CopciAB_453453
Coprinopsis cinerea A43mutB43mut pab1-1 #326

General data

Systematic name CopciAB_453453 Strain Coprinopsis cinerea Okayama 7
Standard name - Synonyms 453453
Uniprot id Functional description
Location scaffold_7:2300905..2302197 Strand -
Gene length (nt) 1293 Transcript length (nt) 1158
CDS length (nt) 816 Protein length (aa) 271

Reciprocal best hits in model fungi

Strain name Gene / Protein name

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
0

Expression

Name Summary Attribution Assay type
Carbon metabolism Transcriptional changes along alternative morphogenetic paths of C. cinerea Xie et al. 2020 RNA-Seq
Sample Mean cpm SD cpm Se of mean
sclerotia 1.0854 0.5215 0.3011
oidia 1.1174 0.6849 0.3954
vegetative_mycelium 1.0591 0.5662 0.3269
primordia 0.2627 0.0443 0.0256
hyphal_knot 0.3423 0.0767 0.0443
young_fruiting_body 0.0885 0.0767 0.0443
Complex carbon sources 1 (long incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control - glucose 1.941 0.2763 0.1595
Wheat bran 3.1031 1.3622 0.7865
Horse manure 1.677 0.8663 0.5002
Oak leaves 1.8334 0.1839 0.1062
Hay 1.6431 0.4485 0.2589
Corn stalk 1.6713 0.3169 0.183
Pectine 1.8616 0.3084 0.178
Microcrystalline cellulose 2.9306 0.315 0.1819
Xylose 1.5335 0.4147 0.2395
Cellobiose 1.8252 0.8847 0.5108
Lignin 1.6487 0.9409 0.5432
Apple peels 0.8401 0.4565 0.2636
Coprinopsis challenged with bacteria Transcriptional response to Bacillus subtilis and Escherichia coli. Kombrink et al. 2018 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control 1.6984 0.2463 0.1422
Bsubtilis 0.8211 0.2989 0.1726
Ecoli 0.822 0.1776 0.1025
Early development 1 Time series expression profiling of basidiospore and oidium germination Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
BS 0h 0.0999 0.173 0.0999
BS 4h 0.0542 0.0469 0.0271
BS 8h 0.0628 0.0582 0.0336
BS 12h 0.1407 0.2438 0.1407
Oidia 0 h 0.0821 0.1422 0.0821
Oidia 18 h 0.0618 0.095 0.0548
Sclerotia 0.0845 0.1095 0.0632
Early development 2 Time series expression profiling of mycelial growth, light induction and fruiting body initiation. Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
DM 12h 0.601 0.3185 0.1839
DM 36h 0.3472 0.127 0.0733
DM 60h 1.0149 0.9481 0.5474
DM 84h 0.8685 0.5137 0.2966
DM 108h 0.9457 0.45 0.2598
DM 132h 0.6614 0.4665 0.2693
DM 156hAE 1.6397 0.3005 0.1735
ELI1hAE 1.0202 0.8753 0.5053
ELI2hAE 0.54 0.1585 0.0915
LI2hAE 0.1705 0.0952 0.0549
LI6hAE 0.8898 0.5929 0.3423
LI12hAE 0.445 0.1188 0.0686
LI18hAE 0.3061 0.5302 0.3061
LI 24hAE 1.1397 0.5324 0.3074
DM 156hAM 1.2508 1.1814 0.6821
ELI1hAM 0.2602 0.2445 0.1411
ELI2hAM 0.5313 0.5811 0.3355
LI2hAM 0.4124 0.4325 0.2497
LI6hAM 0.3869 0.4586 0.2648
LI12hAM 0.4877 0.3311 0.1912
LI18hAM 0.0873 0.032 0.0185
LI 24hAM 0.2089 0.05 0.0289
LI 24hHK 0.3753 0.3891 0.2246
L/D 6h 0.8576 0.3429 0.198
L/D 12h 1.3907 0.6585 0.3802
L/D 18h 0.2568 0.2303 0.133
L/D 24h 0.6434 0.2608 0.1506
Fruiting body development RNA-Seq analysis of fruiting body development Krizsan et al. 2019 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Vegetative mycelium 1.1085 0.1714 0.0989
Hyphal knots 0.7946 0.27 0.1559
Primordium 1 1.506 1.1035 0.6371
Primordium 2 1.7096 0.2421 0.1398
Young Fruiting body cap 1.2616 0.3933 0.2271
Younf fruiting body gill 0.213 0.073 0.0421
Young fruiting body stipe 1.0455 0.0591 0.0341
Mature fruiting body cap_gill 1.3299 0.1834 0.1059
Mature fruiting body stipe 4.8023 0.4716 0.2723
Nitrogen sources (12h incubation) Expression profiling on diverse nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Complete medium - control 0.7716 0.0186 0.0108
NH4NO3 1.2489 0.4223 0.2438
Proline 0.8916 0.6221 0.3592
Tryptophan 0.9238 0.7973 0.4603
Isoleucin 0.7884 0.4553 0.2629
Arginine 1.1255 0.3276 0.1892
Metionine 0.3723 0.3231 0.1865
NaNO3 0.7425 0.0648 0.0374
Plant biomass (12h incubation) Expression profiling on diverse plant biomasses as carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 0.7716 0.0186 0.0108
Citrus peel 0.3103 0.2989 0.1726
Poplar leaves 0.7209 0.3503 0.2022
Typha leaves 0.9321 0.2002 0.1156
Overwintered Salix leaves 0.9709 0.2895 0.1672
Reed flowering 0.7775 0.6644 0.3836
Tigernut 0.7631 0.3064 0.1769
Energy cane 1.1783 0.383 0.2211
Guar gum 0.8729 0.8088 0.467
Apple peels 1.3177 0.237 0.1368
Cellobiose 1.5191 0.552 0.3187
Corn stalk 1.9938 0.458 0.2644
Horse manure 1.809 0.4189 0.2419
Lignin 0.3003 0.2663 0.1538
Microcrystalline cellulose 0.651 0.2034 0.1174
Oak leaves 1.3125 0.2001 0.1155
Pectin esterified 1.8492 0.4347 0.251
Poplar sawdust 0.9381 0.4804 0.2774
Wheat bran 1.3353 0.6436 0.3716
Chlamydomonas reinhardtii 1.1678 0.3618 0.2089
Vertatryl alcohol 0.3857 0.3321 0.1917
Furfural 0.3301 0.3384 0.1953
Autoclaved mycelium 0.4446 0.2487 0.1436
Simple and complex carbon and nitrogen sources Expression profiling on diverse complex carbon and nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 3.6091 0.8992 0.5192
Ribose 2.0542 0.4165 0.2405
Mannose 2.3975 0.4946 0.3497
Fructose 1.9542 0.4685 0.2705
Arabinose 2.5052 1.1806 0.6816
Xylose 1.4659 0.6064 0.3501
Galacturonic acid 2.1638 0.9448 0.5455
Rhamnogalacturonan 2.6096 0.6178 0.3567
Pectin esterified 1.3931 0.4549 0.2627
Polygalacturonic acid 2.5578 0.378 0.2182
Sodium acetate 2.1622 0.6438 0.3717
No nitrogen 1.5506 0.3494 0.2017
BSA 1.825 0.1673 0.0966
Glutamine 2.1008 0.5587 0.3225
No phosphate 1.7618 0.9509 0.549
No carbon 1.5276 0.1009 0.0714
No sulphur 1.8863 0.4065 0.2347
Simple and complex carbon sources (12h incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 0.7716 0.0186 0.0108
Amylose 1.2653 0.3179 0.1836
Fucose 1.2666 0.3187 0.184
Galactose 1.1572 0.2126 0.1227
Lactose 0.8733 0.1776 0.1025
Maltose 0.7481 0.4121 0.2379
Mannitol 0.3762 0.2428 0.1402
Rhamnose 0.7753 0.4379 0.2528
Sorbitol 0.7438 0.2052 0.1185
Trehalose 1.5594 0.2761 0.1594
Glycerol 0.9736 0.1758 0.1015
Glucuronic acid 1.3519 0.4236 0.2446
Arabinan 1.0033 0.2651 0.153
Galactan 0.8641 0.3627 0.2094
Galactomannan 1.3111 0.3381 0.1952
Glucan 1.2781 0.7057 0.4074
Xylan 1.5263 0.423 0.2442
Xyloglucan 1.312 0.3536 0.2042
Arabinogalactan 1.2434 0.2117 0.1222
Pectin 0.7011 0.6642 0.3835
Rhamnogalacturonan 1.1597 0.5575 0.3219
Polygalacturonic acid 0.8498 0.1772 0.1023
Mannan 1.1502 0.2206 0.1274
Amylopectin 1.0428 0.1568 0.0905
Inulin 1.195 0.2558 0.1477
BSA 0.4986 0.2957 0.1707
Starvation induced by water agar transfer Expression profiling on starvation induced by transfer to water agar Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Control 1.0149 0.9481 0.5474
2h WAT 0.1308 0.0434 0.0251
4h WAT 0.389 0.1306 0.0754
8h WAT 0.156 0.2702 0.156
16h WAT 0.8602 0.5942 0.3431
24h WAT 0.0915 0.1584 0.0915
WAT hyphal knot -30h 0.0746 0.0912 0.0526
WAT hyphal knot -22h 0.1081 0.1634 0.0943
WAT hyphal knot -15h 0.2719 0.4367 0.2521
WAT hyphal knot -7.5h 0.2128 0.1967 0.1136
WAT hyphal knot 0.0421 0.073 0.0421
WAT hyphal knot +7.5h 0.7511 0.1586 0.0915
Straw time series Time series expression profiling on straw as a carbon source Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 0.5502 0.3541 0.2044
Straw 3h 0.5663 0.201 0.116
Straw 6h 0.7794 0.5561 0.321
Straw 12h 1.5563 0.4398 0.2539
Straw 24h 1.5755 0.5147 0.2971
Stress conditions 1 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 0.0996 0.1725 0.0996
Frost (-20C, 30min) 0.3713 0.3216 0.1857
Heat shock (47C, 2h) 0.3432 0.3198 0.1847
High CO2 0.52 0.2305 0.1331
Drought (4% agar, 12h) 0.4715 0.248 0.1432
Oxidative (1mM H2O2, 3h) 0.063 0.0967 0.0558
Acidic (pH4, 3h) 0.6147 0.1487 0.0858
Alkaline (pH9, 3h) 0.6901 0.2279 0.1316
Osmotic (sorbitol 2h) 0.4281 0.5627 0.3249
CongoRed (3h) 0.2662 0.2337 0.1349
Cobalt chloride control 0.442 0.0905 0.0522
Cobalt chloride 2mM 0.3389 0.0408 0.0235
Stress conditions 2 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 1.5011 1.9128 1.1044
Cold stimulation 1.1105 1.1186 0.6458
Scratched surface 0.2817 0.0439 0.0253
Ca2+, 200mM, 24h 0.6779 0.6373 0.368
Cu2+, 2mM, 6h 0 0 0
Voriconazole 0.2569 0.3243 0.1873
Trichoderma interaction, early 0.4014 0.5199 0.3002
Trichoderma interaction 60h 1.1781 2.0406 1.1781
Cobalt chloride 2mM repeat 0.4084 0.4926 0.2844
Hypoxia 0.9244 0.8767 0.5062
Hypoxia control 0.4228 0.242 0.1397
Protoplastation control 0.2955 0.0432 0.0305
Protoplastation 3.5h 0 0 0
Protoplastation 1.5h 0.0501 0.0708 0.0501

General data

Systematic name -
Protein id CopciAB_453453.T0
Description

Annotation summary

0 100 200 271

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
Pfam PF17667 Fungal protein kinase IPR040976 6 141

SignalP

Prediction Start End Score
No records

Transmembrane domains

Domain n Start End Length
No records

InterPro

Accession Description
IPR000719 Protein kinase domain
IPR008266 Tyrosine-protein kinase, active site
IPR040976 Fungal-type protein kinase
IPR011009 Protein kinase-like domain superfamily

GO

Go id Term Ontology
GO:0004672 protein kinase activity MF
GO:0005524 ATP binding MF
GO:0006468 protein phosphorylation BP

KEGG

KEGG Orthology
No records

EggNOG

COG category Description
No records

CAZy

Class Family Subfamily
No records

Transcription factor

Group
No records

Conservation of CopciAB_453453 across fungi.

Arrow shows the origin of gene family containing CopciAB_453453.

Protein

Sequence id CopciAB_453453.T0
Sequence >CopciAB_453453.T0
MIKNDDTRIRRRIVLKERCTTFYEVPNLKIACKIGKDIVKGLNLLREAGIIHRDISASNCLIYFDEERESHCGKI
TDLDYCKEYLKIGAHDPISGTKDFMAVEVEKGSFIGRAHRSEAPKLVFHRHYLHDLESLYWLMVWCAFVLVPVDI
QQVDVEMWEKAFFQLFPFEAPVKSVSGKGLALAFPGDLSSSLQECGWDENTLAALDDLFNLGNDLRNEYARLQKI
PQEASGGRRWAQEHFNADIYGKFSKVLDSVGSLTNSRPCGIPVGPD
Length 271

Coding

Sequence id CopciAB_453453.T0
Sequence >CopciAB_453453.T0
ATGATTAAGAACGACGATACTCGCATCCGGCGGCGCATAGTTCTCAAGGAGAGGTGCACGACGTTCTACGAAGTC
CCGAATTTGAAGATAGCTTGCAAGATTGGGAAGGACATCGTCAAAGGGTTGAATCTCTTGCGAGAAGCAGGCATT
ATCCACCGAGACATCAGTGCGAGCAATTGTTTGATTTATTTCGACGAAGAAAGGGAGAGTCACTGCGGGAAGATC
ACTGATCTGGATTACTGCAAGGAATATCTTAAAATCGGAGCTCATGATCCCATCTCGGGCACGAAAGATTTCATG
GCCGTCGAAGTGGAAAAGGGATCATTCATTGGCCGTGCTCATAGGAGCGAGGCACCCAAGCTGGTGTTTCACCGG
CATTACCTGCATGACCTAGAGTCACTCTACTGGCTCATGGTATGGTGTGCCTTTGTCCTGGTTCCCGTCGACATT
CAGCAAGTCGATGTGGAAATGTGGGAGAAAGCGTTCTTCCAATTATTCCCATTTGAGGCACCAGTGAAATCGGTA
TCGGGAAAAGGATTGGCGCTCGCTTTCCCTGGCGATTTGTCGTCATCGCTGCAGGAATGTGGATGGGATGAGAAT
ACCCTCGCTGCCTTGGATGACCTTTTCAACCTCGGGAACGACCTCCGGAACGAATATGCCCGGCTTCAAAAGATA
CCCCAGGAAGCAAGCGGCGGTCGTCGATGGGCTCAGGAACACTTTAATGCCGACATATACGGCAAGTTCTCCAAA
GTCTTGGACAGCGTTGGAAGCCTGACGAACAGCAGACCATGTGGAATACCCGTGGGACCTGATTGA
Length 816

Transcript

Sequence id CopciAB_453453.T0
Sequence >CopciAB_453453.T0
AAAGCCGTTCTTTCAAACTCATTGCTCGAACAGCGACAAGTTTCAACGTGCAATTAACCAGCACGCATTGGCGAC
TCTAGATAAAGGGGAACGGGCCAAGGAGACGTGTCAGCTATGATTAAGAACGACGATACTCGCATCCGGCGGCGC
ATAGTTCTCAAGGAGAGGTGCACGACGTTCTACGAAGTCCCGAATTTGAAGATAGCTTGCAAGATTGGGAAGGAC
ATCGTCAAAGGGTTGAATCTCTTGCGAGAAGCAGGCATTATCCACCGAGACATCAGTGCGAGCAATTGTTTGATT
TATTTCGACGAAGAAAGGGAGAGTCACTGCGGGAAGATCACTGATCTGGATTACTGCAAGGAATATCTTAAAATC
GGAGCTCATGATCCCATCTCGGGCACGAAAGATTTCATGGCCGTCGAAGTGGAAAAGGGATCATTCATTGGCCGT
GCTCATAGGAGCGAGGCACCCAAGCTGGTGTTTCACCGGCATTACCTGCATGACCTAGAGTCACTCTACTGGCTC
ATGGTATGGTGTGCCTTTGTCCTGGTTCCCGTCGACATTCAGCAAGTCGATGTGGAAATGTGGGAGAAAGCGTTC
TTCCAATTATTCCCATTTGAGGCACCAGTGAAATCGGTATCGGGAAAAGGATTGGCGCTCGCTTTCCCTGGCGAT
TTGTCGTCATCGCTGCAGGAATGTGGATGGGATGAGAATACCCTCGCTGCCTTGGATGACCTTTTCAACCTCGGG
AACGACCTCCGGAACGAATATGCCCGGCTTCAAAAGATACCCCAGGAAGCAAGCGGCGGTCGTCGATGGGCTCAG
GAACACTTTAATGCCGACATATACGGCAAGTTCTCCAAAGTCTTGGACAGCGTTGGAAGCCTGACGAACAGCAGA
CCATGTGGAATACCCGTGGGACCTGATTGACGCCTATAATTGTCCTCTCAAAGTCCGCCCGTGTCGACATCGCGG
CGCAGATTATGGCCACTTTTTTGAATAGCCATCTTCAGTAGATTGTACTCGAGTAGTGCCCATCATAGTAACTAA
AGTCCGTCTGGGCCGACGGCAAGATGTGCTGTATTACAGTTCTTGCCTTTGGAATTGGCCATTTGTACCATTTTT
AGGTTTTCCCCGCTCAGCATCTCGTTTCTAGAC
Length 1158

Gene

Sequence id CopciAB_453453.T0
Sequence >CopciAB_453453.T0
AAAGCCGTTCTTTCAAACTCATTGCTCGAACAGCGACAAGTTTCAACGTGCAATTAACCAGCACGCATTGGCGAC
TCTAGATAAAGGGGAACGGGCCAAGGAGACGTGTCAGCTATGATTAAGAACGACGATACTCGCATCCGGCGGCGC
ATAGTTCTCAAGGAGAGGTGCACGACGTTCTACGAAGTCCCGAATTTGAAGATAGCTTGCAAGATTGGGAAGGAC
ATCGTCAAAGGTACAGTAGACTTCGTCAATGTCGAGTACTCCGATTACCAGTAGGCATTTCTCATCTCACAAATT
CTCTCTTCTCTTCAGGGTTGAATCTCTTGCGAGAAGCAGGCATTATCCACCGAGACATCAGTGCGAGCAATTGTT
TGATTTATTTCGACGAAGAAAGGGAGAGTCACTGCGGGAAGATCACTGATCTGGATTACTGCAAGGAATATCTTA
AAATCGGAGCTCATGATCCCATCTCGGTGAGGGTCAAAATCACCTTAGGTCAATGCCGAATATACTGATGTGCGG
CACCAGGGCACGAAAGATTTCATGGCCGTCGAAGTGGAAAAGGGATCATTCATTGGCCGTGCTCATAGGAGCGAG
GCACCCAAGCTGGTGTTTCACCGGCATTACCTGCATGACCTAGAGTCACTCTACTGGCTCATGGTATGGTGTGCC
TTTGTCCTGGTTCCCGTCGACATTCAGCAAGTCGATGTGGAAATGTGGGAGAAAGCGTTCTTCCAATTATTCCCA
TTTGAGGCACCAGTGAAATCGGTATCGGGAAAAGGATTGGCGCTCGCTTTCCCTGGCGATTTGTCGTCATCGCTG
CAGGAATGTGGATGGGATGAGAATACCCTCGCTGCCTTGGATGACCTTTTCAACCTCGGGAACGACCTCCGGAAC
GAATATGCCCGGCTTCAAAAGATACCCCAGGAAGCAAGCGGCGGTCGTCGATGGGCTCAGGAACACTTTAATGCC
GACATATACGGCAAGTTCTCCAAAGTCTTGGACAGCGTTGGAAGCCTGACGAACAGCAGACCATGTGGAATACCC
GTGGGACCTGATTGACGCCTATAATTGTCCTCTCAAAGTCCGCCCGTGTCGACATCGCGGCGCAGATTATGGCCA
CTTTTTTGAATAGCCATCTTCAGTAGATTGTACTCGAGTAGTGCCCATCATAGTAACTAAAGTCCGTCTGGGCCG
ACGGCAAGATGTGCTGTATTACAGTTCTTGCCTTTGGAATTGGCCATTTGTACCATTTTTAGGTTTTCCCCGCTC
AGCATCTCGTTTCTAGAC
Length 1293