CopciAB_458741
Coprinopsis cinerea A43mutB43mut pab1-1 #326

General data

Systematic name CopciAB_458741 Strain Coprinopsis cinerea Okayama 7
Standard name - Synonyms 458741
Uniprot id Functional description
Location scaffold_7:1434445..1435139 Strand +
Gene length (nt) 695 Transcript length (nt) 531
CDS length (nt) 531 Protein length (aa) 176

Reciprocal best hits in model fungi

Strain name Gene / Protein name

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
0

Expression

Name Summary Attribution Assay type
Carbon metabolism Transcriptional changes along alternative morphogenetic paths of C. cinerea Xie et al. 2020 RNA-Seq
Sample Mean cpm SD cpm Se of mean
sclerotia 3.237 0.3554 0.2052
oidia 7.823 1.8134 1.0469
vegetative_mycelium 6.7622 1.1997 0.6926
primordia 7.5056 0.8234 0.4754
hyphal_knot 5.922 1.0002 0.5775
young_fruiting_body 3.5351 0.2992 0.1728
Complex carbon sources 1 (long incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control - glucose 5.2798 1.5983 0.9228
Wheat bran 18.5387 7.1271 4.1148
Horse manure 8.9147 2.2016 1.2711
Oak leaves 2.3437 0.6367 0.3676
Hay 11.6939 2.7583 1.5925
Corn stalk 9.2731 0.6863 0.3962
Pectine 7.4692 0.3957 0.2285
Microcrystalline cellulose 6.3358 1.4505 0.8374
Xylose 8.9698 2.9546 1.7058
Cellobiose 12.8451 1.0564 0.6099
Lignin 6.9676 0.5593 0.3229
Apple peels 4.4971 0.5035 0.2907
Coprinopsis challenged with bacteria Transcriptional response to Bacillus subtilis and Escherichia coli. Kombrink et al. 2018 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control 4.1227 0.6431 0.3713
Bsubtilis 3.2462 0.3423 0.1976
Ecoli 1.7854 0.2769 0.1598
Early development 1 Time series expression profiling of basidiospore and oidium germination Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
BS 0h 1.0627 0.3896 0.2249
BS 4h 2.1222 0.4281 0.2472
BS 8h 2.745 0.8215 0.4743
BS 12h 3.1249 0.8632 0.4984
Oidia 0 h 9.8948 2.2246 1.2844
Oidia 18 h 1.8253 0.5737 0.3312
Sclerotia 3.1632 2.0106 1.1608
Early development 2 Time series expression profiling of mycelial growth, light induction and fruiting body initiation. Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
DM 12h 1.343 0.2261 0.1306
DM 36h 0.8188 0.3033 0.1751
DM 60h 1.4695 0.5886 0.3398
DM 84h 2.0056 0.3284 0.1896
DM 108h 0.7977 0.2332 0.1346
DM 132h 1.6273 0.6189 0.3573
DM 156hAE 1.5116 0.381 0.22
ELI1hAE 1.5063 0.6466 0.3733
ELI2hAE 1.147 0.739 0.4266
LI2hAE 1.582 0.5339 0.3083
LI6hAE 2.6628 0.8267 0.4773
LI12hAE 2.2329 1.8802 1.0855
LI18hAE 1.6604 0.5881 0.3395
LI 24hAE 1.3277 0.4653 0.2686
DM 156hAM 1.7555 0.0483 0.0279
ELI1hAM 2.0419 0.2232 0.1288
ELI2hAM 1.8338 0.2505 0.1446
LI2hAM 1.558 0.8452 0.488
LI6hAM 1.505 0.3712 0.2143
LI12hAM 3.018 0.4479 0.2586
LI18hAM 2.6271 1.0313 0.5954
LI 24hAM 1.4234 0.5999 0.3464
LI 24hHK 2.9442 0.1752 0.1011
L/D 6h 2.8944 1.1404 0.6584
L/D 12h 2.6084 0.8381 0.4839
L/D 18h 2.5808 0.4259 0.2459
L/D 24h 2.3263 0.7921 0.4573
Fruiting body development RNA-Seq analysis of fruiting body development Krizsan et al. 2019 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Vegetative mycelium 9.3651 1.9266 1.1123
Hyphal knots 10.0694 3.4804 2.0094
Primordium 1 7.2944 1.9502 1.126
Primordium 2 9.1159 1.8369 1.0605
Young Fruiting body cap 2.9862 2.7216 1.5713
Younf fruiting body gill 7.0733 1.1638 0.6719
Young fruiting body stipe 2.8173 0.2392 0.1381
Mature fruiting body cap_gill 2.9983 0.8944 0.5164
Mature fruiting body stipe 0.6365 0.2584 0.1492
Nitrogen sources (12h incubation) Expression profiling on diverse nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Complete medium - control 5.4925 2.1026 1.214
NH4NO3 5.8151 0.2034 0.1175
Proline 4.1154 1.2158 0.7019
Tryptophan 4.7095 4.1308 2.3849
Isoleucin 2.5943 0.1529 0.0883
Arginine 2.0342 0.1823 0.1052
Metionine 4.9711 0.0556 0.0321
NaNO3 3.4482 0.3772 0.2178
Plant biomass (12h incubation) Expression profiling on diverse plant biomasses as carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 5.4925 2.1026 1.214
Citrus peel 1.5668 0.5218 0.3013
Poplar leaves 5.774 1.1637 0.6719
Typha leaves 4.2164 1.1304 0.6527
Overwintered Salix leaves 3.7331 1.1738 0.6777
Reed flowering 4.3821 3.5761 2.0646
Tigernut 1.9999 0.6806 0.3929
Energy cane 6.078 1.9143 1.1052
Guar gum 6.2042 2.4261 1.4007
Apple peels 4.2814 0.2562 0.1479
Cellobiose 3.191 0.1992 0.115
Corn stalk 6.7055 1.7244 0.9956
Horse manure 7.1401 2.267 1.3088
Lignin 2.9075 0.0517 0.0298
Microcrystalline cellulose 3.5948 1.2701 0.7333
Oak leaves 6.1016 1.0031 0.5791
Pectin esterified 7.0906 1.6664 0.9621
Poplar sawdust 8.3067 1.4025 0.8097
Wheat bran 7.7228 0.438 0.2529
Chlamydomonas reinhardtii 5.1166 1.6318 0.9421
Vertatryl alcohol 2.575 0.692 0.3995
Furfural 1.3214 0.3082 0.178
Autoclaved mycelium 3.8287 0.4486 0.259
Simple and complex carbon and nitrogen sources Expression profiling on diverse complex carbon and nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 7.5802 0.2667 0.154
Ribose 8.0994 0.6995 0.4039
Mannose 6.5899 1.5267 1.0795
Fructose 7.2636 1.295 0.7476
Arabinose 6.8329 0.8181 0.4723
Xylose 8.1457 1.9976 1.1533
Galacturonic acid 9.3953 0.9958 0.5749
Rhamnogalacturonan 7.6945 0.7418 0.4283
Pectin esterified 8.6265 0.5749 0.3319
Polygalacturonic acid 9.1451 1.6173 0.9337
Sodium acetate 8.5658 1.0008 0.5778
No nitrogen 4.1249 1.4081 0.813
BSA 7.6611 1.3895 0.8022
Glutamine 6.9566 1.2781 0.7379
No phosphate 5.4892 0.4311 0.2489
No carbon 8.5299 0.6233 0.4407
No sulphur 4.9273 1.3633 0.7871
Simple and complex carbon sources (12h incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 5.4925 2.1026 1.214
Amylose 6.8972 0.7368 0.4254
Fucose 5.8416 0.5193 0.2998
Galactose 5.7483 0.5009 0.2892
Lactose 6.0696 0.9099 0.5253
Maltose 6.5895 1.5102 0.8719
Mannitol 7.074 1.6494 0.9523
Rhamnose 6.3333 1.3937 0.8047
Sorbitol 7.4566 1.3861 0.8003
Trehalose 6.2385 0.3793 0.219
Glycerol 5.0242 1.349 0.7789
Glucuronic acid 6.2115 0.7027 0.4057
Arabinan 9.1504 2.0698 1.195
Galactan 5.2071 1.6453 0.9499
Galactomannan 7.6613 1.3349 0.7707
Glucan 5.5132 2.9648 1.7117
Xylan 6.6704 0.64 0.3695
Xyloglucan 7.8783 1.4868 0.8584
Arabinogalactan 8.5587 1.7217 0.994
Pectin 14.5809 4.1819 2.4144
Rhamnogalacturonan 14.3555 2.259 1.3042
Polygalacturonic acid 7.2897 1.9282 1.1132
Mannan 9.4835 2.7705 1.5995
Amylopectin 6.9998 2.365 1.3654
Inulin 4.5073 0.9484 0.5475
BSA 2.5494 0.6435 0.3715
Starvation induced by water agar transfer Expression profiling on starvation induced by transfer to water agar Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Control 1.4695 0.5886 0.3398
2h WAT 2.5141 0.3931 0.227
4h WAT 1.9179 0.8166 0.4715
8h WAT 2.3729 0.5893 0.3402
16h WAT 2.8297 0.7218 0.4167
24h WAT 2.4622 0.8856 0.5113
WAT hyphal knot -30h 2.0007 0.4731 0.2731
WAT hyphal knot -22h 0.9128 0.1761 0.1017
WAT hyphal knot -15h 2.0749 0.548 0.3164
WAT hyphal knot -7.5h 3.5332 0.8048 0.4647
WAT hyphal knot 2.2478 0.2748 0.1586
WAT hyphal knot +7.5h 2.1549 1.9457 1.1233
Straw time series Time series expression profiling on straw as a carbon source Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 4.0975 2.6797 1.5471
Straw 3h 1.4049 0.4819 0.2782
Straw 6h 2.7385 0.6673 0.3853
Straw 12h 4.8697 1.5435 0.8911
Straw 24h 5.6503 1.6911 0.9764
Stress conditions 1 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 1.1486 0.2983 0.1722
Frost (-20C, 30min) 1.4442 0.1468 0.0847
Heat shock (47C, 2h) 2.8216 0.3782 0.2184
High CO2 1.041 0.265 0.153
Drought (4% agar, 12h) 3.3882 1.1914 0.6878
Oxidative (1mM H2O2, 3h) 0.9289 0.0592 0.0342
Acidic (pH4, 3h) 1.2646 0.8242 0.4758
Alkaline (pH9, 3h) 1.9388 0.4779 0.2759
Osmotic (sorbitol 2h) 1.6079 0.4503 0.26
CongoRed (3h) 0.8075 0.2079 0.1201
Cobalt chloride control 1.7942 0.8735 0.5043
Cobalt chloride 2mM 1.564 0.8588 0.4958
Stress conditions 2 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 3.8413 2.6146 1.5096
Cold stimulation 2.2876 1.0486 0.6054
Scratched surface 1.4327 0.1807 0.1043
Ca2+, 200mM, 24h 1.1634 0.1465 0.0846
Cu2+, 2mM, 6h 1.3316 0.2825 0.1631
Voriconazole 1.8228 0.6684 0.3859
Trichoderma interaction, early 1.879 1.3055 0.7538
Trichoderma interaction 60h 1.2362 2.1412 1.2362
Cobalt chloride 2mM repeat 1.4515 0.8992 0.5192
Hypoxia 2.2327 1.2708 0.7337
Hypoxia control 2.8333 1.6359 0.9445
Protoplastation control 2.8818 0.2334 0.1651
Protoplastation 3.5h 2.8015 0.9461 0.669
Protoplastation 1.5h 0.6489 0.4992 0.353

General data

Systematic name -
Protein id CopciAB_458741.T0
Description

Annotation summary

0 40 80 120 160 176

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
Pfam PF20147 Crinkler effector protein N-terminal domain IPR045379 5 87

SignalP

Prediction Start End Score
No records

Transmembrane domains

Domain n Start End Length
No records

InterPro

Accession Description
IPR045379 Crinkler effector protein, N-terminal
IPR011009 Protein kinase-like domain superfamily

GO

Go id Term Ontology
No records

KEGG

KEGG Orthology
No records

EggNOG

COG category Description
No records

CAZy

Class Family Subfamily
No records

Transcription factor

Group
No records

Conservation of CopciAB_458741 across fungi.

Arrow shows the origin of gene family containing CopciAB_458741.

Protein

Sequence id CopciAB_458741.T0
Sequence >CopciAB_458741.T0
MAEIISINCPLYGEGPDKAFSVKIQANDISILKEFITTRNRLSNVNPTHVRLFKVSLTPDELHKTIPNPESELNS
PLAEISAIFNDLPENKLAQKSTYEEGWVHGDLPYCNILRSKDKQRVWVVDFDWGGRDGEVYYPTPRLNELLVEGR
NFSDWKIRKEDDERILDLTFKRLGQV
Length 176

Coding

Sequence id CopciAB_458741.T0
Sequence >CopciAB_458741.T0
ATGGCAGAGATTATCTCGATTAATTGTCCGCTTTATGGCGAGGGCCCCGACAAGGCGTTTAGTGTAAAGATCCAG
GCGAACGACATCAGCATCCTCAAAGAATTTATAACGACGCGCAACCGACTTTCGAATGTCAATCCAACGCACGTA
CGTCTCTTCAAGGTCTCCCTGACGCCAGACGAGCTACACAAAACGATTCCAAACCCAGAATCCGAGCTCAACTCA
CCGCTTGCAGAAATCTCTGCCATCTTCAATGATTTACCAGAGAACAAACTGGCTCAAAAGTCGACCTATGAAGAA
GGGTGGGTGCATGGAGACCTTCCATATTGCAACATCCTCAGGAGCAAAGACAAGCAACGGGTTTGGGTTGTTGAC
TTTGACTGGGGAGGGAGAGATGGTGAAGTCTACTATCCGACTCCAAGGCTGAATGAATTGTTGGTCGAAGGAAGG
AACTTCTCAGATTGGAAGATTCGGAAGGAGGATGATGAGAGGATTTTGGATCTGACGTTCAAGAGACTGGGTCAA
GTGTAG
Length 531

Transcript

Sequence id CopciAB_458741.T0
Sequence >CopciAB_458741.T0
ATGGCAGAGATTATCTCGATTAATTGTCCGCTTTATGGCGAGGGCCCCGACAAGGCGTTTAGTGTAAAGATCCAG
GCGAACGACATCAGCATCCTCAAAGAATTTATAACGACGCGCAACCGACTTTCGAATGTCAATCCAACGCACGTA
CGTCTCTTCAAGGTCTCCCTGACGCCAGACGAGCTACACAAAACGATTCCAAACCCAGAATCCGAGCTCAACTCA
CCGCTTGCAGAAATCTCTGCCATCTTCAATGATTTACCAGAGAACAAACTGGCTCAAAAGTCGACCTATGAAGAA
GGGTGGGTGCATGGAGACCTTCCATATTGCAACATCCTCAGGAGCAAAGACAAGCAACGGGTTTGGGTTGTTGAC
TTTGACTGGGGAGGGAGAGATGGTGAAGTCTACTATCCGACTCCAAGGCTGAATGAATTGTTGGTCGAAGGAAGG
AACTTCTCAGATTGGAAGATTCGGAAGGAGGATGATGAGAGGATTTTGGATCTGACGTTCAAGAGACTGGGTCAA
GTGTAG
Length 531

Gene

Sequence id CopciAB_458741.T0
Sequence >CopciAB_458741.T0
ATGGCAGAGATTATCTCGATTAATTGTCCGCTTTATGGCGAGGGCCCCGACAAGGCGTTTAGTGTAAAGATCCAG
GCGAACGACATCAGCATCCTCAAAGAATTTATAACGACGCGCAACCGACTTTCGAATGTCAATCCAACGCACGTA
CGTCTCTTCAAGGTCTCCCTGACGCCAGACGAGCTACACAAAACGATTCCAAACCCAGAATCCGAGCTCAACTCA
CCGCTTGCAGAAATCTCTGCCATCTTCAATGATTTACCAGAGAACAAAGTTCATGTTTTAGCAGGTAAGCAAAGG
TCACAACCGTGCTTCATATCTTCACTTGGATTGCCGCTGTCCTCCCCAGGACTGGCCTCAAACGATCTGCTCTCG
AGTCTGCGTTCCAATTCGACGCACTCAAGCGGGCCAAGGTGGTCACTGAATCCCCGTCACAGCTGGCTCAAAAGT
CGACCTATGAAGAAGGGTGGGTGCATGGAGACCTTCCATATTGCAACATCCTCAGGAGCAAAGACAAGCAACGGG
TTTGGGTTGTTGACTTTGACTGGGGAGGGAGAGATGGTGAAGTCTACTATCCGACTCCAAGGCTGAATGAATTGT
TGGTCGAAGGAAGGAACTTCTCAGATTGGAAGATTCGGAAGGAGGATGATGAGAGGATTTTGGATCTGACGTTCA
AGAGACTGGGTCAAGTGTAG
Length 695