CopciAB_436106
Coprinopsis cinerea A43mutB43mut pab1-1 #326

General data

Systematic name CopciAB_436106 Strain Coprinopsis cinerea Okayama 7
Standard name - Synonyms 436106
Uniprot id Functional description
Location scaffold_6:2639673..2641123 Strand -
Gene length (nt) 1451 Transcript length (nt) 1386
CDS length (nt) 1386 Protein length (aa) 461

Reciprocal best hits in model fungi

Strain name Gene / Protein name

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
0

Expression

Name Summary Attribution Assay type
Carbon metabolism Transcriptional changes along alternative morphogenetic paths of C. cinerea Xie et al. 2020 RNA-Seq
Sample Mean cpm SD cpm Se of mean
sclerotia 0.1568 0.1156 0.0667
oidia 0.4725 0.1854 0.1071
vegetative_mycelium 0.6044 0.2139 0.1235
primordia 0.144 0.1248 0.0721
hyphal_knot 0.1853 0.1119 0.0646
young_fruiting_body 0.5341 0.1484 0.0857
Complex carbon sources 1 (long incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control - glucose 0.3169 0.3281 0.1894
Wheat bran 0.4579 0.3775 0.218
Horse manure 0.2157 0.1138 0.0657
Oak leaves 0.4476 0.078 0.0451
Hay 0.3216 0.3329 0.1922
Corn stalk 0.2371 0.1174 0.0678
Pectine 0.1236 0.046 0.0266
Microcrystalline cellulose 0.2165 0.1583 0.0914
Xylose 0.1167 0.1082 0.0624
Cellobiose 0.2367 0.0967 0.0558
Lignin 0.0947 0.1161 0.067
Apple peels 0.2369 0.2838 0.1639
Coprinopsis challenged with bacteria Transcriptional response to Bacillus subtilis and Escherichia coli. Kombrink et al. 2018 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control 0.6288 0.194 0.112
Bsubtilis 0.2968 0.0855 0.0494
Ecoli 0.0844 0.0766 0.0442
Early development 1 Time series expression profiling of basidiospore and oidium germination Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
BS 0h 0 0 0
BS 4h 0 0 0
BS 8h 0 0 0
BS 12h 0.3601 0.6024 0.3478
Oidia 0 h 0.9827 0.6688 0.3862
Oidia 18 h 0.2227 0.1262 0.0729
Sclerotia 0 0 0
Early development 2 Time series expression profiling of mycelial growth, light induction and fruiting body initiation. Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
DM 12h 0 0 0
DM 36h 0.0226 0.0391 0.0226
DM 60h 0.0132 0.0228 0.0132
DM 84h 0.0573 0.0992 0.0573
DM 108h 0.0162 0.028 0.0162
DM 132h 0.0277 0.048 0.0277
DM 156hAE 0.0337 0.0585 0.0337
ELI1hAE 0.0431 0.0458 0.0264
ELI2hAE 0.0094 0.0162 0.0094
LI2hAE 0 0 0
LI6hAE 0 0 0
LI12hAE 0.0277 0.048 0.0277
LI18hAE 0.0077 0.0134 0.0077
LI 24hAE 0 0 0
DM 156hAM 0.0907 0.0897 0.0518
ELI1hAM 0.0329 0.0571 0.0329
ELI2hAM 0.058 0.1005 0.058
LI2hAM 0.0832 0.1442 0.0832
LI6hAM 0.0958 0.1518 0.0877
LI12hAM 0.0048 0.0083 0.0048
LI18hAM 0.0134 0.0232 0.0134
LI 24hAM 0 0 0
LI 24hHK 0.0066 0.0114 0.0066
L/D 6h 0 0 0
L/D 12h 0 0 0
L/D 18h 0 0 0
L/D 24h 0 0 0
Fruiting body development RNA-Seq analysis of fruiting body development Krizsan et al. 2019 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Vegetative mycelium 0.1391 0.034 0.0196
Hyphal knots 0.129 0.0526 0.0304
Primordium 1 0.1405 0.1141 0.0659
Primordium 2 0.165 0.0563 0.0325
Young Fruiting body cap 0.2029 0.1521 0.0878
Younf fruiting body gill 0.1624 0.0587 0.0339
Young fruiting body stipe 0.1293 0.0731 0.0422
Mature fruiting body cap_gill 0.1651 0.1023 0.0591
Mature fruiting body stipe 0.0935 0.0825 0.0477
Nitrogen sources (12h incubation) Expression profiling on diverse nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Complete medium - control 0.312 0.1076 0.0621
NH4NO3 0.4998 0.1147 0.0662
Proline 0.2829 0.1749 0.101
Tryptophan 0.4769 0.1673 0.0966
Isoleucin 0.8543 0.2116 0.1221
Arginine 0.2714 0.0383 0.0221
Metionine 0.7423 0.1174 0.0678
NaNO3 0.6757 0.1934 0.1117
Plant biomass (12h incubation) Expression profiling on diverse plant biomasses as carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 0.312 0.1076 0.0621
Citrus peel 0.1367 0.1696 0.0979
Poplar leaves 0.4598 0.1639 0.0946
Typha leaves 0.4012 0.1349 0.0779
Overwintered Salix leaves 0.6975 0.0256 0.0148
Reed flowering 0.2721 0.2869 0.1656
Tigernut 0.2274 0.1322 0.0763
Energy cane 0.3284 0.1384 0.0799
Guar gum 0.4421 0.2138 0.1234
Apple peels 1.8746 0.3392 0.1958
Cellobiose 1.2041 0.3291 0.19
Corn stalk 0.478 0.2525 0.1458
Horse manure 0.9091 0.7788 0.4497
Lignin 0.6345 0.4928 0.2845
Microcrystalline cellulose 0.5775 0.3284 0.1896
Oak leaves 0.4743 0.0188 0.0108
Pectin esterified 0.8352 0.3401 0.1964
Poplar sawdust 1.0097 0.6339 0.366
Wheat bran 0.8466 0.4617 0.2666
Chlamydomonas reinhardtii 0.7 0.3462 0.1999
Vertatryl alcohol 0.3713 0.4153 0.2398
Furfural 0.1027 0.0786 0.0454
Autoclaved mycelium 0.1952 0.1702 0.0983
Simple and complex carbon and nitrogen sources Expression profiling on diverse complex carbon and nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 0.48 0.4045 0.2335
Ribose 0.8017 0.1354 0.0782
Mannose 0.531 0.3823 0.2703
Fructose 0.4847 0.2415 0.1394
Arabinose 0.2374 0.057 0.0329
Xylose 0.4304 0.1326 0.0765
Galacturonic acid 0.4201 0.0777 0.0449
Rhamnogalacturonan 0.5616 0.5358 0.3093
Pectin esterified 0.3743 0.2991 0.1727
Polygalacturonic acid 0.4361 0.2482 0.1433
Sodium acetate 0.5804 0.3894 0.2248
No nitrogen 0.5222 0.1666 0.0962
BSA 0.4247 0.2814 0.1625
Glutamine 0.3575 0.4191 0.2419
No phosphate 0.4198 0.2344 0.1353
No carbon 0.4636 0.4085 0.2889
No sulphur 0.3578 0.099 0.0571
Simple and complex carbon sources (12h incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 0.312 0.1076 0.0621
Amylose 0.6185 0.2634 0.1521
Fucose 0.5229 0.1113 0.0643
Galactose 0.5822 0.2374 0.137
Lactose 0.1816 0.1103 0.0637
Maltose 0.5595 0.4102 0.2368
Mannitol 0.4058 0.1086 0.0627
Rhamnose 0.7077 0.246 0.142
Sorbitol 0.6402 0.0974 0.0562
Trehalose 1.142 0.4642 0.268
Glycerol 0.3038 0.2874 0.1659
Glucuronic acid 0.3992 0.2589 0.1495
Arabinan 0.6597 0.0617 0.0356
Galactan 0.5503 0.1524 0.088
Galactomannan 0.581 0.0746 0.0431
Glucan 0.5688 0.1975 0.114
Xylan 0.476 0.097 0.056
Xyloglucan 0.4262 0.2252 0.13
Arabinogalactan 0.5032 0.1531 0.0884
Pectin 0.9082 0.293 0.1691
Rhamnogalacturonan 0.7242 0.477 0.2754
Polygalacturonic acid 0.2778 0.0346 0.02
Mannan 0.8106 0.211 0.1218
Amylopectin 0.5524 0.0707 0.0408
Inulin 0.4815 0.142 0.082
BSA 0.0845 0.0864 0.0499
Starvation induced by water agar transfer Expression profiling on starvation induced by transfer to water agar Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Control 0.0132 0.0228 0.0132
2h WAT 0.0251 0.0436 0.0251
4h WAT 0 0 0
8h WAT 0.0376 0.0651 0.0376
16h WAT 0 0 0
24h WAT 0.0414 0.0718 0.0414
WAT hyphal knot -30h 0.0881 0.1526 0.0881
WAT hyphal knot -22h 0.0397 0.0688 0.0397
WAT hyphal knot -15h 0 0 0
WAT hyphal knot -7.5h 0 0 0
WAT hyphal knot 0.0059 0.0103 0.0059
WAT hyphal knot +7.5h 0.1903 0.1706 0.0985
Straw time series Time series expression profiling on straw as a carbon source Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 2.1479 2.7714 1.6001
Straw 3h 0.3236 0.4604 0.2658
Straw 6h 0.6713 0.312 0.1801
Straw 12h 0.3535 0.1822 0.1052
Straw 24h 0.5112 0.3613 0.2086
Stress conditions 1 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 0.0166 0.0287 0.0166
Frost (-20C, 30min) 0.0023 0.0039 0.0023
Heat shock (47C, 2h) 0.4028 0.2032 0.1173
High CO2 0 0 0
Drought (4% agar, 12h) 0.034 0.0589 0.034
Oxidative (1mM H2O2, 3h) 0.0232 0.0403 0.0232
Acidic (pH4, 3h) 0.0431 0.0746 0.0431
Alkaline (pH9, 3h) 0 0 0
Osmotic (sorbitol 2h) 0 0 0
CongoRed (3h) 0 0 0
Cobalt chloride control 0 0 0
Cobalt chloride 2mM 0 0 0
Stress conditions 2 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 0 0 0
Cold stimulation 0.0279 0.0483 0.0279
Scratched surface 0.0881 0.1253 0.0723
Ca2+, 200mM, 24h 0.0074 0.0128 0.0074
Cu2+, 2mM, 6h 0 0 0
Voriconazole 0.0129 0.0223 0.0129
Trichoderma interaction, early 0 0 0
Trichoderma interaction 60h 1.1228 1.2595 0.7272
Cobalt chloride 2mM repeat 0 0 0
Hypoxia 0.2362 0.1742 0.1006
Hypoxia control 0.0494 0.0856 0.0494
Protoplastation control 0.0043 0.0061 0.0043
Protoplastation 3.5h 0 0 0
Protoplastation 1.5h 0 0 0

General data

Systematic name -
Protein id CopciAB_436106.T0
Description

Annotation summary

0 100 200 300 400 461

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
Pfam PF17667 Fungal protein kinase IPR040976 248 408

SignalP

Prediction Start End Score
No records

Transmembrane domains

Domain n Start End Length
No records

InterPro

Accession Description
IPR040976 Fungal-type protein kinase

GO

Go id Term Ontology
No records

KEGG

KEGG Orthology
No records

EggNOG

COG category Description
No records

CAZy

Class Family Subfamily
No records

Transcription factor

Group
No records

Conservation of CopciAB_436106 across fungi.

Arrow shows the origin of gene family containing CopciAB_436106.

Protein

Sequence id CopciAB_436106.T0
Sequence >CopciAB_436106.T0
MVSRRSLRSAARNAPNMNPITPTRTRRNRVASSPGTSERATMHFTDEISPLQFVQPKGLGLYPMRPMHEAWERDS
GFVNTLLECPVNMADVYEYLAYTELWDSNRCVWPILEDARTRQEYVSAFHTIISDILRHFQLDRKDSGYRTAWIT
SFEHHIDKEAVEIRLNKDSMRVSDVEAQDKRRHDEGFFGKDSYPIPNICVTGTGPCFRSADTAYHFTPSYERSFY
FCEVLENLASPPLFMQTELLEPFARYIFYTQPNRTFFRLLTLSHSGHYRLFHFDRSGVLLTPETPLNVQGNLENA
IDFVSAILSLTPHNNTARTLKAAGFDEYIFWKDENIVSNPIRQGYIIISQKEKDNARREIPFNQRMLPLLSDTPV
SIEPGVAGRGLVRWLAQDEDRNATVVEDWWAEPDPRGNPQATAPEISTSDFRGRENPNETHQRFRNLIKFRRELP
AEEAQYILARY
Length 461

Coding

Sequence id CopciAB_436106.T0
Sequence >CopciAB_436106.T0
ATGGTATCCCGTCGATCCCTCCGAAGTGCAGCTCGTAATGCCCCAAACATGAACCCAATCACACCCACCAGAACG
CGTCGAAATCGCGTAGCGTCGTCGCCAGGCACTAGTGAACGCGCGACTATGCATTTTACAGACGAAATTTCGCCT
CTCCAATTTGTTCAGCCTAAGGGTCTGGGCCTCTACCCGATGAGACCGATGCACGAAGCATGGGAGAGGGATTCT
GGATTCGTAAACACACTCCTTGAGTGTCCTGTTAACATGGCTGACGTCTACGAGTACCTGGCATACACGGAACTT
TGGGACAGTAACAGATGTGTCTGGCCAATCCTGGAAGACGCGAGGACGCGCCAAGAATACGTTTCTGCCTTCCAT
ACCATCATCTCCGATATCTTGAGACACTTCCAATTGGACCGAAAGGATAGCGGGTATCGGACGGCCTGGATTACG
TCGTTTGAGCACCACATCGATAAAGAAGCGGTCGAAATCAGGTTAAATAAAGATTCAATGCGCGTTTCTGATGTC
GAGGCACAAGACAAAAGGCGACATGACGAAGGATTCTTCGGAAAGGACTCCTATCCCATCCCGAACATCTGCGTG
ACAGGAACTGGCCCCTGCTTCCGTAGCGCAGACACCGCATATCACTTCACTCCAAGCTACGAGCGTTCGTTCTAT
TTCTGCGAAGTTCTCGAAAACCTGGCCTCCCCTCCGCTATTCATGCAAACCGAGCTTCTCGAGCCTTTTGCACGA
TACATCTTCTACACTCAGCCTAACCGTACTTTCTTCCGCCTCCTCACCCTAAGCCACAGTGGCCACTACCGACTT
TTCCACTTCGACCGCAGTGGTGTGCTGCTCACACCAGAGACCCCACTCAACGTCCAAGGAAACCTCGAAAACGCG
ATCGATTTCGTCAGTGCAATCCTCAGCCTGACGCCCCATAACAATACCGCAAGAACCTTAAAAGCAGCCGGCTTC
GACGAGTACATCTTCTGGAAAGACGAAAACATCGTCTCTAATCCTATTCGTCAAGGCTACATCATCATCTCGCAG
AAAGAGAAAGATAACGCCAGACGAGAAATCCCATTTAACCAACGCATGCTTCCGCTCCTATCCGACACTCCGGTG
AGCATCGAACCCGGCGTGGCTGGACGAGGTCTCGTTCGCTGGTTGGCCCAGGATGAGGACAGGAACGCCACAGTA
GTGGAGGACTGGTGGGCTGAGCCGGATCCACGAGGGAATCCCCAAGCAACGGCACCCGAAATCTCCACTTCCGAC
TTTCGAGGACGAGAAAACCCAAACGAAACCCATCAACGATTCAGGAATCTCATTAAATTTCGTCGTGAATTACCG
GCAGAAGAGGCCCAATATATCCTGGCGCGGTATTAG
Length 1386

Transcript

Sequence id CopciAB_436106.T0
Sequence >CopciAB_436106.T0
ATGGTATCCCGTCGATCCCTCCGAAGTGCAGCTCGTAATGCCCCAAACATGAACCCAATCACACCCACCAGAACG
CGTCGAAATCGCGTAGCGTCGTCGCCAGGCACTAGTGAACGCGCGACTATGCATTTTACAGACGAAATTTCGCCT
CTCCAATTTGTTCAGCCTAAGGGTCTGGGCCTCTACCCGATGAGACCGATGCACGAAGCATGGGAGAGGGATTCT
GGATTCGTAAACACACTCCTTGAGTGTCCTGTTAACATGGCTGACGTCTACGAGTACCTGGCATACACGGAACTT
TGGGACAGTAACAGATGTGTCTGGCCAATCCTGGAAGACGCGAGGACGCGCCAAGAATACGTTTCTGCCTTCCAT
ACCATCATCTCCGATATCTTGAGACACTTCCAATTGGACCGAAAGGATAGCGGGTATCGGACGGCCTGGATTACG
TCGTTTGAGCACCACATCGATAAAGAAGCGGTCGAAATCAGGTTAAATAAAGATTCAATGCGCGTTTCTGATGTC
GAGGCACAAGACAAAAGGCGACATGACGAAGGATTCTTCGGAAAGGACTCCTATCCCATCCCGAACATCTGCGTG
ACAGGAACTGGCCCCTGCTTCCGTAGCGCAGACACCGCATATCACTTCACTCCAAGCTACGAGCGTTCGTTCTAT
TTCTGCGAAGTTCTCGAAAACCTGGCCTCCCCTCCGCTATTCATGCAAACCGAGCTTCTCGAGCCTTTTGCACGA
TACATCTTCTACACTCAGCCTAACCGTACTTTCTTCCGCCTCCTCACCCTAAGCCACAGTGGCCACTACCGACTT
TTCCACTTCGACCGCAGTGGTGTGCTGCTCACACCAGAGACCCCACTCAACGTCCAAGGAAACCTCGAAAACGCG
ATCGATTTCGTCAGTGCAATCCTCAGCCTGACGCCCCATAACAATACCGCAAGAACCTTAAAAGCAGCCGGCTTC
GACGAGTACATCTTCTGGAAAGACGAAAACATCGTCTCTAATCCTATTCGTCAAGGCTACATCATCATCTCGCAG
AAAGAGAAAGATAACGCCAGACGAGAAATCCCATTTAACCAACGCATGCTTCCGCTCCTATCCGACACTCCGGTG
AGCATCGAACCCGGCGTGGCTGGACGAGGTCTCGTTCGCTGGTTGGCCCAGGATGAGGACAGGAACGCCACAGTA
GTGGAGGACTGGTGGGCTGAGCCGGATCCACGAGGGAATCCCCAAGCAACGGCACCCGAAATCTCCACTTCCGAC
TTTCGAGGACGAGAAAACCCAAACGAAACCCATCAACGATTCAGGAATCTCATTAAATTTCGTCGTGAATTACCG
GCAGAAGAGGCCCAATATATCCTGGCGCGGTATTAG
Length 1386

Gene

Sequence id CopciAB_436106.T0
Sequence >CopciAB_436106.T0
ATGGTATCCCGTCGATCCCTCCGAAGTGCAGCTCGTAATGCCCCAAACATGAACCCAATCACACCCACCAGAACG
CGTCGAAATCGCGTAGCGTCGTCGCCAGGCACTAGTGAACGCGCGACTATGCATTTTACAGACGAAATTTCGCCT
CTCCAATTTGTTCAGCCTAAGGGTCTGGGCCTCTACCCGATGAGACCGATGCACGAAGCATGGGAGAGGGATTCT
GGATTCGTAAACACACTCCTTGAGTGTCCTGTTAACATGGCTGACGTCTACGAGTACCTGGCATACACGGAACTT
TGGGACAGTAACAGATGTGTCTGGCCAATCCTGGAAGACGCGAGGACGCGCCAAGAATACGTTTCTGCCTTCCAT
ACCATCATCTCCGATATCTTGAGACACTTCCAATTGGACCGAAAGGATAGCGGGTATCGGACGGCCTGGATTACG
TCGTTTGAGCACCACATCGATAAAGAAGCGGTCGAAATCAGGTTAAATAAAGATTCAATGCGCGTTTCTGATGTC
GAGGCACAAGACAAAAGGCGACATGACGAAGGATTCTTCGGAAAGGACTCCTATCCCATCCCGAACATCTGCGTG
ACAGGAACTGGCCCCTGCTTCCGTAGCGCAGACACCGCATATCACTTCACTCCAAGCTACGAGCGTTCGTTCTAT
TTCTGCGAAGTTCTCGAAAACCTGGCCTCCCCTCCGCTATTCATGCAAACCGAGCTTCTCGAGCCTTTTGCACGG
TGAGTAGCCTGTCTACCCTTTAATTAGACCCAGAATAAACTGACGAGATATACATTCCACACAGATACATCTTCT
ACACTCAGCCTAACCGTACTTTCTTCCGCCTCCTCACCCTAAGCCACAGTGGCCACTACCGACTTTTCCACTTCG
ACCGCAGTGGTGTGCTGCTCACACCAGAGACCCCACTCAACGTCCAAGGAAACCTCGAAAACGCGATCGATTTCG
TCAGTGCAATCCTCAGCCTGACGCCCCATAACAATACCGCAAGAACCTTAAAAGCAGCCGGCTTCGACGAGTACA
TCTTCTGGAAAGACGAAAACATCGTCTCTAATCCTATTCGTCAAGGCTACATCATCATCTCGCAGAAAGAGAAAG
ATAACGCCAGACGAGAAATCCCATTTAACCAACGCATGCTTCCGCTCCTATCCGACACTCCGGTGAGCATCGAAC
CCGGCGTGGCTGGACGAGGTCTCGTTCGCTGGTTGGCCCAGGATGAGGACAGGAACGCCACAGTAGTGGAGGACT
GGTGGGCTGAGCCGGATCCACGAGGGAATCCCCAAGCAACGGCACCCGAAATCTCCACTTCCGACTTTCGAGGAC
GAGAAAACCCAAACGAAACCCATCAACGATTCAGGAATCTCATTAAATTTCGTCGTGAATTACCGGCAGAAGAGG
CCCAATATATCCTGGCGCGGTATTAG
Length 1451