Systematic name | CopciAB_456276 | Strain | Coprinopsis cinerea Okayama 7 |
---|---|---|---|
Standard name | - | Synonyms | 456276 |
Uniprot id | Functional description | Protein tyrosine kinase | |
Location | scaffold_5:1535769..1537612 | Strand | - |
Gene length (nt) | 1844 | Transcript length (nt) | 1732 |
CDS length (nt) | 1443 | Protein length (aa) | 480 |
Strain name | Gene / Protein name |
---|---|
Saccharomyces cerevisiae | YPL026C_SKS1 |
Schizosaccharomyces pombe | ran1 |
Aspergillus nidulans | AN4935_ran1 |
Neurospora crassa | stk-39_NCU06230 |
Strain name | Gene / Protein name | Pident | E-value | Bits |
---|---|---|---|---|
Agrocybe aegerita | Agrae_CAA7259868 | 45 | 3.986E-109 | 360 |
Hypsizygus marmoreus strain 51987-8 | Hypma_RDB22815 | 42.8 | 2.878E-104 | 346 |
Lentinula edodes W1-26 v1.0 | Lentinedodes1_14060 | 45.1 | 5.725E-103 | 342 |
Lentinula edodes NBRC 111202 | Lenedo1_1099187 | 43.5 | 1.552E-99 | 332 |
Agaricus bisporus var. burnettii JB137-S8 | Agabi_varbur_1_73057 | 40.5 | 1.455E-96 | 323 |
Agaricus bisporus var bisporus (H97) | Agabi_varbisH97_2_68556 | 51 | 9.799E-90 | 303 |
Grifola frondosa | Grifr_OBZ78091 | 38.5 | 6.984E-86 | 292 |
Pleurotus ostreatus PC15 | PleosPC15_2_1089098 | 53.6 | 6.907E-85 | 289 |
Pleurotus ostreatus PC9 | PleosPC9_1_48224 | 54.2 | 3.443E-83 | 284 |
Pleurotus eryngii ATCC 90797 | Pleery1_1391632 | 53.7 | 1.991E-82 | 282 |
Schizophyllum commune H4-8 | Schco3_2253810 | 38.7 | 2.628E-79 | 273 |
Ganoderma sp. 10597 SS1 v1.0 | Gansp1_116747 | 37.1 | 2.237E-78 | 270 |
Flammulina velutipes | Flave_chr11AA00250 | 34.7 | 2.485E-76 | 264 |
Name | Summary | Attribution | Assay type | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Carbon metabolism | Transcriptional changes along alternative morphogenetic paths of C. cinerea | Xie et al. 2020 | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Complex carbon sources 1 (long incubation) | Expression profiling on diverse complex carbon sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Coprinopsis challenged with bacteria | Transcriptional response to Bacillus subtilis and Escherichia coli. | Kombrink et al. 2018 | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Early development 1 | Time series expression profiling of basidiospore and oidium germination | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Early development 2 | Time series expression profiling of mycelial growth, light induction and fruiting body initiation. | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Fruiting body development | RNA-Seq analysis of fruiting body development | Krizsan et al. 2019 | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Nitrogen sources (12h incubation) | Expression profiling on diverse nitrogen sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Plant biomass (12h incubation) | Expression profiling on diverse plant biomasses as carbon sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Simple and complex carbon and nitrogen sources | Expression profiling on diverse complex carbon and nitrogen sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Simple and complex carbon sources (12h incubation) | Expression profiling on diverse complex carbon sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Starvation induced by water agar transfer | Expression profiling on starvation induced by transfer to water agar | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Straw time series | Time series expression profiling on straw as a carbon source | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Stress conditions 1 | Expression profiling under various stress conditions | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Stress conditions 2 | Expression profiling under various stress conditions | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
Systematic name | - |
---|---|
Protein id | CopciAB_456276.T0 |
Description | Protein tyrosine kinase |
Analysis | Signature accession | Signature description | InterPro Accession | Start | End |
---|---|---|---|---|---|
Pfam | PF00069 | Protein kinase domain | IPR000719 | 25 | 287 |
Prediction | Start | End | Score |
---|---|---|---|
No records |
Domain n | Start | End | Length |
---|---|---|---|
No records |
Accession | Description |
---|---|
IPR000719 | Protein kinase domain |
IPR017441 | Protein kinase, ATP binding site |
IPR008271 | Serine/threonine-protein kinase, active site |
IPR011009 | Protein kinase-like domain superfamily |
Go id | Term | Ontology |
---|---|---|
GO:0004672 | protein kinase activity | MF |
GO:0005524 | ATP binding | MF |
GO:0006468 | protein phosphorylation | BP |
KEGG Orthology |
---|
No records |
COG category | Description |
---|---|
T | Protein tyrosine kinase |
Class | Family | Subfamily |
---|---|---|
No records |
Group |
---|
No records |
Arrow shows the origin of gene family containing CopciAB_456276.
Sequence id | CopciAB_456276.T0 |
---|---|
Sequence |
>CopciAB_456276.T0 MPRPVATDSLPEFAGKYFADGRFYLEEKLGSGAYGKVYRAIDRSELTSTGAPTMRAIKILLQYPLGSDKDRVQKR EFQIHRRVTGHDNIVSIHGFFRDLEFVYAVMDFCAGGDLFAAITEKHWYEDKPKRIKSTYLQILDGVQHCHNLGI YHRDIKPENILCSQNGSRIRLADFGLSTNKTFSNEFGCGSSYYMSPECIGTSRENGRHAYSTPHNDIWSLGVILT NMATGRNPWRYATVNDDCFRAFYKDNDFLLTVLPISTELNSILKSIFVLDWRERIPLPQLRQRMVELGKVFQNQT TPLQQESLPIASIQSEGPTLVETIPPAKANSRDSRQASPENKPLDDPSVANVGNADSGSPVRSKRSRQLRPQVSS DPPPSGALDPSLAPPSESSGSSCSDRSKGPKTPASAIKPANDVVEIPGEVPDLRLDNPANPIVQEEIQPFGSPGG EKAKRSLKKSNLFRTLQRFRVGQPESSNPE |
Length | 480 |
Sequence id | CopciAB_456276.T0 |
---|---|
Sequence |
>CopciAB_456276.T0 ATGCCTCGACCTGTCGCAACAGACTCCCTTCCCGAATTCGCTGGGAAATATTTCGCAGACGGTCGCTTCTACTTG GAAGAGAAGCTAGGCTCTGGAGCTTATGGCAAAGTGTATCGTGCTATCGACAGAAGCGAACTAACCTCGACGGGT GCTCCGACCATGCGGGCTATCAAGATTCTCCTACAGTACCCTCTTGGATCTGACAAAGACCGGGTCCAGAAACGA GAGTTCCAAATCCACAGGAGGGTCACCGGTCACGACAATATCGTCTCCATCCATGGCTTCTTCCGCGATCTGGAA TTCGTATACGCCGTCATGGACTTCTGTGCTGGAGGGGATCTTTTTGCCGCAATCACAGAGAAGCATTGGTACGAA GACAAGCCCAAAAGGATCAAATCGACTTACCTCCAAATATTGGATGGAGTCCAACACTGTCATAACTTGGGAATC TACCACCGGGACATCAAACCCGAAAACATCCTCTGCTCACAGAATGGTAGCCGTATCCGCTTGGCCGACTTTGGC CTTTCAACGAATAAAACCTTCTCCAACGAGTTTGGTTGCGGAAGCTCCTATTACATGAGCCCAGAATGCATAGGC ACAAGTAGGGAGAATGGTCGCCATGCTTATTCTACACCTCATAACGACATATGGTCCCTCGGGGTGATCCTAACC AATATGGCGACTGGCCGCAACCCTTGGCGGTATGCAACGGTTAACGACGACTGCTTCAGAGCCTTTTACAAGGAT AACGACTTCCTCCTCACCGTACTCCCCATTTCCACGGAATTGAACAGCATCCTCAAGTCCATATTCGTGCTCGAC TGGCGCGAGCGTATCCCGCTTCCACAACTCCGACAGCGTATGGTCGAACTGGGCAAAGTGTTCCAGAACCAAACT ACCCCCCTCCAGCAAGAAAGTTTACCTATTGCCTCCATCCAATCCGAGGGTCCGACACTCGTAGAGACTATACCT CCCGCGAAAGCAAACAGTCGAGATTCCCGCCAGGCCTCGCCTGAAAACAAACCCCTCGACGACCCTTCGGTGGCA AATGTCGGCAATGCAGACAGTGGCTCCCCAGTCCGGAGCAAGCGTTCGCGTCAGTTGCGCCCCCAGGTCTCGTCC GATCCCCCACCGTCGGGCGCGCTTGACCCGTCGCTGGCTCCGCCTTCTGAATCATCGGGATCCAGCTGTTCTGAT CGCAGCAAAGGACCGAAAACTCCTGCGTCGGCCATAAAGCCAGCCAACGACGTCGTCGAAATTCCTGGAGAAGTT CCCGACTTAAGGCTGGACAACCCGGCCAACCCAATCGTTCAGGAAGAAATACAGCCTTTTGGATCACCCGGTGGA GAGAAAGCAAAGCGCAGTTTGAAGAAAAGCAACCTCTTCCGCACATTGCAGCGCTTCAGAGTGGGGCAGCCCGAG TCCTCGAACCCAGAATAG |
Length | 1443 |
Sequence id | CopciAB_456276.T0 |
---|---|
Sequence |
>CopciAB_456276.T0 ACCAACGACCAAGTTCTCACTCTGAACTCCTTTCCATTGCTTCAGTCTGGACTACTGTCTCATGTATATGATACA GTTTATCTATTCCAATGGTTGAATTGTGTCACCTTTCGGCTCTGGCAGTGTTTCCCCCCGTATTACCTCACTCTC TGTGCCTCTCTTTATGCCTCGACCTGTCGCAACAGACTCCCTTCCCGAATTCGCTGGGAAATATTTCGCAGACGG TCGCTTCTACTTGGAAGAGAAGCTAGGCTCTGGAGCTTATGGCAAAGTGTATCGTGCTATCGACAGAAGCGAACT AACCTCGACGGGTGCTCCGACCATGCGGGCTATCAAGATTCTCCTACAGTACCCTCTTGGATCTGACAAAGACCG GGTCCAGAAACGAGAGTTCCAAATCCACAGGAGGGTCACCGGTCACGACAATATCGTCTCCATCCATGGCTTCTT CCGCGATCTGGAATTCGTATACGCCGTCATGGACTTCTGTGCTGGAGGGGATCTTTTTGCCGCAATCACAGAGAA GCATTGGTACGAAGACAAGCCCAAAAGGATCAAATCGACTTACCTCCAAATATTGGATGGAGTCCAACACTGTCA TAACTTGGGAATCTACCACCGGGACATCAAACCCGAAAACATCCTCTGCTCACAGAATGGTAGCCGTATCCGCTT GGCCGACTTTGGCCTTTCAACGAATAAAACCTTCTCCAACGAGTTTGGTTGCGGAAGCTCCTATTACATGAGCCC AGAATGCATAGGCACAAGTAGGGAGAATGGTCGCCATGCTTATTCTACACCTCATAACGACATATGGTCCCTCGG GGTGATCCTAACCAATATGGCGACTGGCCGCAACCCTTGGCGGTATGCAACGGTTAACGACGACTGCTTCAGAGC CTTTTACAAGGATAACGACTTCCTCCTCACCGTACTCCCCATTTCCACGGAATTGAACAGCATCCTCAAGTCCAT ATTCGTGCTCGACTGGCGCGAGCGTATCCCGCTTCCACAACTCCGACAGCGTATGGTCGAACTGGGCAAAGTGTT CCAGAACCAAACTACCCCCCTCCAGCAAGAAAGTTTACCTATTGCCTCCATCCAATCCGAGGGTCCGACACTCGT AGAGACTATACCTCCCGCGAAAGCAAACAGTCGAGATTCCCGCCAGGCCTCGCCTGAAAACAAACCCCTCGACGA CCCTTCGGTGGCAAATGTCGGCAATGCAGACAGTGGCTCCCCAGTCCGGAGCAAGCGTTCGCGTCAGTTGCGCCC CCAGGTCTCGTCCGATCCCCCACCGTCGGGCGCGCTTGACCCGTCGCTGGCTCCGCCTTCTGAATCATCGGGATC CAGCTGTTCTGATCGCAGCAAAGGACCGAAAACTCCTGCGTCGGCCATAAAGCCAGCCAACGACGTCGTCGAAAT TCCTGGAGAAGTTCCCGACTTAAGGCTGGACAACCCGGCCAACCCAATCGTTCAGGAAGAAATACAGCCTTTTGG ATCACCCGGTGGAGAGAAAGCAAAGCGCAGTTTGAAGAAAAGCAACCTCTTCCGCACATTGCAGCGCTTCAGAGT GGGGCAGCCCGAGTCCTCGAACCCAGAATAGTCGAGGTGGCTGCATGGGTTGTTTGGTTAAAGTAGCGAGGTTGT ACGACTTTGCGGAACCAATGTCATGTCGGGGATCTGATTGGTTGAAATGTAATGGAAGAGCGTATGATAAAGGCC TCGGCCG |
Length | 1732 |
Sequence id | CopciAB_456276.T0 |
---|---|
Sequence |
>CopciAB_456276.T0 ACCAACGACCAAGTTCTCACTCTGAACTCCTTTCCATTGCTTCAGTCTGGACTACTGTCTCATGTATATGATACA GTTTATCTATTCCAATGGTTGAATTGTGTCACCTTTCGGCTCTGGCAGTGTTTCCCCCCGTATTACCTCACTCTC TGTGCCTCTCTTTATGCCTCGACCTGTCGCAACAGACTCCCTTCCCGAATTCGCTGGGAAATATTTCGCAGACGG TCGCTTCTACTTGGAAGAGAAGCTAGGCTCTGGAGCTTATGGCAAAGTGTATCGTGCTATCGACAGAAGCGAACT AACCTCGACGGGTGCTCCGACCATGCGGGCTATCAAGATTCTCCTACAGTACCCTCTTGGATCTGACAAAGACCG GGTCCAGAAACGAGAGTTCCAAATCCACAGGAGGGTCACCGGTCACGACAATATCGTCTCCATCCATGGCTTCTT CCGCGATCTGGAATTCGTATACGCCGTCATGGACTTCTGTGCTGGAGGGGATCTTTTTGCCGCAATCACAGAGAA GCATTGGTACGAAGACAAGCCCAAAAGGATCAAATCGACTTACCTCCAAATATTGGATGGAGTCCAACACTGTCA TAACTTGGGAATCTACCACCGGGACATCAAACCCGAAAACATCCTCTGCTCACAGAATGGTAGCCGTATCCGCTT GGCCGACTTTGGCCTTTCAACGAATAAAACCTTCTCCAACGAGTTTGGTTGCGGAAGCTCCTATTACATGAGCCC AGGTGAGTAGTATGTCGGCTTTGGGTCTTACTTCGCTCGACCTTACGCTGTTAATTTTAGAATGCATAGGCACAA GTAGGGAGAATGGTCGCCATGCTTATTCTACACCTCATAACGACATATGGTCCCTCGGGGTGATCCTAACCAATA TGGCGACTGGCCGCAACCCTTGGCGGTATGCAACGGTTAACGACGACTGCTTCAGAGCCTTTTACAAGGATAACG ACTTCCTCCTCACCGTACTCCCCATTTCCACGGAATTGAACAGCATCCTCAAGTCCATATTCGTGCTCGACTGGC GCGAGCGTATCCCGCTTCCACAACTCCGACAGCGTATGGTCGAACTGGGCAAAGTGTTCCAGAACCAAACTACCC CCCTCCAGCAAGAAAGTTTACCTATTGCCTCCATCCAATCCGAGGGTCCGACACTCGTAGAGACTATACCTCCCG CGAAAGCAAACAGTCGAGATTCCCGCCAGGCCTCGCCTGAAAACAAACCCCTCGACGACCCTTCGGTGGCAAATG TCGGCAATGCAGACAGTGGCTCCCCAGTCCGGAGCAAGCGTTCGCGTCAGTTGCGCCCCCAGGTCTCGTCCGATC CCCCACCGTCGGGCGCGCTTGACCCGTCGCTGGCTCCGCCTTCTGAATCATCGGGATCCAGCTGTTCTGATCGCA GCAAAGGACCGAAAACTCCTGCGTCGGCCATAAAGCCAGCCAACGACGTCGTCGAAATTCCTGGAGAAGTTCCCG ACTTAAGGCTGGACAACCCGGCCAACCCAATCGTTCAGGAAGAAATACAGCCTTTTGGATCACCCGGTGGAGAGA AAGCAAAGCGCAGTTTGAAGAAAAGCAACCTCTTCCGCACATTGCAGCGCTTCAGAGTGGGGCAGCCCGAGTCCT CGAACCCAGAATAGTCGAGGGTGAGTAAGGAAGGTTTACTTCTCCTCGGTGCAGTAAATTAATTATCGATCCAGT GGCTGCATGGGTTGTTTGGTTAAAGTAGCGAGGTTGTACGACTTTGCGGAACCAATGTCATGTCGGGGATCTGAT TGGTTGAAATGTAATGGAAGAGCGTATGATAAAGGCCTCGGCCG |
Length | 1844 |