CopciAB_441992
Coprinopsis cinerea A43mutB43mut pab1-1 #326

General data

Systematic name CopciAB_441992 Strain Coprinopsis cinerea Okayama 7
Standard name - Synonyms 441992
Uniprot id Functional description
Location scaffold_4:582436..583693 Strand +
Gene length (nt) 1258 Transcript length (nt) 1258
CDS length (nt) 1110 Protein length (aa) 369

Reciprocal best hits in model fungi

Strain name Gene / Protein name

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
Lentinula edodes B17 Lened_B_1_1_7693 28 0.0003 42

Expression

Name Summary Attribution Assay type
Carbon metabolism Transcriptional changes along alternative morphogenetic paths of C. cinerea Xie et al. 2020 RNA-Seq
Sample Mean cpm SD cpm Se of mean
sclerotia 6.372 0.9228 0.5328
oidia 12.0051 1.2427 0.7175
vegetative_mycelium 13.8277 2.1598 1.247
primordia 12.9188 1.876 1.0831
hyphal_knot 6.5974 1.2006 0.6932
young_fruiting_body 4.1518 0.718 0.4146
Complex carbon sources 1 (long incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control - glucose 6.4349 1.0101 0.5832
Wheat bran 8.4433 1.0675 0.6163
Horse manure 8.5663 2.1334 1.2317
Oak leaves 7.1537 1.2036 0.6949
Hay 7.9818 1.8331 1.0584
Corn stalk 7.1438 0.3012 0.1739
Pectine 9.6834 0.5283 0.305
Microcrystalline cellulose 8.2667 1.8684 1.0787
Xylose 6.204 0.5202 0.3004
Cellobiose 6.1175 0.238 0.1374
Lignin 9.3136 2.5784 1.4887
Apple peels 5.0943 0.7043 0.4066
Coprinopsis challenged with bacteria Transcriptional response to Bacillus subtilis and Escherichia coli. Kombrink et al. 2018 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control 8.0992 0.5224 0.3016
Bsubtilis 7.2088 0.6762 0.3904
Ecoli 10.3284 1.3917 0.8035
Early development 1 Time series expression profiling of basidiospore and oidium germination Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
BS 0h 11.8636 3.1763 1.8338
BS 4h 6.5214 0.4284 0.2474
BS 8h 5.7015 1.3063 0.7542
BS 12h 4.4413 0.6256 0.3612
Oidia 0 h 39.0372 7.1547 4.1308
Oidia 18 h 8.658 1.9886 1.1481
Sclerotia 1.7582 0.4575 0.2641
Early development 2 Time series expression profiling of mycelial growth, light induction and fruiting body initiation. Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
DM 12h 7.7438 0.8046 0.4646
DM 36h 8.6865 1.3329 0.7696
DM 60h 6.7913 0.6327 0.3653
DM 84h 7.3698 0.3353 0.1936
DM 108h 8.3847 0.9177 0.5298
DM 132h 7.6921 1.0685 0.6169
DM 156hAE 6.4224 1.1839 0.6835
ELI1hAE 10.8173 1.9967 1.1528
ELI2hAE 9.9604 1.92 1.1085
LI2hAE 8.6967 1.9539 1.1281
LI6hAE 6.6875 0.8555 0.4939
LI12hAE 8.6136 0.7358 0.4248
LI18hAE 8.4793 1.2858 0.7424
LI 24hAE 8.199 1.6084 0.9286
DM 156hAM 7.1554 2.3012 1.3286
ELI1hAM 11.8981 2.2582 1.3037
ELI2hAM 11.6539 2.8107 1.6228
LI2hAM 11.0231 1.6913 0.9765
LI6hAM 7.7751 1.3118 0.7574
LI12hAM 6.5547 1.947 1.1241
LI18hAM 4.9761 0.5598 0.3232
LI 24hAM 2.6973 0.603 0.3482
LI 24hHK 7.2057 2.4804 1.4321
L/D 6h 3.4759 0.3935 0.2272
L/D 12h 4.9561 1.6335 0.9431
L/D 18h 3.4233 0.9278 0.5357
L/D 24h 3.2491 0.0571 0.0329
Fruiting body development RNA-Seq analysis of fruiting body development Krizsan et al. 2019 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Vegetative mycelium 5.2378 0.8072 0.466
Hyphal knots 3.7946 1.0106 0.5835
Primordium 1 3.6839 0.482 0.2783
Primordium 2 3.1929 0.4141 0.2391
Young Fruiting body cap 1.4239 0.6865 0.3964
Younf fruiting body gill 9.9112 5.3208 3.072
Young fruiting body stipe 1.3548 0.8747 0.505
Mature fruiting body cap_gill 4.2833 1.4618 0.844
Mature fruiting body stipe 2.2474 0.461 0.2661
Nitrogen sources (12h incubation) Expression profiling on diverse nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Complete medium - control 9.308 0.9035 0.5216
NH4NO3 6.9141 2.1797 1.2584
Proline 8.0355 2.5324 1.4621
Tryptophan 8.333 1.434 0.8279
Isoleucin 6.8213 1.192 0.6882
Arginine 9.4124 0.6317 0.3647
Metionine 9.8293 1.0354 0.5978
NaNO3 8.7522 0.1259 0.0727
Plant biomass (12h incubation) Expression profiling on diverse plant biomasses as carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 9.308 0.9035 0.5216
Citrus peel 12.077 1.5528 0.8965
Poplar leaves 6.549 0.4282 0.2472
Typha leaves 9.0978 1.7804 1.0279
Overwintered Salix leaves 9.1433 0.6354 0.3668
Reed flowering 8.0035 1.0599 0.612
Tigernut 7.552 2.6352 1.5214
Energy cane 7.1431 0.6378 0.3683
Guar gum 9.5471 1.5631 0.9025
Apple peels 12.4797 2.1772 1.257
Cellobiose 10.5154 1.4279 0.8244
Corn stalk 8.4637 1.3683 0.79
Horse manure 11.9986 1.5506 0.8952
Lignin 18.3493 4.5992 2.6554
Microcrystalline cellulose 10.9254 1.6476 0.9512
Oak leaves 9.8668 0.7067 0.408
Pectin esterified 10.4722 3.1729 1.8319
Poplar sawdust 10.1733 0.2071 0.1196
Wheat bran 8.3201 0.6539 0.3775
Chlamydomonas reinhardtii 6.5388 1.1958 0.6904
Vertatryl alcohol 23.4041 2.7775 1.6036
Furfural 17.7578 2.195 1.2673
Autoclaved mycelium 7.8719 0.8215 0.4743
Simple and complex carbon and nitrogen sources Expression profiling on diverse complex carbon and nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 8.9497 0.4378 0.2528
Ribose 9.7799 1.4042 0.8107
Mannose 10.8187 0.2409 0.1703
Fructose 9.2828 0.9758 0.5634
Arabinose 9.978 1.808 1.0438
Xylose 10.7502 1.6491 0.9521
Galacturonic acid 9.5878 2.406 1.3891
Rhamnogalacturonan 8.8688 0.7685 0.4437
Pectin esterified 9.9719 0.3048 0.176
Polygalacturonic acid 12.6359 1.0616 0.6129
Sodium acetate 11.9319 2.3098 1.3336
No nitrogen 10.3132 1.6775 0.9685
BSA 9.8284 1.4007 0.8087
Glutamine 7.992 1.5924 0.9194
No phosphate 8.0087 0.9061 0.5231
No carbon 6.9528 0.2768 0.1957
No sulphur 7.7715 1.5562 0.8985
Simple and complex carbon sources (12h incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 9.308 0.9035 0.5216
Amylose 5.1561 0.463 0.2673
Fucose 7.5426 0.6352 0.3667
Galactose 7.4753 0.3845 0.222
Lactose 5.4589 0.909 0.5248
Maltose 5.7703 1.0931 0.6311
Mannitol 6.1818 1.3827 0.7983
Rhamnose 6.6276 2.1814 1.2594
Sorbitol 7.1673 0.6881 0.3973
Trehalose 8.1561 4.7879 2.7643
Glycerol 6.9358 1.2517 0.7227
Glucuronic acid 5.8198 0.6273 0.3622
Arabinan 8.6111 2.3442 1.3534
Galactan 8.5061 0.5335 0.308
Galactomannan 8.9103 1.6938 0.9779
Glucan 10.3124 2.4668 1.4242
Xylan 7.6948 1.5888 0.9173
Xyloglucan 5.8105 1.9448 1.1228
Arabinogalactan 7.4737 0.7967 0.46
Pectin 12.5584 4.1312 2.3851
Rhamnogalacturonan 10.5734 1.7832 1.0295
Polygalacturonic acid 7.9372 0.5169 0.2985
Mannan 7.2054 0.9696 0.5598
Amylopectin 10.1855 1.6965 0.9795
Inulin 5.4987 0.3184 0.1839
BSA 9.8867 0.7309 0.422
Starvation induced by water agar transfer Expression profiling on starvation induced by transfer to water agar Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Control 6.7913 0.6327 0.3653
2h WAT 10.7621 0.2633 0.152
4h WAT 7.569 2.1115 1.2191
8h WAT 7.2172 1.3651 0.7882
16h WAT 5.042 1.9915 1.1498
24h WAT 5.9381 0.5393 0.3113
WAT hyphal knot -30h 10.6373 2.2648 1.3076
WAT hyphal knot -22h 9.6491 3.5765 2.0649
WAT hyphal knot -15h 10.8388 1.7602 1.0162
WAT hyphal knot -7.5h 7.7278 1.0946 0.632
WAT hyphal knot 9.5045 1.7586 1.0153
WAT hyphal knot +7.5h 6.5458 1.897 1.0952
Straw time series Time series expression profiling on straw as a carbon source Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 13.1757 1.5431 0.8909
Straw 3h 10.2184 1.2321 0.7113
Straw 6h 10.7062 2.7225 1.5719
Straw 12h 9.1437 1.5128 0.8734
Straw 24h 10.3728 1.1288 0.6517
Stress conditions 1 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 5.9224 1.7998 1.0391
Frost (-20C, 30min) 5.2676 0.5122 0.2957
Heat shock (47C, 2h) 17.7505 1.9622 1.1329
High CO2 6.9337 0.1281 0.0739
Drought (4% agar, 12h) 6.8673 1.2874 0.7433
Oxidative (1mM H2O2, 3h) 8.5612 1.3838 0.7989
Acidic (pH4, 3h) 6.3373 0.4483 0.2588
Alkaline (pH9, 3h) 6.2668 0.8596 0.4963
Osmotic (sorbitol 2h) 5.9639 0.8616 0.4974
CongoRed (3h) 6.8744 1.2775 0.7376
Cobalt chloride control 4.8231 0.9555 0.5517
Cobalt chloride 2mM 5.0858 1.8422 1.0636
Stress conditions 2 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 5.54 1.5884 0.917
Cold stimulation 14.4459 1.4456 0.8346
Scratched surface 15.3656 0.7861 0.4539
Ca2+, 200mM, 24h 7.0087 2.0721 1.1963
Cu2+, 2mM, 6h 4.3139 1.298 0.7494
Voriconazole 4.2568 0.9906 0.572
Trichoderma interaction, early 10.1282 1.3169 0.7603
Trichoderma interaction 60h 23.7347 14.088 8.1337
Cobalt chloride 2mM repeat 8.6144 2.1505 1.2416
Hypoxia 7.8796 1.4401 0.8315
Hypoxia control 8.3591 0.1282 0.074
Protoplastation control 4.9144 0.5803 0.4104
Protoplastation 3.5h 3.6533 1.4133 0.9994
Protoplastation 1.5h 3.5031 4.6707 3.3027

General data

Systematic name -
Protein id CopciAB_441992.T0
Description

Annotation summary

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
No records

SignalP

Prediction Start End Score
No records

Transmembrane domains

Domain n Start End Length
No records

InterPro

Accession Description
No records

GO

Go id Term Ontology
No records

KEGG

KEGG Orthology
No records

EggNOG

COG category Description
No records

CAZy

Class Family Subfamily
No records

Transcription factor

Group
No records

Conservation of CopciAB_441992 across fungi.

Arrow shows the origin of gene family containing CopciAB_441992.

Protein

Sequence id CopciAB_441992.T0
Sequence >CopciAB_441992.T0
MTPNPLDLFASIRIHGLVSSQEGERLSIELDRSVSFPIPVWHDPDQRPKDPEGDVSARPLSTADFLNLELEACIS
APHKPISSHSNPLALGYGRSGDVYPLEVVAIRQLPQSLFQSRVHHVDIEALKKSLPPLCMKVARPTYARSVAREA
WFYERLDKEELMGAVSPSCYGLFHTKVTSNLSILLPPDYDEVVEEQYERNPDGTSVMSEDESDRFMDDPFASHKS
SPWLSFRESKDSPTITALILERVGERMTMEEYAMDENRCVGILFPFNAFCWLTGSTGRNDINSIYQEDLRYALIR
HRDGRLPNVLRAPPTARICPIHNRAHRWFLVDYERSLLVTMREEEELYYQYTSLSSWVHCGGRDIPYGA
Length 369

Coding

Sequence id CopciAB_441992.T0
Sequence >CopciAB_441992.T0
ATGACGCCAAATCCGCTGGATCTATTCGCTAGTATTCGAATCCATGGCCTTGTCTCTTCGCAGGAAGGGGAGCGG
CTCAGCATTGAACTGGACCGCTCCGTCTCGTTCCCAATCCCTGTGTGGCACGATCCTGACCAGAGACCCAAAGAC
CCCGAGGGAGATGTCTCCGCGCGACCGCTTTCAACGGCAGATTTCTTAAATCTAGAGCTGGAAGCATGCATCTCT
GCCCCCCACAAGCCGATTAGCAGCCATTCCAATCCTCTCGCACTTGGGTATGGGCGGAGTGGAGACGTTTACCCA
CTCGAAGTTGTCGCCATTCGCCAGCTTCCACAGTCCCTTTTCCAGAGCCGCGTGCACCATGTCGACATCGAAGCC
CTGAAGAAGTCCCTACCCCCACTTTGCATGAAAGTGGCCAGACCCACGTACGCACGTTCCGTGGCCCGTGAAGCT
TGGTTTTACGAACGACTGGACAAAGAGGAACTTATGGGCGCCGTTTCACCGAGCTGCTACGGGCTATTCCACACC
AAGGTTACCTCCAACCTGTCTATCTTGCTCCCCCCAGACTACGATGAAGTAGTCGAGGAACAATATGAAAGAAAC
CCGGACGGCACATCGGTGATGTCTGAAGACGAGTCCGACAGATTTATGGACGATCCTTTCGCAAGCCACAAGTCA
TCTCCTTGGCTCTCATTCCGAGAATCGAAAGATTCTCCGACCATCACTGCTCTCATCCTCGAACGAGTCGGGGAG
AGAATGACGATGGAAGAATACGCGATGGACGAGAACAGGTGCGTCGGAATTCTTTTCCCATTCAATGCATTTTGC
TGGCTTACCGGATCCACTGGCAGAAACGACATAAACTCCATCTACCAGGAGGACTTGAGGTACGCCTTGATCCGT
CATCGCGATGGAAGGCTTCCTAATGTTCTGCGGGCCCCTCCAACCGCTCGAATCTGCCCTATCCACAATCGCGCG
CACCGTTGGTTTCTGGTCGATTATGAGCGCTCTCTACTAGTAACCATGAGGGAAGAGGAAGAGTTGTACTATCAG
TATACATCCTTATCATCCTGGGTGCATTGTGGGGGACGAGACATCCCTTATGGCGCATGA
Length 1110

Transcript

Sequence id CopciAB_441992.T0
Sequence >CopciAB_441992.T0
ACCATCGGACCGCACACACCAACTTCCCAACGCTGATTCGAATTTATCGAAATGACGCCAAATCCGCTGGATCTA
TTCGCTAGTATTCGAATCCATGGCCTTGTCTCTTCGCAGGAAGGGGAGCGGCTCAGCATTGAACTGGACCGCTCC
GTCTCGTTCCCAATCCCTGTGTGGCACGATCCTGACCAGAGACCCAAAGACCCCGAGGGAGATGTCTCCGCGCGA
CCGCTTTCAACGGCAGATTTCTTAAATCTAGAGCTGGAAGCATGCATCTCTGCCCCCCACAAGCCGATTAGCAGC
CATTCCAATCCTCTCGCACTTGGGTATGGGCGGAGTGGAGACGTTTACCCACTCGAAGTTGTCGCCATTCGCCAG
CTTCCACAGTCCCTTTTCCAGAGCCGCGTGCACCATGTCGACATCGAAGCCCTGAAGAAGTCCCTACCCCCACTT
TGCATGAAAGTGGCCAGACCCACGTACGCACGTTCCGTGGCCCGTGAAGCTTGGTTTTACGAACGACTGGACAAA
GAGGAACTTATGGGCGCCGTTTCACCGAGCTGCTACGGGCTATTCCACACCAAGGTTACCTCCAACCTGTCTATC
TTGCTCCCCCCAGACTACGATGAAGTAGTCGAGGAACAATATGAAAGAAACCCGGACGGCACATCGGTGATGTCT
GAAGACGAGTCCGACAGATTTATGGACGATCCTTTCGCAAGCCACAAGTCATCTCCTTGGCTCTCATTCCGAGAA
TCGAAAGATTCTCCGACCATCACTGCTCTCATCCTCGAACGAGTCGGGGAGAGAATGACGATGGAAGAATACGCG
ATGGACGAGAACAGGTGCGTCGGAATTCTTTTCCCATTCAATGCATTTTGCTGGCTTACCGGATCCACTGGCAGA
AACGACATAAACTCCATCTACCAGGAGGACTTGAGGTACGCCTTGATCCGTCATCGCGATGGAAGGCTTCCTAAT
GTTCTGCGGGCCCCTCCAACCGCTCGAATCTGCCCTATCCACAATCGCGCGCACCGTTGGTTTCTGGTCGATTAT
GAGCGCTCTCTACTAGTAACCATGAGGGAAGAGGAAGAGTTGTACTATCAGTATACATCCTTATCATCCTGGGTG
CATTGTGGGGGACGAGACATCCCTTATGGCGCATGAGTAGACCGGAATACCCGTCTGGAAACCTAGCATACAGTA
CTACCGTTACCTTACATATGGAAATGAATACGTATGGGCCCAGCCGACCCCATCCTCG
Length 1258

Gene

Sequence id CopciAB_441992.T0
Sequence >CopciAB_441992.T0
ACCATCGGACCGCACACACCAACTTCCCAACGCTGATTCGAATTTATCGAAATGACGCCAAATCCGCTGGATCTA
TTCGCTAGTATTCGAATCCATGGCCTTGTCTCTTCGCAGGAAGGGGAGCGGCTCAGCATTGAACTGGACCGCTCC
GTCTCGTTCCCAATCCCTGTGTGGCACGATCCTGACCAGAGACCCAAAGACCCCGAGGGAGATGTCTCCGCGCGA
CCGCTTTCAACGGCAGATTTCTTAAATCTAGAGCTGGAAGCATGCATCTCTGCCCCCCACAAGCCGATTAGCAGC
CATTCCAATCCTCTCGCACTTGGGTATGGGCGGAGTGGAGACGTTTACCCACTCGAAGTTGTCGCCATTCGCCAG
CTTCCACAGTCCCTTTTCCAGAGCCGCGTGCACCATGTCGACATCGAAGCCCTGAAGAAGTCCCTACCCCCACTT
TGCATGAAAGTGGCCAGACCCACGTACGCACGTTCCGTGGCCCGTGAAGCTTGGTTTTACGAACGACTGGACAAA
GAGGAACTTATGGGCGCCGTTTCACCGAGCTGCTACGGGCTATTCCACACCAAGGTTACCTCCAACCTGTCTATC
TTGCTCCCCCCAGACTACGATGAAGTAGTCGAGGAACAATATGAAAGAAACCCGGACGGCACATCGGTGATGTCT
GAAGACGAGTCCGACAGATTTATGGACGATCCTTTCGCAAGCCACAAGTCATCTCCTTGGCTCTCATTCCGAGAA
TCGAAAGATTCTCCGACCATCACTGCTCTCATCCTCGAACGAGTCGGGGAGAGAATGACGATGGAAGAATACGCG
ATGGACGAGAACAGGTGCGTCGGAATTCTTTTCCCATTCAATGCATTTTGCTGGCTTACCGGATCCACTGGCAGA
AACGACATAAACTCCATCTACCAGGAGGACTTGAGGTACGCCTTGATCCGTCATCGCGATGGAAGGCTTCCTAAT
GTTCTGCGGGCCCCTCCAACCGCTCGAATCTGCCCTATCCACAATCGCGCGCACCGTTGGTTTCTGGTCGATTAT
GAGCGCTCTCTACTAGTAACCATGAGGGAAGAGGAAGAGTTGTACTATCAGTATACATCCTTATCATCCTGGGTG
CATTGTGGGGGACGAGACATCCCTTATGGCGCATGAGTAGACCGGAATACCCGTCTGGAAACCTAGCATACAGTA
CTACCGTTACCTTACATATGGAAATGAATACGTATGGGCCCAGCCGACCCCATCCTCG
Length 1258