CopciAB_446920
Coprinopsis cinerea A43mutB43mut pab1-1 #326

General data

Systematic name CopciAB_446920 Strain Coprinopsis cinerea Okayama 7
Standard name - Synonyms 446920
Uniprot id Functional description
Location scaffold_10:1718104..1719646 Strand -
Gene length (nt) 1543 Transcript length (nt) 1365
CDS length (nt) 1038 Protein length (aa) 345

Reciprocal best hits in model fungi

Strain name Gene / Protein name

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
0

Expression

Name Summary Attribution Assay type
Carbon metabolism Transcriptional changes along alternative morphogenetic paths of C. cinerea Xie et al. 2020 RNA-Seq
Sample Mean cpm SD cpm Se of mean
sclerotia 0.1583 0.12 0.0693
oidia 0.7137 0.1995 0.1152
vegetative_mycelium 0.1441 0.0531 0.0307
primordia 0.8367 0.3023 0.1745
hyphal_knot 0.4109 0.3056 0.1765
young_fruiting_body 0.1355 0.1367 0.0789
Complex carbon sources 1 (long incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control - glucose 1.5918 0.8765 0.5061
Wheat bran 1.2109 0.1237 0.0714
Horse manure 1.0551 0.3794 0.2191
Oak leaves 0.8706 0.2364 0.1365
Hay 1.7498 0.5296 0.3057
Corn stalk 1.1896 0.3096 0.1788
Pectine 0.4875 0.137 0.0791
Microcrystalline cellulose 0.4499 0.2085 0.1204
Xylose 1.5594 0.4888 0.2822
Cellobiose 2.0096 0.4222 0.2438
Lignin 0.6075 0.4303 0.2484
Apple peels 0.6887 0.2098 0.1211
Coprinopsis challenged with bacteria Transcriptional response to Bacillus subtilis and Escherichia coli. Kombrink et al. 2018 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control 0.5652 0.2024 0.1168
Bsubtilis 0.5096 0.0875 0.0505
Ecoli 1.0986 0.048 0.0277
Early development 1 Time series expression profiling of basidiospore and oidium germination Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
BS 0h 0.0516 0.0893 0.0516
BS 4h 0.0941 0.1629 0.0941
BS 8h 0 0 0
BS 12h 0 0 0
Oidia 0 h 0.1687 0.1987 0.1147
Oidia 18 h 0.271 0.026 0.015
Sclerotia 0 0 0
Early development 2 Time series expression profiling of mycelial growth, light induction and fruiting body initiation. Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
DM 12h 0.1458 0.0715 0.0413
DM 36h 0.0451 0.039 0.0225
DM 60h 0.2883 0.0677 0.0391
DM 84h 0.438 0.2381 0.1375
DM 108h 0.3434 0.2049 0.1183
DM 132h 0.3108 0.0717 0.0414
DM 156hAE 0.8431 0.1707 0.0985
ELI1hAE 0.6281 0.4098 0.2366
ELI2hAE 0.1833 0.235 0.1357
LI2hAE 0.4458 0.2021 0.1167
LI6hAE 0.9232 0.9976 0.576
LI12hAE 0.7247 0.1 0.0578
LI18hAE 0.5866 0.0938 0.0541
LI 24hAE 1.2222 0.5834 0.3368
DM 156hAM 0.632 0.3197 0.1846
ELI1hAM 0.2543 0.1915 0.1106
ELI2hAM 0.3678 0.2805 0.1619
LI2hAM 0.2834 0.2094 0.1209
LI6hAM 0.3898 0.222 0.1282
LI12hAM 0.0657 0.066 0.0381
LI18hAM 0.2101 0.3048 0.176
LI 24hAM 0.8046 0.3701 0.2137
LI 24hHK 0.8387 0.2862 0.1652
L/D 6h 0.8651 0.36 0.2079
L/D 12h 1.4581 0.8225 0.4749
L/D 18h 0.4025 0.2665 0.1538
L/D 24h 0.5336 0.265 0.153
Fruiting body development RNA-Seq analysis of fruiting body development Krizsan et al. 2019 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Vegetative mycelium 1.5251 0.5979 0.3452
Hyphal knots 1.4486 0.7834 0.4523
Primordium 1 1.8191 0.3701 0.2137
Primordium 2 1.8853 0.6072 0.3506
Young Fruiting body cap 1.9015 1.6496 0.9524
Younf fruiting body gill 0.6245 0.3518 0.2031
Young fruiting body stipe 2.845 0.3282 0.1895
Mature fruiting body cap_gill 0.4477 0.5105 0.2947
Mature fruiting body stipe 3.3411 0.3138 0.1812
Nitrogen sources (12h incubation) Expression profiling on diverse nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Complete medium - control 1.525 0.0539 0.0311
NH4NO3 1.5997 1.0192 0.5884
Proline 0.6884 0.6228 0.3596
Tryptophan 0.5616 0.403 0.2327
Isoleucin 0.7782 0.2211 0.1277
Arginine 0.8881 0.333 0.1923
Metionine 2.0546 0.2687 0.1551
NaNO3 1.5537 0.0579 0.0334
Plant biomass (12h incubation) Expression profiling on diverse plant biomasses as carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 1.525 0.0539 0.0311
Citrus peel 1.6295 0.258 0.149
Poplar leaves 1.1416 0.0922 0.0532
Typha leaves 1.4626 0.3348 0.1933
Overwintered Salix leaves 1.0786 0.1967 0.1136
Reed flowering 1.3563 0.268 0.1547
Tigernut 1.4028 0.3143 0.1815
Energy cane 0.849 0.2963 0.1711
Guar gum 1.8845 0.3949 0.228
Apple peels 1.2091 0.1532 0.0884
Cellobiose 1.4683 0.4947 0.2856
Corn stalk 1.5052 0.5705 0.3294
Horse manure 1.4768 0.6385 0.3687
Lignin 1.2769 0.4035 0.233
Microcrystalline cellulose 0.7556 0.0909 0.0525
Oak leaves 1.0439 0.3705 0.2139
Pectin esterified 1.1695 0.6891 0.3978
Poplar sawdust 1.1531 0.4365 0.252
Wheat bran 1.3085 0.7018 0.4052
Chlamydomonas reinhardtii 0.8662 0.1296 0.0748
Vertatryl alcohol 0.947 0.2083 0.1202
Furfural 0.9854 0.0902 0.0521
Autoclaved mycelium 1.7497 0.6182 0.3569
Simple and complex carbon and nitrogen sources Expression profiling on diverse complex carbon and nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 1.1984 0.2172 0.1254
Ribose 1.2555 0.582 0.336
Mannose 1.0578 0.2848 0.2014
Fructose 0.7131 0.6787 0.3918
Arabinose 1.3216 0.6919 0.3994
Xylose 1.0774 0.2723 0.1572
Galacturonic acid 1.8716 0.7281 0.4203
Rhamnogalacturonan 1.5009 0.5534 0.3195
Pectin esterified 1.806 0.4154 0.2399
Polygalacturonic acid 1.1576 0.2688 0.1552
Sodium acetate 0.8506 0.2569 0.1483
No nitrogen 0.4307 0.2569 0.1483
BSA 1.0861 0.288 0.1663
Glutamine 0.8078 0.291 0.168
No phosphate 0.5308 0.2193 0.1266
No carbon 0.7773 0.3012 0.213
No sulphur 0.4726 0.2363 0.1364
Simple and complex carbon sources (12h incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 1.525 0.0539 0.0311
Amylose 1.4478 0.5198 0.3001
Fucose 1.2735 0.214 0.1235
Galactose 1.7019 0.2828 0.1633
Lactose 0.9127 0.1741 0.1005
Maltose 1.0254 0.4164 0.2404
Mannitol 0.9468 0.496 0.2863
Rhamnose 1.5273 0.4831 0.2789
Sorbitol 1.2089 0.3737 0.2157
Trehalose 1.374 0.2406 0.1389
Glycerol 0.906 0.2586 0.1493
Glucuronic acid 2.1903 0.201 0.116
Arabinan 1.2856 0.4038 0.2331
Galactan 1.3375 0.0893 0.0515
Galactomannan 2.0295 0.2837 0.1638
Glucan 1.6689 0.5652 0.3263
Xylan 1.1297 0.5077 0.2931
Xyloglucan 1.0597 0.3992 0.2305
Arabinogalactan 1.1623 0.2302 0.1329
Pectin 1.5227 0.6035 0.3485
Rhamnogalacturonan 1.9704 0.4916 0.2838
Polygalacturonic acid 1.1075 0.5167 0.2983
Mannan 1.8209 0.4835 0.2791
Amylopectin 1.544 0.5853 0.3379
Inulin 1.2833 0.5819 0.3359
BSA 0.6042 0.3165 0.1828
Starvation induced by water agar transfer Expression profiling on starvation induced by transfer to water agar Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Control 0.2883 0.0677 0.0391
2h WAT 0.085 0.074 0.0427
4h WAT 0.2563 0.0508 0.0293
8h WAT 0.2872 0.4037 0.2331
16h WAT 0.1991 0.1753 0.1012
24h WAT 0.0829 0.1436 0.0829
WAT hyphal knot -30h 0.0317 0.0549 0.0317
WAT hyphal knot -22h 0.0484 0.0439 0.0254
WAT hyphal knot -15h 0.4438 0.2644 0.1527
WAT hyphal knot -7.5h 0.3636 0.3763 0.2173
WAT hyphal knot 0.4421 0.1456 0.084
WAT hyphal knot +7.5h 0.2812 0.268 0.1547
Straw time series Time series expression profiling on straw as a carbon source Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 1.1678 0.1468 0.0848
Straw 3h 0.6253 0.0513 0.0296
Straw 6h 0.8501 0.263 0.1519
Straw 12h 0.6728 0.315 0.1819
Straw 24h 1.2847 1.3336 0.7699
Stress conditions 1 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 0.3382 0.3598 0.2078
Frost (-20C, 30min) 0.1795 0.0805 0.0465
Heat shock (47C, 2h) 0.1261 0.1787 0.1032
High CO2 0.2695 0.4129 0.2384
Drought (4% agar, 12h) 0.5841 0.2508 0.1448
Oxidative (1mM H2O2, 3h) 0.1416 0.1227 0.0708
Acidic (pH4, 3h) 0.8556 0.4929 0.2846
Alkaline (pH9, 3h) 0.5751 0.1707 0.0986
Osmotic (sorbitol 2h) 0.0323 0.0559 0.0323
CongoRed (3h) 0.2541 0.1403 0.081
Cobalt chloride control 0.3773 0.2299 0.1327
Cobalt chloride 2mM 0.0887 0.0517 0.0298
Stress conditions 2 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 0.8345 0.6413 0.3703
Cold stimulation 0.1694 0.1063 0.0614
Scratched surface 0.326 0.1784 0.103
Ca2+, 200mM, 24h 0.2428 0.2491 0.1438
Cu2+, 2mM, 6h 0.024 0.0415 0.024
Voriconazole 0.3181 0.1492 0.0861
Trichoderma interaction, early 0.1843 0.2626 0.1516
Trichoderma interaction 60h 0.5066 0.8775 0.5066
Cobalt chloride 2mM repeat 0.2564 0.2671 0.1542
Hypoxia 0.2536 0.2278 0.1315
Hypoxia control 0.3238 0.3793 0.219
Protoplastation control 0.5485 0.161 0.1138
Protoplastation 3.5h 0 0 0
Protoplastation 1.5h 0.5702 0.2397 0.1695

General data

Systematic name -
Protein id CopciAB_446920.T0
Description

Annotation summary

0 100 200 300 345

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
Pfam PF17667 Fungal protein kinase IPR040976 34 185

SignalP

Prediction Start End Score
No records

Transmembrane domains

Domain n Start End Length
No records

InterPro

Accession Description
IPR040976 Fungal-type protein kinase
IPR011009 Protein kinase-like domain superfamily

GO

Go id Term Ontology
No records

KEGG

KEGG Orthology
No records

EggNOG

COG category Description
No records

CAZy

Class Family Subfamily
No records

Transcription factor

Group
No records

Conservation of CopciAB_446920 across fungi.

Arrow shows the origin of gene family containing CopciAB_446920.

Protein

Sequence id CopciAB_446920.T0
Sequence >CopciAB_446920.T0
MKEAQLNTESPALPTRSGKRSSGILQHTLHDYSEVIERPTPLQHHPRTHRRTLFKDRCTPFYGVPNHRVAFEVCK
DLVNGLDLLRKAGFLHRNISGSTCILNYNRDAQIYRAKLVDLEYCKRYQETGFHDPKSVSREFAAVEVMDGEWNL
AKSGLEILRLRKTLPPFHRHYYHDLESLFKLLTWYTTTYLPIDRDKNQEIVANLDLVGWKTKVFDVLFPRESHLE
RRRNLWERPNKVYSDLMFVVGWPEETVAILLSLSEIPSHFESEYTALYRNPPQDKAVRWPDARFNDSLYKKFINT
LDHVATHLGTVGSVSMCGLLNEGRMKNKRPGEEKDETDRIPKKRG
Length 345

Coding

Sequence id CopciAB_446920.T0
Sequence >CopciAB_446920.T0
ATGAAGGAAGCACAATTAAACACTGAATCGCCGGCTCTACCAACACGGTCGGGAAAACGCTCTTCTGGGATACTT
CAACATACATTACACGACTATTCAGAAGTCATCGAACGTCCGACACCTCTCCAGCACCATCCACGCACCCATCGT
CGCACGCTGTTCAAGGACAGGTGTACGCCATTTTACGGAGTTCCAAATCACCGTGTTGCATTTGAGGTTTGCAAA
GACCTCGTTAATGGTCTGGACTTGTTGCGGAAAGCAGGGTTCTTGCATCGGAATATCAGCGGCTCCACCTGCATT
TTGAACTACAACAGGGATGCGCAAATCTATCGGGCTAAGTTGGTAGATTTGGAGTATTGCAAGCGGTATCAGGAG
ACAGGATTCCATGATCCCAAATCCGTGTCGCGCGAATTTGCCGCTGTTGAAGTCATGGATGGCGAGTGGAACCTC
GCGAAGAGTGGCCTGGAAATCCTCCGGTTAAGAAAAACACTCCCTCCCTTCCATCGACATTACTACCACGATCTA
GAGTCGCTCTTCAAACTACTAACCTGGTACACAACCACATATTTGCCTATCGACAGGGACAAAAATCAGGAAATC
GTGGCTAATCTCGACCTTGTCGGTTGGAAGACAAAGGTCTTTGATGTTTTGTTCCCGCGGGAATCCCATTTAGAG
CGCCGCCGAAACCTATGGGAAAGACCAAACAAGGTTTACAGTGACTTGATGTTCGTCGTCGGATGGCCAGAAGAA
ACGGTCGCTATCCTCCTCAGCCTCAGCGAGATACCTTCTCACTTTGAATCGGAATACACGGCACTTTATCGGAAT
CCTCCACAGGATAAAGCAGTGCGGTGGCCCGATGCAAGGTTCAACGATTCACTATACAAGAAATTTATCAACACT
CTGGACCATGTCGCTACTCATCTTGGAACAGTTGGTTCTGTTTCAATGTGCGGTTTACTGAATGAGGGGAGGATG
AAGAACAAGAGGCCCGGGGAAGAAAAGGACGAGACTGACAGGATCCCTAAGAAGCGGGGATGA
Length 1038

Transcript

Sequence id CopciAB_446920.T0
Sequence >CopciAB_446920.T0
GCTTCCTACACCTTCACCAGTCATTACTTCGTCTAAAGTCACCTGGAGGCTAGGAGCTAAAGCGTCTACCTCTCG
CTGTTACCTCACTCTAAAAGATGAAGGAAGCACAATTAAACACTGAATCGCCGGCTCTACCAACACGGTCGGGAA
AACGCTCTTCTGGGATACTTCAACATACATTACACGACTATTCAGAAGTCATCGAACGTCCGACACCTCTCCAGC
ACCATCCACGCACCCATCGTCGCACGCTGTTCAAGGACAGGTGTACGCCATTTTACGGAGTTCCAAATCACCGTG
TTGCATTTGAGGTTTGCAAAGACCTCGTTAATGGTCTGGACTTGTTGCGGAAAGCAGGGTTCTTGCATCGGAATA
TCAGCGGCTCCACCTGCATTTTGAACTACAACAGGGATGCGCAAATCTATCGGGCTAAGTTGGTAGATTTGGAGT
ATTGCAAGCGGTATCAGGAGACAGGATTCCATGATCCCAAATCCGTGTCGCGCGAATTTGCCGCTGTTGAAGTCA
TGGATGGCGAGTGGAACCTCGCGAAGAGTGGCCTGGAAATCCTCCGGTTAAGAAAAACACTCCCTCCCTTCCATC
GACATTACTACCACGATCTAGAGTCGCTCTTCAAACTACTAACCTGGTACACAACCACATATTTGCCTATCGACA
GGGACAAAAATCAGGAAATCGTGGCTAATCTCGACCTTGTCGGTTGGAAGACAAAGGTCTTTGATGTTTTGTTCC
CGCGGGAATCCCATTTAGAGCGCCGCCGAAACCTATGGGAAAGACCAAACAAGGTTTACAGTGACTTGATGTTCG
TCGTCGGATGGCCAGAAGAAACGGTCGCTATCCTCCTCAGCCTCAGCGAGATACCTTCTCACTTTGAATCGGAAT
ACACGGCACTTTATCGGAATCCTCCACAGGATAAAGCAGTGCGGTGGCCCGATGCAAGGTTCAACGATTCACTAT
ACAAGAAATTTATCAACACTCTGGACCATGTCGCTACTCATCTTGGAACAGTTGGTTCTGTTTCAATGTGCGGTT
TACTGAATGAGGGGAGGATGAAGAACAAGAGGCCCGGGGAAGAAAAGGACGAGACTGACAGGATCCCTAAGAAGC
GGGGATGAACAGTGGAGGTTAGCGACAGTCGGAGTCGGAAACGGTGAAGTAATAGGCGCCCGTTCGTGTCCCAAA
GTCCGCCTGATTAATTATGCATCGTGGCGGCGATATATTGTTACTGGCTGTCTTTACTTGGAAATGTGACTAATG
CCCACTGTAGTCCCCAAAGTCCGTCTGGGCTGACGGCAAGACGCGCATTATTACTGTATTAGCAGAATATACTGC
CATTTGAAACTGGAA
Length 1365

Gene

Sequence id CopciAB_446920.T0
Sequence >CopciAB_446920.T0
GCTTCCTACACCTTCACCAGTCATTACTTCGTCTAAAGTCACCTGGAGGCTAGGAGCTAAAGCGTCTACCTCTCG
CTGTTACCTCACTCTAAAAGATGAAGGAAGCACAATTAAACACTGAATCGCCGGTGAGCTCAGGCTTGATCTCCC
TGTAAGCCCTCCGGCACTGATTCATTCCTCGGCATGCAAGGCTCTACCAACACGGTCGGGAAAACGCTCTTCTGG
GATACTTCAACATACATTACACGACTATTCAGAAGTCATCGAACGTCCGACACCTCTCCAGCACCATCCACGCAC
CCATCGTCGCACGCTGTTCAAGGACAGGTGTACGCCATTTTACGGAGTTCCAAATCACCGTGTTGCATTTGAGGT
TTGCAAAGACCTCGTTAATGGTACGCTACGATGTCTGGCTCGGTGTCACCTTTAGATCTGACAACAGAGCCAGGT
CTGGACTTGTTGCGGAAAGCAGGGTTCTTGCATCGGAATATCAGCGGCTCCACCTGCATTTTGAACTACAACAGG
GATGCGCAAATCTATCGGGCTAAGTTGGTAGATTTGGAGTATTGCAAGCGGTATCAGGAGACAGGATTCCATGAT
CCCAAATCCGTTTGTATCCCGATGCTCTGTGTGACCCGCCACCGTTGAACGTTGACCATTGGTCTAATCCAGGTG
TCGCGCGAATTTGCCGCTGTTGAAGTCATGGATGGCGAGTGGAACCTCGCGAAGAGTGGCCTGGAAATCCTCCGG
TTAAGAAAAACACTCCCTCCCTTCCATCGACATTACTACCACGATCTAGAGTCGCTCTTCAAACTACTAACCTGG
TACACAACCACATATTTGCCTATCGACAGGGACAAAAATCAGGAAATCGTGGCTAATCTCGACCTTGTCGGTTGG
AAGACAAAGGTCTTTGATGTTTTGTTCCCGCGGGAATCCCATTTAGAGCGCCGCCGAAACCTATGGGAAAGACCA
AACAAGGTTTACAGTGACTTGATGTTCGTCGTCGGATGGCCAGAAGAAACGGTCGCTATCCTCCTCAGCCTCAGC
GAGATACCTTCTCACTTTGAATCGGAATACACGGCACTTTATCGGAATCCTCCACAGGATAAAGCAGTGCGGTGG
CCCGATGCAAGGTTCAACGATTCACTATACAAGAAATTTATCAACACTCTGGACCATGTCGCTACTCATCTTGGA
ACAGTTGGTTCTGTTTCAATGTGCGGTTTACTGAATGAGGGGAGGATGAAGAACAAGAGGCCCGGGGAAGAAAAG
GACGAGACTGACAGGATCCCTAAGAAGCGGGGATGAACAGTGGAGGTTAGCGACAGTCGGAGTCGGAAACGGTGA
AGTAATAGGCGCCCGTTCGTGTCCCAAAGTCCGCCTGATTAATTATGCATCGTGGCGGCGATATATTGTTACTGG
CTGTCTTTACTTGGAAATGTGACTAATGCCCACTGTAGTCCCCAAAGTCCGTCTGGGCTGACGGCAAGACGCGCA
TTATTACTGTATTAGCAGAATATACTGCCATTTGAAACTGGAA
Length 1543