CopciAB_439224
Coprinopsis cinerea A43mutB43mut pab1-1 #326

General data

Systematic name CopciAB_439224 Strain
Standard name - Synonyms 439224
Uniprot id Functional description Glycoside hydrolase family 61 protein
Location scaffold_3:3305033..3306664 Strand +
Gene length (nt) 1632 Transcript length (nt) 1431
CDS length (nt) 522 Protein length (aa) 173

Reciprocal best hits in model fungi

Strain name Gene / Protein name

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
0

Expression

Name Summary Attribution Assay type
Carbon metabolism Transcriptional changes along alternative morphogenetic paths of C. cinerea Xie et al. 2020 RNA-Seq
Sample Mean cpm SD cpm Se of mean
sclerotia 0.5882 0.3547 0.2048
oidia 1.4667 0.3081 0.1779
vegetative_mycelium 0.6254 0.2464 0.1423
primordia 0.8367 0.3023 0.1745
hyphal_knot 0.913 0.149 0.086
young_fruiting_body 0.7017 0.403 0.2327
Complex carbon sources 1 (long incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control - glucose 0.8507 0.3626 0.2093
Wheat bran 2.1473 0.879 0.5075
Horse manure 3.4809 1.404 0.8106
Oak leaves 2.6522 1.4456 0.8346
Hay 2.2167 1.0321 0.5959
Corn stalk 3.6415 1.3832 0.7986
Pectine 3.6845 1.0063 0.581
Microcrystalline cellulose 2.053 0.1761 0.1017
Xylose 1.1702 0.2687 0.1551
Cellobiose 0.4346 0.1108 0.064
Lignin 1.9013 0.9413 0.5435
Apple peels 2.078 1.186 0.6848
Coprinopsis challenged with bacteria Transcriptional response to Bacillus subtilis and Escherichia coli. Kombrink et al. 2018 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control 0.5187 0.0783 0.0452
Bsubtilis 0.4079 0.1985 0.1146
Ecoli 1.0696 0.3126 0.1805
Early development 1 Time series expression profiling of basidiospore and oidium germination Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
BS 0h 11.231 2.0675 1.1937
BS 4h 3.2254 0.9263 0.5348
BS 8h 1.4251 0.3382 0.1952
BS 12h 0.6317 0.5549 0.3204
Oidia 0 h 40.1044 12.7246 7.3466
Oidia 18 h 2.2565 0.9909 0.5721
Sclerotia 0.0694 0.1202 0.0694
Early development 2 Time series expression profiling of mycelial growth, light induction and fruiting body initiation. Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
DM 12h 0.8195 0.795 0.459
DM 36h 0.8409 0.216 0.1247
DM 60h 0.3569 0.0335 0.0193
DM 84h 0.6349 0.203 0.1172
DM 108h 0.7957 0.1557 0.0899
DM 132h 0.68 0.1938 0.1119
DM 156hAE 0.7171 0.4973 0.2871
ELI1hAE 0.495 0.2921 0.1686
ELI2hAE 0.0886 0.0903 0.0521
LI2hAE 0.6989 0.2102 0.1214
LI6hAE 0.5904 0.5381 0.3107
LI12hAE 2.202 1.4632 0.8448
LI18hAE 2.0808 1.6574 0.9569
LI 24hAE 2.5507 0.2223 0.1283
DM 156hAM 0.2968 0.1433 0.0828
ELI1hAM 0.8733 0.4733 0.2733
ELI2hAM 0.298 0.3756 0.2169
LI2hAM 0.6475 0.6262 0.3616
LI6hAM 1.0827 0.2649 0.1529
LI12hAM 0.3621 0.3314 0.1913
LI18hAM 1.4711 0.3104 0.1792
LI 24hAM 0.8007 0.4365 0.252
LI 24hHK 0.8082 0.2 0.1155
L/D 6h 0.7759 0.495 0.2858
L/D 12h 0.5651 0.3149 0.1818
L/D 18h 0.7018 0.9675 0.5586
L/D 24h 0.6267 0.1419 0.082
Fruiting body development RNA-Seq analysis of fruiting body development Krizsan et al. 2019 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Vegetative mycelium 2.3995 0.7942 0.4586
Hyphal knots 1.1083 1.0055 0.5805
Primordium 1 0.2465 0.0626 0.0361
Primordium 2 0.2696 0.1086 0.0627
Young Fruiting body cap 0.1753 0.152 0.0877
Younf fruiting body gill 0.4308 0.2153 0.1243
Young fruiting body stipe 0.1219 0.1053 0.0608
Mature fruiting body cap_gill 0.5807 0.1938 0.1119
Mature fruiting body stipe 0.5496 0.2603 0.1503
Nitrogen sources (12h incubation) Expression profiling on diverse nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Complete medium - control 0.5513 0.1731 0.0999
NH4NO3 0.1859 0.0795 0.0459
Proline 0.4052 0.0675 0.039
Tryptophan 0.4587 0.0511 0.0295
Isoleucin 0.4317 0.0762 0.044
Arginine 0.5789 0.0992 0.0573
Metionine 0.4505 0.0667 0.0385
NaNO3 0.8337 0.4438 0.2562
Plant biomass (12h incubation) Expression profiling on diverse plant biomasses as carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 0.5513 0.1731 0.0999
Citrus peel 0.5643 0.1819 0.105
Poplar leaves 0.2585 0.1417 0.0818
Typha leaves 0.2069 0.0481 0.0278
Overwintered Salix leaves 0.4939 0.3012 0.1739
Reed flowering 0.4721 0.3859 0.2228
Tigernut 0.491 0.2476 0.143
Energy cane 0.1848 0.1172 0.0677
Guar gum 0.7037 0.2016 0.1164
Apple peels 0.4973 0.3192 0.1843
Cellobiose 0.3355 0.1667 0.0963
Corn stalk 0.4287 0.0605 0.035
Horse manure 0.5211 0.1191 0.0688
Lignin 0.7842 0.6299 0.3637
Microcrystalline cellulose 0.4203 0.3187 0.184
Oak leaves 0.2838 0.1377 0.0795
Pectin esterified 0.9196 0.3256 0.188
Poplar sawdust 0.7021 0.2023 0.1168
Wheat bran 0.1869 0.0758 0.0438
Chlamydomonas reinhardtii 0.2828 0.0766 0.0443
Vertatryl alcohol 1.6459 0.3696 0.2134
Furfural 1.1056 0.4087 0.236
Autoclaved mycelium 0.3233 0.3588 0.2071
Simple and complex carbon and nitrogen sources Expression profiling on diverse complex carbon and nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 0.6046 0.2344 0.1354
Ribose 1.1376 0.3983 0.23
Mannose 0.7302 0.547 0.3868
Fructose 0.8404 0.2322 0.1341
Arabinose 1.0195 0.2993 0.1728
Xylose 0.732 0.3746 0.2163
Galacturonic acid 0.9213 0.5811 0.3355
Rhamnogalacturonan 1.0411 0.4676 0.27
Pectin esterified 0.6464 0.2297 0.1326
Polygalacturonic acid 0.6425 0.1562 0.0902
Sodium acetate 1.147 0.2208 0.1275
No nitrogen 0.7092 0.1755 0.1013
BSA 0.7619 0.3695 0.2134
Glutamine 0.6426 0.378 0.2182
No phosphate 0.9572 0.3927 0.2267
No carbon 1.4111 0.2657 0.1879
No sulphur 0.8247 0.1545 0.0892
Simple and complex carbon sources (12h incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 0.5513 0.1731 0.0999
Amylose 0.4444 0.2238 0.1292
Fucose 0.6528 0.2386 0.1378
Galactose 0.5248 0.2879 0.1662
Lactose 0.8824 0.5545 0.3202
Maltose 0.9185 0.4785 0.2762
Mannitol 0.7666 0.6411 0.3701
Rhamnose 0.2954 0.0664 0.0383
Sorbitol 0.4047 0.1533 0.0885
Trehalose 0.2795 0.2452 0.1416
Glycerol 0.6033 0.1264 0.073
Glucuronic acid 0.35 0.0326 0.0188
Arabinan 0.7602 0.3567 0.2059
Galactan 0.2605 0.1677 0.0968
Galactomannan 0.409 0.3761 0.2171
Glucan 0.4937 0.2391 0.138
Xylan 0.5114 0.0777 0.0449
Xyloglucan 0.5746 0.0903 0.0521
Arabinogalactan 0.4312 0.1496 0.0863
Pectin 0.4822 0.1284 0.0742
Rhamnogalacturonan 0.2003 0.1348 0.0778
Polygalacturonic acid 0.1919 0.1233 0.0712
Mannan 0.3823 0.1404 0.081
Amylopectin 0.4469 0.2438 0.1408
Inulin 0.3072 0.1342 0.0775
BSA 0.2215 0.1247 0.072
Starvation induced by water agar transfer Expression profiling on starvation induced by transfer to water agar Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Control 0.3569 0.0335 0.0193
2h WAT 0.9806 0.9808 0.5663
4h WAT 0.761 0.3927 0.2267
8h WAT 0.5217 0.1077 0.0622
16h WAT 0.5138 0.4808 0.2776
24h WAT 0.6785 0.5019 0.2898
WAT hyphal knot -30h 0.3515 0.3173 0.1832
WAT hyphal knot -22h 0.5669 0.2873 0.1659
WAT hyphal knot -15h 1.0039 0.1408 0.0813
WAT hyphal knot -7.5h 0.3794 0.2095 0.121
WAT hyphal knot 0.7544 0.6762 0.3904
WAT hyphal knot +7.5h 1.3499 0.7344 0.424
Straw time series Time series expression profiling on straw as a carbon source Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 0.542 0.4694 0.271
Straw 3h 0.7043 0.1206 0.0696
Straw 6h 0.446 0.2476 0.1429
Straw 12h 0.2073 0.1905 0.11
Straw 24h 0.556 0.4859 0.2806
Stress conditions 1 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 0.4906 0.3665 0.2116
Frost (-20C, 30min) 0.7036 0.1008 0.0582
Heat shock (47C, 2h) 0.6511 0.5776 0.3335
High CO2 0.6806 0.3686 0.2128
Drought (4% agar, 12h) 0.6645 0.3471 0.2004
Oxidative (1mM H2O2, 3h) 0.8212 0.2633 0.152
Acidic (pH4, 3h) 0.597 0.5386 0.311
Alkaline (pH9, 3h) 0.373 0.1777 0.1026
Osmotic (sorbitol 2h) 0 0 0
CongoRed (3h) 0.2014 0.1788 0.1032
Cobalt chloride control 1.2221 0.0911 0.0526
Cobalt chloride 2mM 0.599 0.4031 0.2327
Stress conditions 2 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 0.6137 0.5266 0.304
Cold stimulation 0.423 0.5313 0.3068
Scratched surface 0.8162 0.39 0.2252
Ca2+, 200mM, 24h 0.4588 0.5347 0.3087
Cu2+, 2mM, 6h 0.5496 0.3067 0.1771
Voriconazole 0.579 0.4411 0.2547
Trichoderma interaction, early 0.8076 0.1612 0.0931
Trichoderma interaction 60h 0.9447 1.6363 0.9447
Cobalt chloride 2mM repeat 0.2867 0.2955 0.1706
Hypoxia 0.812 0.2861 0.1652
Hypoxia control 0.3016 0.3863 0.223
Protoplastation control 1.2414 0.6799 0.4807
Protoplastation 3.5h 1.5054 0.7581 0.5361
Protoplastation 1.5h 1.6769 2.1623 1.529

General data

Systematic name -
Protein id CopciAB_439224.T0
Description Glycoside hydrolase family 61 protein

Annotation summary

0 40 80 120 160 173

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
Pfam PF03443 Auxiliary Activity family 9 (formerly GH61) IPR005103 19 118

SignalP

Prediction Start End Score
SP(Sec/SPI) 1 18 0.9855

Transmembrane domains

Domain n Start End Length
No records

InterPro

Accession Description
IPR005103 Auxiliary Activity family 9

GO

Go id Term Ontology
No records

KEGG

KEGG Orthology
No records

EggNOG

COG category Description
O Glycoside hydrolase family 61 protein

CAZy

Class Family Subfamily
AA AA9

Transcription factor

Group
No records

Conservation of CopciAB_439224 across fungi.

Arrow shows the origin of gene family containing CopciAB_439224.

Protein

Sequence id CopciAB_439224.T0
Sequence >CopciAB_439224.T0
MHLWWILQLAALAHLSSAHYIFDTLVAGSVVSRAAVRRPRDNGPVLNITSPDIRCNVNLNRATETVSVPAGSRVG
FVLDNAKTIYHLGPAAMYMGKAPGKVEDWDGSGESWFKVRHFIVALPPYWTIKYLVRSPTGAQPSLQNSRSLPWT
NANSIQPYRKQFRQESICCGWSR
Length 173

Coding

Sequence id CopciAB_439224.T0
Sequence >CopciAB_439224.T0
ATGCACCTCTGGTGGATTTTGCAGCTGGCGGCACTCGCCCATCTGAGCTCTGCACATTATATCTTTGATACTCTC
GTCGCTGGGTCGGTGGTGTCAAGAGCAGCCGTTAGACGACCAAGGGATAATGGTCCTGTGCTCAACATCACTTCA
CCGGACATCCGGTGTAATGTCAACCTCAATCGTGCAACGGAGACCGTATCTGTTCCTGCAGGCAGTAGAGTAGGT
TTCGTCCTCGACAACGCGAAAACGATATACCATTTGGGTCCGGCAGCAATGTACATGGGGAAGGCGCCGGGAAAG
GTTGAAGATTGGGATGGAAGTGGTGAATCGTGGTTCAAAGTGCGTCATTTTATTGTTGCTCTCCCTCCTTATTGG
ACCATAAAGTATCTTGTTAGATCGCCCACTGGGGCGCAGCCTTCTCTCCAAAATTCACGTTCATTACCTTGGACG
AACGCGAATTCTATACAACCATACCGAAAACAGTTCCGTCAGGAGAGTATTTGCTGCGGATGGAGCAGATAG
Length 522

Transcript

Sequence id CopciAB_439224.T0
Sequence >CopciAB_439224.T0
CCTTCAAGTCACCTTAACTTGAACTTGAAGCTTGTTGGAACCACACGAGCTCCTGGCGGTTGCTTTCCAGGAACG
CACCTCGGAAAATCTCGTCCAATTAAATCAAAGGCAACCCTTGTGTTCCCCGCGATCTGTGGCACTCCAATGTGG
TCAACAAGCTTTCCTCAACAATCGGCTCTGTGATGCGCCTACTTAGTCGCGACCTCTGCTGCTACTCCTGCGTTT
GTTTATTCAAAACATTTGGGGAAGGATATCAAAGGAGCCTGGAAAGGGGATCTGGCGAAGTTCTGCTGCTCCGAA
AGCTCACCGCGGGAGGGACACAGTGACACTTTGTGCATGTGCAGAAGACTGAGACATAGGGTGTCTTGTTCCCTT
GTCGTTGCCTCCGACATGTCAACACGCTGGCTGGCATTCCCAACATGCTCTGTTCATTGTGAAACCAGTCATTAA
ACAGCTATGTTGGTTCCCGATTACCATAACCGATCGCGTTCTTTCACCGCGTCGCGTCGATTTCTCACCAGTACC
TTGACAATCGATATCCCAGCCCAACCATGCACCTCTGGTGGATTTTGCAGCTGGCGGCACTCGCCCATCTGAGCT
CTGCACATTATATCTTTGATACTCTCGTCGCTGGGTCGGTGGTGTCAAGAGCAGCCGTTAGACGACCAAGGGATA
ATGGTCCTGTGCTCAACATCACTTCACCGGACATCCGGTGTAATGTCAACCTCAATCGTGCAACGGAGACCGTAT
CTGTTCCTGCAGGCAGTAGAGTAGGTTTCGTCCTCGACAACGCGAAAACGATATACCATTTGGGTCCGGCAGCAA
TGTACATGGGGAAGGCGCCGGGAAAGGTTGAAGATTGGGATGGAAGTGGTGAATCGTGGTTCAAAGTGCGTCATT
TTATTGTTGCTCTCCCTCCTTATTGGACCATAAAGTATCTTGTTAGATCGCCCACTGGGGCGCAGCCTTCTCTCC
AAAATTCACGTTCATTACCTTGGACGAACGCGAATTCTATACAACCATACCGAAAACAGTTCCGTCAGGAGAGTA
TTTGCTGCGGATGGAGCAGATAGGGCTGCACCAGCCAGGGATGCCCGAATTCTTCATGTCATGCGCACAAATTCG
AGTAACAGACGGTGGATCTGGCAATCCGCCAATGTATTCAATTCCCGGGTACCTTTCTCCGGACGATCCCGGTTT
AACTGTCGATATCTACTGGCCTGTCCCAACTTCCTATGAGGTACCTGGACCGAAACCATATAGAGGACAACCCGA
CGTCTGTAACATGACAGCAGGCCTCAAGATACCGCCTCGCTACTGATCCGCCTAATACTATCAAACAAGATATCG
TTGTCCAACAGCCACCCTATATCTCACAGTAAGCCCGTAACCACCAATTACAGACAATATAAATTCTTGTCCTTC
GTTTCA
Length 1431

Gene

Sequence id CopciAB_439224.T0
Sequence >CopciAB_439224.T0
CCTTCAAGTCACCTTAACTTGAACTTGAAGCTTGTTGGAACCACACGAGCTCCTGGCGGTTGCTTTCCAGGAACG
CACCTCGGAAAATCTCGTCCAATTAAATCAAAGGCAACCCTTGTGTTCCCCGCGATCTGTGGCACTCCAATGTGG
TCAACAAGCTTTCCTCAACAATCGGCTCTGTGATGCGCCTACTTAGTCGCGACCTCTGCTGCTACTCCTGCGTTT
GTTTATTCAAAACATTTGGGGAAGGATATCAAAGGAGCCTGGAAAGGGGATCTGGCGAAGTTCTGCTGCTCCGAA
AGCTCACCGCGGGAGGGACACAGTGACACTTTGTGCATGTGCAGAAGACTGAGACATAGGGTGTCTTGTTCCCTT
GTCGTTGCCTCCGACATGTCAACACGCTGGCTGGCATTCCCAACATGCTCTGTTCATTGTGAAACCAGTCATTAA
ACAGCTATGTTGGTTCCCGATTACCATAACCGATCGCGTTCTTTCACCGCGTCGCGTCGATTTCTCACCAGTACC
TTGACAATCGATATCCCAGCCCAACCATGCACCTCTGGTGGATTTTGCAGCTGGCGGCACTCGCCCATCTGAGCT
CTGCACATTGTAAGTTCTCTCCATCCAGACGTCCTTTACACTGGAACTCATATTCTTTCAGATATCTTTGATACT
CTCGTCGCTGGGTCGGTGGTGTCAAGAGCAGCCGTTAGACGACCAAGGGATAATGGTCCTGTGCTCAACATCACT
TCACCGGACATCCGGTGTAATGTCAACCTCAATCGTGCAACGGAGACCGTATCTGTTCCTGCAGGCAGTAGAGTA
GGTTTCGTCCTCGACAACGCGAAAACGATATACCATTTGGGTCCGGCAGCAATGTACATGGGGAAGGCGCCGGGA
AAGGTTGAAGATTGGGATGGAAGTGGTGAATCGTGGTTCAAAGTGCGTCATTTTATTGTTGCTCTCCCTCCTTAT
TGGACCATAAAGTATCTTGTTAGATCGCCCACTGGGGCGCAGCCTTCTCTCCAAAATTCACGTTCATTACCTTGG
ACGAACGCGAATTCTATACAACCATACCGAAAACAGTTCCGTCAGGAGAGGTATGTGGCCGTTGTCTGTCTCCGC
TAATGTCTCTAATGAAGGGCCACAGTATTTGCTGCGGATGGAGCAGATAGGGCTGCACCAGCCAGGGATGCCCGA
ATTCTTCATGTCATGCGCACAAATTCGAGTAACAGACGGTGGATCTGGCAATCCGCCAATGTATTCAATTCCCGG
GTACCTTTCTCCGGACGGTAAGATACACTCTCCCAACAATTCCTCAACGTTCTAATCTTTCCCAGATCCCGGTTT
AACTGTCGATATCTACTGGCCTGTCCCAACTTCCTATGAGGTGAGTCGATGGACAATATATAAATGATGAACACC
ATTCATGGAAGAACAGGTACCTGGACCGAAACCATATAGAGGACAACCCGACGTCTGTAACATGACAGCAGGCCT
CAAGATACCGCCTCGCTACTGATCCGCCTAATACTATCAAACAAGATATCGTTGTCCAACAGCCACCCTATATCT
CACAGTAAGCCCGTAACCACCAATTACAGACAATATAAATTCTTGTCCTTCGTTTCA
Length 1632