CopciAB_43635
Coprinopsis cinerea A43mutB43mut pab1-1 #326

General data

Systematic name CopciAB_43635 Strain Coprinopsis cinerea Okayama 7
Standard name - Synonyms 43635
Uniprot id Functional description Protein kinase subdomain-containing protein PKL ccin3
Location scaffold_6:2412106..2413703 Strand +
Gene length (nt) 1598 Transcript length (nt) 1478
CDS length (nt) 978 Protein length (aa) 325

Reciprocal best hits in model fungi

Strain name Gene / Protein name

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
Agrocybe aegerita Agrae_CAA7260888 38.6 9.465E-61 212
Hypsizygus marmoreus strain 51987-8 Hypma_RDB28308 34.8 1.326E-43 162

Expression

Name Summary Attribution Assay type
Carbon metabolism Transcriptional changes along alternative morphogenetic paths of C. cinerea Xie et al. 2020 RNA-Seq
Sample Mean cpm SD cpm Se of mean
sclerotia 21.534 1.9963 1.1525
oidia 14.9009 1.1599 0.6697
vegetative_mycelium 16.0784 0.8375 0.4835
primordia 14.8063 1.8699 1.0796
hyphal_knot 16.7385 1.2495 0.7214
young_fruiting_body 38.7794 5.8939 3.4028
Complex carbon sources 1 (long incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control - glucose 18.3007 0.3514 0.2029
Wheat bran 12.4208 1.5262 0.8811
Horse manure 9.179 2.3447 1.3537
Oak leaves 9.2077 1.2194 0.704
Hay 9.4866 1.2525 0.7231
Corn stalk 11.5268 1.5049 0.8688
Pectine 15.7737 2.1835 1.2607
Microcrystalline cellulose 18.6366 1.851 1.0687
Xylose 14.4294 0.8209 0.4739
Cellobiose 17.9994 0.6697 0.3867
Lignin 11.1953 3.4056 1.9662
Apple peels 16.4839 1.9196 1.1083
Coprinopsis challenged with bacteria Transcriptional response to Bacillus subtilis and Escherichia coli. Kombrink et al. 2018 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control 10.2384 0.857 0.4948
Bsubtilis 11.5645 0.3617 0.2088
Ecoli 12.8025 1.5638 0.9028
Early development 1 Time series expression profiling of basidiospore and oidium germination Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
BS 0h 51.0103 2.4193 1.3968
BS 4h 26.1096 3.4518 1.9929
BS 8h 10.1612 1.1153 0.6439
BS 12h 5.0561 0.4131 0.2385
Oidia 0 h 8.2554 0.3261 0.1883
Oidia 18 h 4.0928 0.836 0.4827
Sclerotia 4.2597 0.3463 0.1999
Early development 2 Time series expression profiling of mycelial growth, light induction and fruiting body initiation. Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
DM 12h 3.7458 0.3446 0.1989
DM 36h 3.0176 0.9009 0.5202
DM 60h 3.5724 0.6024 0.3478
DM 84h 4.4846 0.4678 0.2701
DM 108h 4.1483 0.6691 0.3863
DM 132h 3.9123 0.4641 0.268
DM 156hAE 4.5808 0.832 0.4804
ELI1hAE 6.9422 2.9572 1.7074
ELI2hAE 4.6453 0.4981 0.2876
LI2hAE 5.5595 1.052 0.6074
LI6hAE 4.012 0.8479 0.4895
LI12hAE 4.6518 2.5112 1.4498
LI18hAE 5.6934 2.2825 1.3178
LI 24hAE 5.7059 1.8943 1.0937
DM 156hAM 3.9869 0.656 0.3787
ELI1hAM 4.6407 1.2521 0.7229
ELI2hAM 4.3729 1.2573 0.7259
LI2hAM 3.9021 1.126 0.6501
LI6hAM 4.8035 1.4784 0.8536
LI12hAM 5.6292 1.4181 0.8187
LI18hAM 5.7444 0.6238 0.3602
LI 24hAM 5.5295 0.4002 0.231
LI 24hHK 6.0885 2.4587 1.4195
L/D 6h 7.5552 1.3231 0.7639
L/D 12h 7.8467 1.4105 0.8143
L/D 18h 6.8472 1.8833 1.0873
L/D 24h 6.1797 1.3722 0.7922
Fruiting body development RNA-Seq analysis of fruiting body development Krizsan et al. 2019 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Vegetative mycelium 16.5659 0.5417 0.3128
Hyphal knots 16.8671 0.8947 0.5166
Primordium 1 15.2203 1.5237 0.8797
Primordium 2 14.8905 1.1655 0.6729
Young Fruiting body cap 9.5429 2.3501 1.3568
Younf fruiting body gill 19.788 9.7383 5.6224
Young fruiting body stipe 9.5788 0.5985 0.3455
Mature fruiting body cap_gill 10.4868 1.8881 1.0901
Mature fruiting body stipe 21.9724 0.4679 0.2701
Nitrogen sources (12h incubation) Expression profiling on diverse nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Complete medium - control 15.3222 0.1734 0.1001
NH4NO3 10.9847 1.0755 0.6209
Proline 14.0395 1.3466 0.7774
Tryptophan 12.3667 1.0665 0.6158
Isoleucin 12.9247 0.4652 0.2686
Arginine 14.163 1.692 0.9769
Metionine 12.6883 1.5047 0.8688
NaNO3 9.418 1.5278 0.8821
Plant biomass (12h incubation) Expression profiling on diverse plant biomasses as carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 15.3222 0.1734 0.1001
Citrus peel 9.2403 1.2194 0.704
Poplar leaves 8.0051 2.4985 1.4425
Typha leaves 8.2003 2.1357 1.2331
Overwintered Salix leaves 8.6894 1.6566 0.9564
Reed flowering 8.4282 1.8901 1.0912
Tigernut 7.6839 0.1582 0.0913
Energy cane 10.9562 0.7662 0.4424
Guar gum 12.2788 2.875 1.6599
Apple peels 8.0841 0.6102 0.3523
Cellobiose 12.5728 0.038 0.0219
Corn stalk 10.2276 1.4441 0.8338
Horse manure 8.9767 1.4231 0.8216
Lignin 10.6735 5.4397 3.1406
Microcrystalline cellulose 10.0442 1.283 0.7407
Oak leaves 8.6308 2.4629 1.422
Pectin esterified 7.5202 2.9528 1.7048
Poplar sawdust 11.2359 1.0132 0.585
Wheat bran 10.9276 0.3572 0.2062
Chlamydomonas reinhardtii 10.861 1.5115 0.8727
Vertatryl alcohol 15.0776 0.7622 0.44
Furfural 12.1779 0.6008 0.3468
Autoclaved mycelium 9.7048 0.3376 0.1949
Simple and complex carbon and nitrogen sources Expression profiling on diverse complex carbon and nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 19.3995 1.0767 0.6216
Ribose 15.0096 1.668 0.963
Mannose 16.2156 1.078 0.7623
Fructose 18.1608 2.0988 1.2117
Arabinose 19.1079 2.7164 1.5683
Xylose 16.6939 0.8963 0.5175
Galacturonic acid 18.1244 3.5967 2.0766
Rhamnogalacturonan 16.9898 1.7857 1.031
Pectin esterified 20.7526 0.9003 0.5198
Polygalacturonic acid 18.4524 2.4416 1.4096
Sodium acetate 16.2085 1.9232 1.1104
No nitrogen 19.7798 0.7176 0.4143
BSA 19.3862 2.7583 1.5925
Glutamine 17.1669 1.8622 1.0751
No phosphate 15.0141 0.6402 0.3696
No carbon 15.971 0.4263 0.3015
No sulphur 15.9058 1.8366 1.0604
Simple and complex carbon sources (12h incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 15.3222 0.1734 0.1001
Amylose 11.9659 1.1117 0.6418
Fucose 10.9759 1.1715 0.6764
Galactose 13.3476 1.1528 0.6655
Lactose 10.9182 1.4408 0.8318
Maltose 12.0891 0.8603 0.4967
Mannitol 11.5669 1.3594 0.7848
Rhamnose 11.0974 1.5523 0.8962
Sorbitol 11.3599 0.8439 0.4872
Trehalose 11.3881 0.9762 0.5636
Glycerol 11.3233 2.1992 1.2697
Glucuronic acid 12.4957 1.2821 0.7402
Arabinan 11.8302 2.656 1.5335
Galactan 9.7495 0.2766 0.1597
Galactomannan 11.0662 5.0714 2.928
Glucan 12.5504 2.5381 1.4654
Xylan 9.8275 1.0832 0.6254
Xyloglucan 10.3013 0.7191 0.4152
Arabinogalactan 13.2555 0.6428 0.3711
Pectin 19.227 1.5935 0.92
Rhamnogalacturonan 17.3944 1.5055 0.8692
Polygalacturonic acid 13.6059 1.3546 0.7821
Mannan 12.8114 1.6728 0.9658
Amylopectin 12.2036 2.9038 1.6765
Inulin 11.7039 1.0164 0.5868
BSA 11.7109 2.5401 1.4665
Starvation induced by water agar transfer Expression profiling on starvation induced by transfer to water agar Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Control 3.5724 0.6024 0.3478
2h WAT 3.8601 0.775 0.4474
4h WAT 4.2604 1.5597 0.9005
8h WAT 4.2307 0.2447 0.1413
16h WAT 5.1169 0.8614 0.4973
24h WAT 3.6317 0.931 0.5375
WAT hyphal knot -30h 3.4046 0.3655 0.211
WAT hyphal knot -22h 2.9106 0.7672 0.443
WAT hyphal knot -15h 5.0629 0.6556 0.3785
WAT hyphal knot -7.5h 2.9879 0.4888 0.2822
WAT hyphal knot 3.9785 2.2411 1.2939
WAT hyphal knot +7.5h 6.0078 1.695 0.9786
Straw time series Time series expression profiling on straw as a carbon source Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 8.6362 2.2301 1.2875
Straw 3h 6.9061 2.446 1.4122
Straw 6h 6.1703 0.9185 0.5303
Straw 12h 7.7465 1.0328 0.5963
Straw 24h 6.0581 1.8076 1.0436
Stress conditions 1 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 3.5346 1.7034 0.9835
Frost (-20C, 30min) 7.3033 1.2175 0.7029
Heat shock (47C, 2h) 26.5036 3.3122 1.9123
High CO2 4.8917 1.5932 0.9198
Drought (4% agar, 12h) 7.2278 1.1458 0.6615
Oxidative (1mM H2O2, 3h) 18.6323 0.9664 0.558
Acidic (pH4, 3h) 5.4698 1.0266 0.5927
Alkaline (pH9, 3h) 6.3426 0.9938 0.5738
Osmotic (sorbitol 2h) 4.5912 2.6949 1.5559
CongoRed (3h) 5.1631 0.6609 0.3816
Cobalt chloride control 7.4066 1.1645 0.6723
Cobalt chloride 2mM 8.0997 0.6284 0.3628
Stress conditions 2 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 15.7089 15.516 8.9582
Cold stimulation 8.3 3.5192 2.0318
Scratched surface 5.1252 0.8967 0.5177
Ca2+, 200mM, 24h 10.3132 4.4496 2.569
Cu2+, 2mM, 6h 5.1013 0.8044 0.4644
Voriconazole 6.4574 0.6947 0.4011
Trichoderma interaction, early 4.9815 0.6081 0.3511
Trichoderma interaction 60h 3.0232 1.6593 0.958
Cobalt chloride 2mM repeat 4.9434 2.7219 1.5715
Hypoxia 4.5174 2.4173 1.3956
Hypoxia control 6.4843 2.1322 1.231
Protoplastation control 6.3349 1.1841 0.8373
Protoplastation 3.5h 9.1036 3.0046 2.1246
Protoplastation 1.5h 5.1695 0.0566 0.04

General data

Systematic name -
Protein id CopciAB_43635.T0
Description Protein kinase subdomain-containing protein PKL ccin3

Annotation summary

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
No records

SignalP

Prediction Start End Score
No records

Transmembrane domains

Domain n Start End Length
No records

InterPro

Accession Description
IPR011009 Protein kinase-like domain superfamily

GO

Go id Term Ontology
No records

KEGG

KEGG Orthology
No records

EggNOG

COG category Description
G Protein kinase subdomain-containing protein PKL ccin3

CAZy

Class Family Subfamily
No records

Transcription factor

Group
No records

Conservation of CopciAB_43635 across fungi.

Arrow shows the origin of gene family containing CopciAB_43635.

Protein

Sequence id CopciAB_43635.T0
Sequence >CopciAB_43635.T0
MFSTLLINNCATVGGKSTTISLEVSPSHPSAIWYRKHRGEPAPVNWNSKKVAEGEGELELTLLERISEGRIGVTY
VAKVDSAMRGDVDLRAMLPEKVCLKFAKPEFCRSLAREAWFYEQLESCQGASIPIFYGFFSSSMAEQPWSPNLTF
TPWTTRKHQFDTDSLPREIDQYPSLDLLPDDMLPDWRRKSPIEDPSGYQQNSSWYRWSPSEDNPTISVLVLELLG
ETCTGKKGLGVKAAITEVLDDIATRGVIHPDISAWNILSIRDPLNSCTCSRHNVVHPWRVIDFDRCLMVDIDNKG
PDGIKFLVMPSEALGCDDGFSFLSK
Length 325

Coding

Sequence id CopciAB_43635.T0
Sequence >CopciAB_43635.T0
ATGTTCTCAACCCTACTTATCAATAACTGCGCTACTGTCGGTGGAAAGTCCACAACGATAAGCCTCGAGGTTTCC
CCCTCCCACCCGAGCGCAATCTGGTATCGAAAGCACCGTGGCGAACCAGCCCCCGTCAACTGGAATTCCAAGAAG
GTTGCCGAAGGCGAAGGCGAATTGGAGCTTACCCTTCTCGAGCGCATTTCGGAGGGCCGCATAGGTGTTACCTAC
GTCGCCAAAGTCGACTCCGCTATGCGAGGCGACGTGGATCTACGAGCGATGCTTCCAGAGAAGGTCTGCCTCAAG
TTCGCGAAACCAGAGTTTTGTCGGAGTCTAGCACGGGAAGCATGGTTCTACGAACAGCTCGAGTCATGCCAAGGC
GCCTCTATCCCAATTTTTTACGGCTTCTTTTCATCTTCCATGGCAGAGCAACCATGGTCACCGAACCTCACATTC
ACCCCGTGGACCACAAGGAAACACCAATTCGACACAGACTCGCTCCCCCGCGAAATCGACCAATACCCGTCTCTG
GACCTCCTACCTGACGACATGCTGCCAGACTGGAGGAGAAAATCGCCGATCGAAGACCCATCTGGCTACCAGCAA
AACTCGTCGTGGTACAGATGGAGCCCCAGTGAAGACAATCCGACGATCAGCGTCCTCGTCCTCGAGCTCTTGGGC
GAGACCTGTACTGGCAAAAAGGGACTCGGTGTAAAAGCCGCTATCACAGAGGTGTTGGATGACATTGCCACGCGA
GGAGTCATTCACCCAGACATTTCGGCTTGGAACATCTTATCCATTCGGGACCCACTGAATAGCTGCACCTGCTCA
CGACACAATGTTGTTCATCCTTGGAGAGTCATTGATTTCGACCGCTGTTTAATGGTAGACATCGACAACAAAGGC
CCGGACGGAATCAAATTCCTTGTCATGCCAAGCGAAGCGCTCGGTTGTGACGATGGGTTTTCATTCTTGTCGAAA
TAA
Length 978

Transcript

Sequence id CopciAB_43635.T0
Sequence >CopciAB_43635.T0
AGTAATGTTCTCAACCCTACTTATCAATAACTGCGCTACTGTCGGTGGAAAGTCCACAACGATAAGCCTCGAGGT
TTCCCCCTCCCACCCGAGCGCAATCTGGTATCGAAAGCACCGTGGCGAACCAGCCCCCGTCAACTGGAATTCCAA
GAAGGTTGCCGAAGGCGAAGGCGAATTGGAGCTTACCCTTCTCGAGCGCATTTCGGAGGGCCGCATAGGTGTTAC
CTACGTCGCCAAAGTCGACTCCGCTATGCGAGGCGACGTGGATCTACGAGCGATGCTTCCAGAGAAGGTCTGCCT
CAAGTTCGCGAAACCAGAGTTTTGTCGGAGTCTAGCACGGGAAGCATGGTTCTACGAACAGCTCGAGTCATGCCA
AGGCGCCTCTATCCCAATTTTTTACGGCTTCTTTTCATCTTCCATGGCAGAGCAACCATGGTCACCGAACCTCAC
ATTCACCCCGTGGACCACAAGGAAACACCAATTCGACACAGACTCGCTCCCCCGCGAAATCGACCAATACCCGTC
TCTGGACCTCCTACCTGACGACATGCTGCCAGACTGGAGGAGAAAATCGCCGATCGAAGACCCATCTGGCTACCA
GCAAAACTCGTCGTGGTACAGATGGAGCCCCAGTGAAGACAATCCGACGATCAGCGTCCTCGTCCTCGAGCTCTT
GGGCGAGACCTGTACTGGCAAAAAGGGACTCGGTGTAAAAGCCGCTATCACAGAGGTGTTGGATGACATTGCCAC
GCGAGGAGTCATTCACCCAGACATTTCGGCTTGGAACATCTTATCCATTCGGGACCCACTGAATAGCTGCACCTG
CTCACGACACAATGTTGTTCATCCTTGGAGAGTCATTGATTTCGACCGCTGTTTAATGGTAGACATCGACAACAA
AGGCCCGGACGGAATCAAATTCCTTGTCATGCCAAGCGAAGCGCTCGGTTGTGACGATGGGTTTTCATTCTTGTC
GAAATAATATTCTCGATATGGAACCGGCAACTCTTACATACGTTGTCTTCTGCAGCCTTTACTTATAGCACATCG
ACACCTGGAAGCGCTGGAAGTCTTGGAAGCTCGACGTCGACCCCCGGATACTCACCCAGCCCCAAAGTAAGCGTG
TACAGAGCAAAGGGTGTGGGTGCAGGGAGTGTTGGACGGGCTTTGGACGCCTCATATCTCGGCAAACTGTCGAAG
ACGGAACGCGATGAAGATGAAGAGTGAATACACGCGTCGACTAACAGGGCTGTTCACGTACAAGCCGATAGTAAT
CCAGTAACGAGAGCGACGCCAAGCCATGGGGTAACCTCCTTCACGGCCCGCTCATGGACGAGGAAAGGAGTAGGG
AGGTACTACGACCCCTTCAGATTAGGCCAGGGATGGGTGCGATGCGTAACGAGTGAGATGATTGTATGAGAGGAC
GACAAGTCGCCTTCGGTATGGGTTTTGCGCGCTAATACATCCCCTGCCCTTCC
Length 1478

Gene

Sequence id CopciAB_43635.T0
Sequence >CopciAB_43635.T0
AGTAATGTTCTCAACCCTACTTATCAATAACTGCGCTACTGTCGGTGGAAAGTCCACAACGATAAGCCTCGAGGT
TTCCCCCTCCCACCCGAGCGCAATCTGGTATCGAAAGCACCGTGGCGAACCAGCCCCCGTCAACTGGAATTCCAA
GAAGGTTGCCGAAGGCGAAGGCGAATTGGAGCTTACCCTTCTCGAGCGCATTTCGGAGGGCCGCATAGGTGTTAC
CTACGTCGCCAAAGTCGACTCCGCTATGCGAGGCGACGTGGATCTACGAGCGATGCTTCCAGAGAAGGTCTGCCT
CAAGTTCGCGAAACCAGAGTTTTGTCGGAGTCTAGCACGGGAAGCATGGTTCTACGAACAGCTCGAGTCATGCCA
AGGCGCCTCTATCCCAATTTTTTACGGCTTCTTTTCATCTTCCATGGCAGAGCAACCATGGTCACCGAACCTCAC
ATTCACCCCGTGGACCACAAGGAAACACCAATTCGACACAGACTCGCTCCCCCGCGAAATCGACCAATACCCGTC
TCTGGACCTCCTACCTGACGACATGCTGCCAGACTGGAGGAGAAAATCGCCGATCGAAGACCCATCTGGCTACCA
GCAAAACTCGTCGTGGTACAGATGGAGCCCCAGTGAAGACAATCCGACGATCAGCGTCCTCGTCCTCGAGCTCTT
GGGCGAGACCTGTACTGGCAAAAAGGGACTCGGTGTAAAGTGAGTTTTACTCGTCGATTGACTCCGAACAATTTC
TGAGGAATGAGGAAACGACGGCAGAGCCGCTATCACAGAGGTGTTGGATGACATTGCCACGCGAGGAGTCATTCA
CCCAGACATTTCGGCTTGGAACATCTTATCCATTCGGGACCCACTGAATAGCTGCACCTGCTCACGACACAATGT
TGTTCATCCTTGGAGAGTCATTGATTTCGACCGCTGTTTAATGGTAGACATCGACAACAAAGGCCCGGACGGAAT
CAAATTCCTTGTCATGCCAAGCGAAGCGCTCGGTTGTGACGATGGGTTTTCATTCTTGTCGAAATAATATTCTCG
ATATGGAACCGGCAACTCTTACATACGTTGTCTTCTGCAGCCTTTACTTATAGCACATCGACACCTGGAAGCGCT
GGAAGTCTTGGAAGCTCGACGTCGACCCCCGGATACTCACCCAGCCCCAAAGTAAGCGTGTACAGAGCAAAGGGT
GTGGGTGCAGGGAGTGTTGGACGTGCGTAGATTCTCTGTTGCAACTATTGCCGTGGCGGGGGAGGCTGACTTTAT
GCTATAGGGGCTTTGGACGCCTCATATCTCGGCAAACTGTCGAAGACGGAACGCGATGAAGATGAAGAGTGAATA
CACGCGTCGACTAACAGGGCTGTTCACGTACAAGCCGATAGTAATCCAGTAACGAGAGCGACGCCAAGCCATGGG
GTAACCTCCTTCACGGCCCGCTCATGGACGAGGAAAGGAGTAGGGAGGTACTACGACCCCTTCAGATTAGGCCAG
GGATGGGTGCGATGCGTAACGAGTGAGATGATTGTATGAGAGGACGACAAGTCGCCTTCGGTATGGGTTTTGCGC
GCTAATACATCCCCTGCCCTTCC
Length 1598