCGA
CGAGGCTGTTTTTCAACGTCGTCATTGGTTCCTCGCTCAGGCCCTCTCCCTAGGTCCAACGGCGGCAATCGACTT
CGATCCAACCAATCCAACCACGATCAACGCTAGAACCACCGCAGGCCAATACTCACCCAAGCAACCTGGGCGTTG
GCTTTTCCTCCATTTGTAGACCTTGATTCGCCCGCCATCGCCAATCCGATTCGTCCAATGTTCTTCAATCAGTAG
ACCCAATTCTGTACTCGTATCGATACCATCTTTTTCC
Length 1387