CopciAB_461290
Coprinopsis cinerea A43mutB43mut pab1-1 #326

General data

Systematic name CopciAB_461290 Strain Coprinopsis cinerea Okayama 7
Standard name - Synonyms 461290
Uniprot id Functional description Protein of unknown function (DUF3591)
Location scaffold_1:1736973..1740923 Strand -
Gene length (nt) 3951 Transcript length (nt) 3223
CDS length (nt) 3090 Protein length (aa) 1029

Reciprocal best hits in model fungi

Strain name Gene / Protein name
Neurospora crassa hat-2
Saccharomyces cerevisiae YGR274C_TAF1
Schizosaccharomyces pombe SPAC2G11.14

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
Hypsizygus marmoreus strain 51987-8 Hypma_RDB29477 77.6 0 1660
Agrocybe aegerita Agrae_CAA7265965 75.5 0 1620
Pleurotus eryngii ATCC 90797 Pleery1_1516681 74.5 0 1598
Lentinula edodes W1-26 v1.0 Lentinedodes1_819 72.9 0 1540
Lentinula edodes NBRC 111202 Lenedo1_1125271 72.9 0 1538
Flammulina velutipes Flave_chr08AA00623 70.9 0 1518
Ganoderma sp. 10597 SS1 v1.0 Gansp1_114127 69.8 0 1517
Lentinula edodes B17 Lened_B_1_1_18304 72 0 1513
Schizophyllum commune H4-8 Schco3_2610400 68.6 0 1430
Grifola frondosa Grifr_OBZ79847 66 0 1378
Auricularia subglabra Aurde3_1_1202504 60 0 1294
Agaricus bisporus var. burnettii JB137-S8 Agabi_varbur_1_67440 68.7 1.603E-285 899
Agaricus bisporus var bisporus (H97) Agabi_varbisH97_2_182039 71.1 6.476E-276 871
Pleurotus ostreatus PC9 PleosPC9_1_96116 72.5 7.88E-275 868
Pleurotus ostreatus PC15 PleosPC15_2_1075232 71.8 2.525E-269 852

Expression

Name Summary Attribution Assay type
Carbon metabolism Transcriptional changes along alternative morphogenetic paths of C. cinerea Xie et al. 2020 RNA-Seq
Sample Mean cpm SD cpm Se of mean
sclerotia 118.7587 7.2911 4.2095
oidia 92.4133 4.4593 2.5746
vegetative_mycelium 89.7372 9.3034 5.3713
primordia 98.7995 4.2958 2.4802
hyphal_knot 108.8892 12.8861 7.4398
young_fruiting_body 61.601 5.6867 3.2832
Complex carbon sources 1 (long incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control - glucose 125.1917 5.7477 3.3184
Wheat bran 59.4696 5.3248 3.0743
Horse manure 89.79 10.7512 6.2072
Oak leaves 74.3062 20.3716 11.7616
Hay 74.9359 7.4518 4.3023
Corn stalk 79.6597 8.0289 4.6355
Pectine 94.8456 5.4271 3.1334
Microcrystalline cellulose 132.5403 8.8141 5.0888
Xylose 101.8026 8.7637 5.0597
Cellobiose 110.7722 7.6603 4.4227
Lignin 127.9103 9.3029 5.3711
Apple peels 101.828 8.1575 4.7097
Coprinopsis challenged with bacteria Transcriptional response to Bacillus subtilis and Escherichia coli. Kombrink et al. 2018 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control 76.4214 2.8102 1.6225
Bsubtilis 86.0304 0.562 0.3245
Ecoli 96.0559 6.3069 3.6413
Early development 1 Time series expression profiling of basidiospore and oidium germination Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
BS 0h 70.9505 3.796 2.1916
BS 4h 39.0379 3.1196 1.8011
BS 8h 25.67 1.8516 1.069
BS 12h 20.0539 3.0663 1.7703
Oidia 0 h 34.5232 5.7661 3.329
Oidia 18 h 26.8592 2.7889 1.6102
Sclerotia 26.9133 3.0468 1.7591
Early development 2 Time series expression profiling of mycelial growth, light induction and fruiting body initiation. Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
DM 12h 14.0837 0.7915 0.457
DM 36h 19.1961 0.8906 0.5142
DM 60h 19.3872 2.1691 1.2523
DM 84h 14.8589 4.1391 2.3897
DM 108h 17.0428 1.2155 0.7018
DM 132h 19.9186 0.2609 0.1506
DM 156hAE 18.0863 2.1697 1.2527
ELI1hAE 19.529 1.5959 0.9214
ELI2hAE 20.9192 1.1163 0.6445
LI2hAE 19.5929 3.2413 1.8714
LI6hAE 20.0247 1.6042 0.9262
LI12hAE 17.9707 3.3319 1.9237
LI18hAE 22.2844 2.9384 1.6965
LI 24hAE 24.9063 4.1439 2.3925
DM 156hAM 17.0305 0.1705 0.0985
ELI1hAM 17.9771 1.0034 0.5793
ELI2hAM 17.312 3.2754 1.891
LI2hAM 15.8866 1.2461 0.7195
LI6hAM 19.5535 3.5422 2.0451
LI12hAM 15.7722 0.3743 0.2161
LI18hAM 18.9167 2.2078 1.2746
LI 24hAM 20.4392 5.8011 3.3493
LI 24hHK 23.6232 0.9506 0.5489
L/D 6h 27.6817 3.0188 1.7429
L/D 12h 32.2404 3.6212 2.0907
L/D 18h 38.3917 5.2261 3.0173
L/D 24h 36.5151 4.9222 2.8419
Fruiting body development RNA-Seq analysis of fruiting body development Krizsan et al. 2019 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Vegetative mycelium 53.2756 3.027 1.7476
Hyphal knots 72.5065 4.492 2.5935
Primordium 1 75.1275 5.4952 3.1726
Primordium 2 62.6235 6.9804 4.0301
Young Fruiting body cap 53.9741 2.9609 1.7095
Younf fruiting body gill 51.2331 4.4907 2.5927
Young fruiting body stipe 77.2237 6.4411 3.7188
Mature fruiting body cap_gill 42.728 7.121 4.1113
Mature fruiting body stipe 38.1296 2.8437 1.6418
Nitrogen sources (12h incubation) Expression profiling on diverse nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Complete medium - control 91.4605 13.2291 7.6378
NH4NO3 64.7594 4.4302 2.5578
Proline 75.9444 1.4572 0.8413
Tryptophan 69.3482 23.9402 13.8219
Isoleucin 84.4898 1.5659 0.9041
Arginine 76.8066 1.484 0.8568
Metionine 67.2124 1.6937 0.9778
NaNO3 75.4666 1.0236 0.591
Plant biomass (12h incubation) Expression profiling on diverse plant biomasses as carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 91.4605 13.2291 7.6378
Citrus peel 81.8883 13.2271 7.6367
Poplar leaves 68.5686 4.034 2.329
Typha leaves 68.8919 8.3248 4.8063
Overwintered Salix leaves 69.7231 9.7469 5.6274
Reed flowering 85.3524 23.4367 13.5312
Tigernut 68.2615 3.8241 2.2078
Energy cane 63.1167 2.2665 1.3086
Guar gum 64.9284 10.723 6.1909
Apple peels 60.2547 6.7923 3.9215
Cellobiose 62.5216 1.9857 1.1464
Corn stalk 56.3289 8.6774 5.0099
Horse manure 58.0796 2.5279 1.4595
Lignin 76.3392 30.2973 17.4922
Microcrystalline cellulose 69.2387 5.9741 3.4491
Oak leaves 58.8546 7.3282 4.2309
Pectin esterified 56.173 3.6814 2.1255
Poplar sawdust 58.7969 4.3114 2.4892
Wheat bran 61.9518 2.3763 1.372
Chlamydomonas reinhardtii 67.8488 6.5801 3.799
Vertatryl alcohol 80.5481 3.3238 1.919
Furfural 85.3159 7.4884 4.3234
Autoclaved mycelium 80.5514 15.0007 8.6606
Simple and complex carbon and nitrogen sources Expression profiling on diverse complex carbon and nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 79.8178 2.7263 1.574
Ribose 77.4264 2.2378 1.292
Mannose 74.7971 6.0586 4.2841
Fructose 82.2741 1.9271 1.1126
Arabinose 81.0764 10.8848 6.2843
Xylose 76.4088 6.5841 3.8013
Galacturonic acid 81.0649 11.879 6.8584
Rhamnogalacturonan 87.7312 7.6713 4.429
Pectin esterified 82.5856 2.6173 1.5111
Polygalacturonic acid 82.2708 4.3925 2.536
Sodium acetate 77.1377 6.1541 3.5531
No nitrogen 88.1211 1.7691 1.0214
BSA 90.0431 4.0293 2.3263
Glutamine 84.8088 7.3549 4.2463
No phosphate 79.725 7.107 4.1032
No carbon 93.156 0.3476 0.2458
No sulphur 89.9842 14.0068 8.0868
Simple and complex carbon sources (12h incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 91.4605 13.2291 7.6378
Amylose 56.3378 2.7647 1.5962
Fucose 60.6342 3.5941 2.0751
Galactose 64.005 1.1757 0.6788
Lactose 68.916 2.2911 1.3228
Maltose 68.1992 7.0216 4.0539
Mannitol 77.5707 6.7925 3.9216
Rhamnose 72.2269 7.3601 4.2493
Sorbitol 57.5264 5.6946 3.2878
Trehalose 54.4156 2.0114 1.1613
Glycerol 65.1974 5.2162 3.0115
Glucuronic acid 58.6316 2.5564 1.4759
Arabinan 55.2597 1.9197 1.1084
Galactan 65.5146 7.8433 4.5283
Galactomannan 67.648 2.2629 1.3065
Glucan 76.6552 10.0772 5.8181
Xylan 60.3237 3.346 1.9318
Xyloglucan 53.1593 3.079 1.7777
Arabinogalactan 63.8723 7.1795 4.1451
Pectin 67.7792 8.1963 4.7322
Rhamnogalacturonan 83.3543 9.0035 5.1982
Polygalacturonic acid 73.9032 3.6665 2.1168
Mannan 61.3423 6.2981 3.6362
Amylopectin 59.3219 8.3427 4.8166
Inulin 59.5352 7.0156 4.0504
BSA 109.6395 8.621 4.9774
Starvation induced by water agar transfer Expression profiling on starvation induced by transfer to water agar Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Control 19.3872 2.1691 1.2523
2h WAT 13.892 4.5484 2.626
4h WAT 14.4168 1.7948 1.0362
8h WAT 14.9596 1.6724 0.9656
16h WAT 13.3091 3.5225 2.0337
24h WAT 14.9081 3.9461 2.2783
WAT hyphal knot -30h 17.7011 2.806 1.62
WAT hyphal knot -22h 15.5956 3.9466 2.2785
WAT hyphal knot -15h 18.1582 4.3231 2.4959
WAT hyphal knot -7.5h 17.1496 3.2827 1.8952
WAT hyphal knot 16.5939 1.823 1.0525
WAT hyphal knot +7.5h 17.733 1.2066 0.6966
Straw time series Time series expression profiling on straw as a carbon source Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 58.81 12.6141 7.2828
Straw 3h 61.1818 3.2717 1.8889
Straw 6h 53.7936 2.1963 1.268
Straw 12h 61.4933 0.8999 0.5195
Straw 24h 53.8614 8.1606 4.7115
Stress conditions 1 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 15.4205 1.7786 1.0269
Frost (-20C, 30min) 15.9471 1.4812 0.8552
Heat shock (47C, 2h) 20.9515 0.6792 0.3922
High CO2 16.6464 3.4365 1.9841
Drought (4% agar, 12h) 16.5182 5.0914 2.9395
Oxidative (1mM H2O2, 3h) 14.3647 1.0519 0.6073
Acidic (pH4, 3h) 12.1628 2.8409 1.6402
Alkaline (pH9, 3h) 16.3276 1.7782 1.0266
Osmotic (sorbitol 2h) 22.6781 2.247 1.2973
CongoRed (3h) 19.3535 2.0596 1.1891
Cobalt chloride control 19.2598 0.7658 0.4421
Cobalt chloride 2mM 22.0882 2.4972 1.4418
Stress conditions 2 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 21.0509 12.4868 7.2093
Cold stimulation 11.2067 6.2819 3.6268
Scratched surface 19.0411 1.0093 0.5827
Ca2+, 200mM, 24h 16.8242 2.7047 1.5616
Cu2+, 2mM, 6h 20.3772 10.0009 5.774
Voriconazole 17.7349 2.6891 1.5526
Trichoderma interaction, early 14.6986 1.0275 0.5932
Trichoderma interaction 60h 18.0347 2.7422 1.5832
Cobalt chloride 2mM repeat 22.2534 6.2498 3.6083
Hypoxia 18.7049 1.7254 0.9962
Hypoxia control 13.2739 1.4586 0.8421
Protoplastation control 14.3332 2.9042 2.0536
Protoplastation 3.5h 23.2851 11.8197 8.3578
Protoplastation 1.5h 12.0689 9.2845 6.5651

General data

Systematic name -
Protein id CopciAB_461290.T0
Description Protein of unknown function (DUF3591)

Annotation summary

0 300 600 900 1029

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
Pfam PF12157 Protein of unknown function (DUF3591) IPR022591 313 767

SignalP

Prediction Start End Score
No records

Transmembrane domains

Domain n Start End Length
No records

InterPro

Accession Description
IPR022591 Transcription initiation factor TFIID subunit 1, histone acetyltransferase domain
IPR040240 Transcription initiation factor TFIID subunit 1

GO

Go id Term Ontology
GO:0001091 RNA polymerase II general transcription initiation factor binding MF
GO:0004402 histone acetyltransferase activity MF
GO:0005669 transcription factor TFIID complex CC
GO:0006366 transcription by RNA polymerase II BP
GO:0017025 TBP-class protein binding MF

KEGG

KEGG Orthology
K03125

EggNOG

COG category Description
J Protein of unknown function (DUF3591)

CAZy

Class Family Subfamily
No records

Transcription factor

Group
No records

Conservation of CopciAB_461290 across fungi.

Arrow shows the origin of gene family containing CopciAB_461290.

Protein

Sequence id CopciAB_461290.T0
Sequence >CopciAB_461290.T0
MATEDETISALTGFSLSHVLEGLQLPTSDGLRNQLGITGIPELTSKQIYNDKWDDDEAVGPDQGEDWEAEIDREM
QEEEEEEESRVKEEVRSPQLKKKERRVRVVKRLVERPPTVEERFPTFAKGKVLDFTELFKGYTVKKSRLSKRPYQ
VETVYPRKRDVPRSFLESVVGDARSNANKRVEEVVAAGNVELDLRRALEERDKTDVPVSLPLDDRTFDLVLLSNW
EDEIMYGPGDVQELPTTTEPESTLTTPVNAALESGAWTQSIIWSPRAPFRDFTQLELHEEELVPEDKPSETVRPR
KRLRTDPNAKDKYNLSNDQYYEVSKEGARQHVRQTFGQLVVEHAYPAQKLQLPFYKTRLSKQEARSFHRPALQIP
ANIEIRFQKVRTAKKKKDKHGRRLGKGGSAGDALRKTADLSLRDTSNFVLWEYSEEHPPIISNFGMGSALVNYYR
KKDEKDEYVPKADLGIPFVLEPQDESPFMKFGYVYPGQTFPVLYNNLVRAPLFRHKPESTDFLVIRNTVKGESKY
YIREIKNLFVIGQTYPVTEVPGPHSRKITNTIKHRLQIIAFKLLKKSQGERLKISRLMKYFPDQNELQMRQRLKE
FMEYHRRGPHQGFWRLKSTWTLPSDAEMLKMVGPEQVVLTESMQVGQRHLQDAGYSQAEVSDGDESKLSVEQQLA
PWITTKNFLYATQAKAMLRLHGEGDPSGRGEAFSFIRISMKDIFVKAGEDYEQKLAEAESRPKSAHRYNVAEQQQ
IYKSEIERIWKAQYDSLSRTDKPELTEEDERRDKQMTAALEAGPSARPSPAFSRASSIDREREGSVGPDGAKRIL
RIKRLIDGEWRTEIIRDPAVIRAYVRGRQALEEEATLADHLAPTGDADKDKRAKKRLEEEIARMKKNQERRLHRK
NAKIVKEGGVPMQLSRPMKPDTTRRCGHCGQMGHMKTNRKCPRWAEFNSGTAPPPLTPSSSATSPPPGSAPIPIP
GTAGFNRSSGSFSFQTAVPSPLATSPPMSAMDDDYAPSTPSGSAPKLKLTLKRN
Length 1029

Coding

Sequence id CopciAB_461290.T0
Sequence >CopciAB_461290.T0
ATGGCAACCGAAGACGAAACCATCTCTGCCCTCACTGGATTCTCGTTGAGCCATGTTCTCGAAGGACTTCAACTG
CCAACTTCAGATGGTCTTCGAAATCAACTTGGAATAACCGGTATTCCTGAACTCACTTCGAAGCAAATCTACAAC
GACAAGTGGGATGATGACGAAGCCGTGGGACCTGACCAGGGAGAGGACTGGGAGGCGGAAATAGACAGGGAGATG
CAGGAAGAGGAGGAAGAGGAGGAATCGAGAGTAAAAGAAGAGGTCCGGTCACCTCAGCTCAAGAAGAAGGAACGG
CGGGTGCGTGTGGTGAAGAGACTCGTGGAGCGACCTCCGACAGTTGAGGAAAGATTCCCGACTTTTGCGAAGGGA
AAGGTTCTCGACTTCACCGAACTATTCAAGGGATACACCGTCAAGAAGTCTCGTCTATCGAAACGACCATACCAA
GTGGAGACAGTATATCCTCGCAAGCGTGATGTTCCACGGTCGTTTCTGGAGTCGGTAGTGGGCGATGCTCGAAGT
AATGCCAACAAACGTGTTGAAGAGGTGGTGGCAGCGGGGAATGTTGAATTGGATCTTCGAAGGGCTTTGGAGGAA
CGCGACAAAACGGACGTCCCAGTATCGTTGCCTCTCGATGATAGAACGTTTGACCTCGTCCTCCTTTCCAATTGG
GAAGATGAAATCATGTATGGGCCTGGCGATGTACAGGAACTTCCGACCACGACCGAGCCTGAAAGTACTTTGACT
ACGCCCGTGAATGCTGCCCTGGAATCCGGAGCCTGGACGCAAAGTATCATCTGGAGTCCGCGCGCACCTTTCCGC
GACTTCACTCAGTTGGAGCTTCACGAAGAAGAACTTGTGCCTGAGGACAAACCGAGTGAGACTGTTCGACCAAGG
AAACGTTTGCGGACGGATCCCAATGCCAAAGACAAGTACAATCTATCCAACGACCAATACTACGAGGTGTCGAAA
GAAGGCGCTCGTCAGCATGTTCGACAAACCTTTGGCCAACTCGTTGTGGAGCATGCATACCCAGCGCAGAAACTG
CAATTGCCCTTCTACAAGACACGGTTATCGAAGCAAGAAGCTCGTTCATTTCATCGGCCTGCCCTACAGATCCCT
GCAAATATCGAAATCCGTTTCCAGAAAGTCCGAACTGCAAAGAAAAAGAAGGACAAGCATGGTCGCCGTCTGGGC
AAAGGCGGGAGTGCCGGCGATGCTTTGCGCAAGACAGCGGATCTCAGCTTGCGAGATACAAGCAACTTTGTACTC
TGGGAGTATTCTGAGGAACATCCCCCCATAATCTCCAACTTCGGCATGGGTAGCGCCCTGGTCAATTACTATCGC
AAGAAGGACGAGAAAGACGAATATGTTCCCAAGGCGGACCTCGGAATTCCCTTTGTGCTAGAACCGCAGGACGAA
TCTCCTTTCATGAAGTTTGGTTACGTCTATCCGGGACAAACCTTTCCTGTCCTGTATAATAACCTTGTTCGAGCA
CCGTTGTTTCGTCACAAGCCAGAAAGTACGGATTTCTTGGTGATCAGAAACACCGTCAAAGGGGAATCGAAATAC
TACATCCGCGAAATCAAGAATTTGTTCGTCATCGGACAGACTTACCCTGTGACGGAGGTCCCAGGTCCCCATTCG
CGTAAAATCACGAACACCATCAAACATCGACTGCAAATCATTGCCTTCAAACTATTGAAGAAGAGTCAAGGAGAG
CGTCTCAAGATTTCCCGGTTAATGAAGTATTTCCCTGATCAGAATGAGCTGCAGATGCGCCAGCGCCTAAAGGAA
TTCATGGAGTACCACCGCCGAGGCCCACATCAAGGTTTCTGGAGGTTGAAGTCCACCTGGACACTACCATCAGAC
GCAGAGATGTTGAAAATGGTTGGCCCCGAACAAGTGGTGCTCACGGAAAGTATGCAGGTTGGGCAGCGACATCTC
CAAGATGCTGGCTACAGCCAAGCAGAGGTGTCCGATGGAGACGAATCAAAGCTGTCAGTTGAACAACAGCTGGCG
CCCTGGATCACGACCAAGAACTTCCTGTATGCCACGCAGGCCAAGGCCATGTTGCGGCTACACGGAGAAGGCGAT
CCTTCTGGCCGCGGTGAAGCTTTCAGTTTCATCCGAATCTCGATGAAGGACATTTTCGTCAAGGCTGGCGAAGAC
TACGAACAGAAGCTGGCTGAGGCCGAAAGCCGACCGAAATCTGCACATCGCTATAACGTTGCTGAGCAACAGCAG
ATATACAAGTCGGAAATAGAACGAATCTGGAAGGCTCAATACGACTCGTTAAGCAGAACCGACAAGCCTGAGCTG
ACTGAGGAAGATGAAAGGCGGGACAAGCAAATGACCGCTGCCCTTGAAGCAGGACCTTCTGCTCGCCCCTCCCCG
GCCTTCAGTCGAGCGTCGTCTATCGACAGAGAACGTGAGGGCAGCGTTGGACCAGACGGAGCCAAGCGTATCCTC
CGGATCAAACGCTTGATTGACGGTGAATGGCGAACGGAAATTATCCGCGACCCCGCCGTCATTCGAGCTTATGTT
CGTGGAAGACAAGCGCTCGAAGAGGAAGCTACTCTAGCAGACCATCTCGCTCCAACAGGTGATGCAGACAAGGAC
AAGAGAGCCAAGAAGAGGCTCGAAGAGGAAATCGCCCGAATGAAGAAAAACCAAGAGCGGCGACTACACAGGAAG
AATGCCAAGATCGTCAAAGAAGGTGGTGTTCCGATGCAACTCAGCAGGCCCATGAAGCCGGACACCACGCGACGA
TGCGGTCATTGTGGGCAGATGGGTCATATGAAAACAAATCGCAAATGTCCTCGTTGGGCAGAGTTCAACAGCGGG
ACGGCACCGCCTCCTCTGACGCCCTCCAGCTCTGCAACAAGTCCACCGCCTGGGAGCGCTCCAATACCAATTCCA
GGGACAGCTGGTTTCAACCGAAGCAGTGGGAGCTTCAGTTTCCAGACAGCAGTCCCCTCCCCTCTGGCAACCAGT
CCCCCTATGTCCGCCATGGACGACGACTACGCACCTTCAACGCCGTCTGGTTCCGCTCCAAAGTTGAAGCTGACT
CTGAAACGAAACTAG
Length 3090

Transcript

Sequence id CopciAB_461290.T0
Sequence >CopciAB_461290.T0
GCACTCGAACGTCCAGCTCGGTGGACTACCCACAACTGTGAGAACCTGCTGTACCAATGGCAACCGAAGACGAAA
CCATCTCTGCCCTCACTGGATTCTCGTTGAGCCATGTTCTCGAAGGACTTCAACTGCCAACTTCAGATGGTCTTC
GAAATCAACTTGGAATAACCGGTATTCCTGAACTCACTTCGAAGCAAATCTACAACGACAAGTGGGATGATGACG
AAGCCGTGGGACCTGACCAGGGAGAGGACTGGGAGGCGGAAATAGACAGGGAGATGCAGGAAGAGGAGGAAGAGG
AGGAATCGAGAGTAAAAGAAGAGGTCCGGTCACCTCAGCTCAAGAAGAAGGAACGGCGGGTGCGTGTGGTGAAGA
GACTCGTGGAGCGACCTCCGACAGTTGAGGAAAGATTCCCGACTTTTGCGAAGGGAAAGGTTCTCGACTTCACCG
AACTATTCAAGGGATACACCGTCAAGAAGTCTCGTCTATCGAAACGACCATACCAAGTGGAGACAGTATATCCTC
GCAAGCGTGATGTTCCACGGTCGTTTCTGGAGTCGGTAGTGGGCGATGCTCGAAGTAATGCCAACAAACGTGTTG
AAGAGGTGGTGGCAGCGGGGAATGTTGAATTGGATCTTCGAAGGGCTTTGGAGGAACGCGACAAAACGGACGTCC
CAGTATCGTTGCCTCTCGATGATAGAACGTTTGACCTCGTCCTCCTTTCCAATTGGGAAGATGAAATCATGTATG
GGCCTGGCGATGTACAGGAACTTCCGACCACGACCGAGCCTGAAAGTACTTTGACTACGCCCGTGAATGCTGCCC
TGGAATCCGGAGCCTGGACGCAAAGTATCATCTGGAGTCCGCGCGCACCTTTCCGCGACTTCACTCAGTTGGAGC
TTCACGAAGAAGAACTTGTGCCTGAGGACAAACCGAGTGAGACTGTTCGACCAAGGAAACGTTTGCGGACGGATC
CCAATGCCAAAGACAAGTACAATCTATCCAACGACCAATACTACGAGGTGTCGAAAGAAGGCGCTCGTCAGCATG
TTCGACAAACCTTTGGCCAACTCGTTGTGGAGCATGCATACCCAGCGCAGAAACTGCAATTGCCCTTCTACAAGA
CACGGTTATCGAAGCAAGAAGCTCGTTCATTTCATCGGCCTGCCCTACAGATCCCTGCAAATATCGAAATCCGTT
TCCAGAAAGTCCGAACTGCAAAGAAAAAGAAGGACAAGCATGGTCGCCGTCTGGGCAAAGGCGGGAGTGCCGGCG
ATGCTTTGCGCAAGACAGCGGATCTCAGCTTGCGAGATACAAGCAACTTTGTACTCTGGGAGTATTCTGAGGAAC
ATCCCCCCATAATCTCCAACTTCGGCATGGGTAGCGCCCTGGTCAATTACTATCGCAAGAAGGACGAGAAAGACG
AATATGTTCCCAAGGCGGACCTCGGAATTCCCTTTGTGCTAGAACCGCAGGACGAATCTCCTTTCATGAAGTTTG
GTTACGTCTATCCGGGACAAACCTTTCCTGTCCTGTATAATAACCTTGTTCGAGCACCGTTGTTTCGTCACAAGC
CAGAAAGTACGGATTTCTTGGTGATCAGAAACACCGTCAAAGGGGAATCGAAATACTACATCCGCGAAATCAAGA
ATTTGTTCGTCATCGGACAGACTTACCCTGTGACGGAGGTCCCAGGTCCCCATTCGCGTAAAATCACGAACACCA
TCAAACATCGACTGCAAATCATTGCCTTCAAACTATTGAAGAAGAGTCAAGGAGAGCGTCTCAAGATTTCCCGGT
TAATGAAGTATTTCCCTGATCAGAATGAGCTGCAGATGCGCCAGCGCCTAAAGGAATTCATGGAGTACCACCGCC
GAGGCCCACATCAAGGTTTCTGGAGGTTGAAGTCCACCTGGACACTACCATCAGACGCAGAGATGTTGAAAATGG
TTGGCCCCGAACAAGTGGTGCTCACGGAAAGTATGCAGGTTGGGCAGCGACATCTCCAAGATGCTGGCTACAGCC
AAGCAGAGGTGTCCGATGGAGACGAATCAAAGCTGTCAGTTGAACAACAGCTGGCGCCCTGGATCACGACCAAGA
ACTTCCTGTATGCCACGCAGGCCAAGGCCATGTTGCGGCTACACGGAGAAGGCGATCCTTCTGGCCGCGGTGAAG
CTTTCAGTTTCATCCGAATCTCGATGAAGGACATTTTCGTCAAGGCTGGCGAAGACTACGAACAGAAGCTGGCTG
AGGCCGAAAGCCGACCGAAATCTGCACATCGCTATAACGTTGCTGAGCAACAGCAGATATACAAGTCGGAAATAG
AACGAATCTGGAAGGCTCAATACGACTCGTTAAGCAGAACCGACAAGCCTGAGCTGACTGAGGAAGATGAAAGGC
GGGACAAGCAAATGACCGCTGCCCTTGAAGCAGGACCTTCTGCTCGCCCCTCCCCGGCCTTCAGTCGAGCGTCGT
CTATCGACAGAGAACGTGAGGGCAGCGTTGGACCAGACGGAGCCAAGCGTATCCTCCGGATCAAACGCTTGATTG
ACGGTGAATGGCGAACGGAAATTATCCGCGACCCCGCCGTCATTCGAGCTTATGTTCGTGGAAGACAAGCGCTCG
AAGAGGAAGCTACTCTAGCAGACCATCTCGCTCCAACAGGTGATGCAGACAAGGACAAGAGAGCCAAGAAGAGGC
TCGAAGAGGAAATCGCCCGAATGAAGAAAAACCAAGAGCGGCGACTACACAGGAAGAATGCCAAGATCGTCAAAG
AAGGTGGTGTTCCGATGCAACTCAGCAGGCCCATGAAGCCGGACACCACGCGACGATGCGGTCATTGTGGGCAGA
TGGGTCATATGAAAACAAATCGCAAATGTCCTCGTTGGGCAGAGTTCAACAGCGGGACGGCACCGCCTCCTCTGA
CGCCCTCCAGCTCTGCAACAAGTCCACCGCCTGGGAGCGCTCCAATACCAATTCCAGGGACAGCTGGTTTCAACC
GAAGCAGTGGGAGCTTCAGTTTCCAGACAGCAGTCCCCTCCCCTCTGGCAACCAGTCCCCCTATGTCCGCCATGG
ACGACGACTACGCACCTTCAACGCCGTCTGGTTCCGCTCCAAAGTTGAAGCTGACTCTGAAACGAAACTAGATGC
TTCCTTACTCTCTATTGCATTCGTTCACTGTACAATAGTTTACATACAACATTTATCTTTAGGGTTCCTTGGG
Length 3223

Gene

Sequence id CopciAB_461290.T0
Sequence >CopciAB_461290.T0
GCACTCGAACGTCCAGCTCGGTGGACTACCCACAACTGTGAGAACCTGCTGTACCAATGGCAACCGAAGACGAAA
CCATCTCTGCCCTCACTGGATTCTCGTTGAGCCATGTTCTCGAAGGACTTCAACTGCCAACTTCAGATGGTCTTC
GAAATCAACTTGGAATAACCGGTATTCCTGAACTCACTTCGAAGCAAATCTACAACGACAAGTGGGATGATGACG
AAGCCGTGGGACCTGACCAGGGAGAGGACTGGGAGGCGGAAATAGACAGGGAGATGCAGGAAGAGGAGGAAGAGG
AGGAATCGAGAGTAAAAGAAGAGGTCCGGTCACCTCAGCTCAAGAAGAAGGAACGGCGGGTGCGTGTGGTGAAGA
GACTCGTGGAGCGACCTCCGACAGTTGAGGAAAGATTCCCGACTTTTGCGAAGGGAAAGGTTCTCGACTTCACCG
AACTATTCAAGGGATACACCGTCAAGAAGTCTCGTCTATCGAAACGACCATACCAAGGTGCGTCTGTTTCGAACT
ACCGTTTTGACTCGTCTTTGTGGCTTATATATATATCAATTCTAGTGGAGACAGTATATCCTCGCAAGCGTGATG
TTCCACGGTCGTTTCTGGAGTCGGTAGTGGGCGATGCTCGAAGTAATGCCAACAAACGTGTTGAAGAGGTGGTGG
CAGCGGGGAATGTTGAATTGGATCTTCGAAGGGCTTTGGAGGTCAGTGGAACAACTGCATGTGTCGGATCCCTCT
AAACTGAATGCAGGAACGCGACAAAACGGACGTCCCAGTATCGTTGCCTCTCGATGATAGAACGTTTGACCTCGT
CCTCCTTTCCAATTGGGAAGATGAAATCATGTATGGGCCTGGCGATGTACAGGAACTTCCGACCACGACCGAGCC
TGAAAGTACTTTGACTACGCCCGTGAATGCTGCCCTGGAATCCGGAGCCTGGACGCAAAGTATCATCTGGAGTCC
GCGCGCACCTTTCCGCGACTTCACTCAGTTGGAGCTTCACGAAGAAGAACTTGTGCCTGAGGACAAACCGAGTAA
GCAACACCACGTTAATGTAACTATGGTACACGCTAAAGTACTCTCAGGTGAGACTGTTCGACCAAGGAAACGTTT
GCGGACGGATCCCAATGCCAAAGACAAGTACAATCTATCCAACGACCAATACTACGAGGTGTCGAAAGAAGGCGC
TCGTCAGCATGTTCGACAAACCTTTGGCCAACTCGTTGTGGAGCATGCATACCCAGCGCAGAAACTGCAATTGCC
CTTCGTATGTTTTCCGCTTGGCCACTTTGGGCGTGTTTCCGCTGACGCTCTATTTCAGTACAAGACACGGTTATC
GAAGCAAGAAGCTCGTTCATTTCATCGGCCTGCCCTACAGATCCCTGCAAATATCGAAATCCGTTTCCAGAAAGT
CCGAACTGCAAAGAAAAAGAAGGACAAGCATGGTCGCCGTCTGGGCAAAGGCGGGAGTGCCGGCGATGCTTTGCG
CAAGACAGCGGATCTCAGCTTGCGAGATACAAGCAACTTTGTACTCTGGGAGTATTCTGTACGTGTAAGAGCAGT
TGTATGTTTCCAAACACTAACACTGCCATTCAGGAGGAACATCCCCCCATAATCTCCAACTTCGGCATGGGTAGC
GCCCTGGTCAATTACTATCGCAAGAAGGACGAGAAAGACGAATATGTTCCCAAGGTACGTGTCTGCCCTCTGCTT
GGGAGATTGCTCTAATGATTACCAGGCGGACCTCGGAATTCCCTTTGTGCTAGAACCGCAGGACGAATCTCCTTT
CATGAAGTTTGGTTACGTCTATCCGGGACAAACCTTTCCTGTCCTGTATAATAACCTTGTTCGAGCACCGTTGTT
TCGTCACAAGCCAGAAAGTACGGATTTCTTGGTGATCAGGTCCGTACGACATTCAGATACGTTCCGCCTTCACTT
ACTGATCCTTTTCCAGAAACACCGTCAAAGGGGAATCGAAATACTACATCCGCGAAATCAAGAATTTGTTCGTCA
TCGGACAGACTTACCCTGTGACGGAGGTCCCAGGTCCCCATTCGCGTAAAATCACGAACACCATCAAACATCGAC
TGCAAATCATTGCCTTCAAACTATTGAAGAAGAGTCAAGGAGAGCGTCTCAAGATTTCCCGGTTAATGAAGTATT
TCCCTGATCAGAATGAGCTGCAGATGCGCCAGCGCCTAAAGGCATGTTGCACCATCACTAGTCCTACGTTTACAT
TCACTAACTTTAACACCAGGAATTCATGGAGTACCACCGCCGAGGCCCACATCAAGGTTTCTGGAGGTTGAAGTC
CACCTGGACACTACCATCAGACGCAGAGATGTTGAAAATGGTTGGCCCCGAACAAGTGGTGCTCACGGAAAGTAT
GCAGGTTGGGCAGCGACATCTCCAAGATGCTGGCTACAGCCAAGCAGAGGTGTCCGATGGAGACGAATCAAAGCT
GTCAGTTGAACAACAGCTGGCGCCCTGGATCACGACCAAGAACTTCCTGTATGCCACGCAGGCCAAGGCCATGTT
GCGGCTACACGGAGAAGGCGATCCTTCTGGCCGCGGTGAAGCTTTCAGTTTCATCCGAATCTCGATGAAGGACAT
TTTCGTCAAGGCTGGCGAAGACTACGAACAGAAGCTGGGTAAGCCATCTTCCTATTAATCCGAGTCGTCTCCTTA
TTCATTTGCCTTCTGAATAGCTGAGGCCGAAAGCCGACCGAAATCTGCACATCGCTATAACGTTGCTGAGCAACA
GCAGATATACAAGTCGGAAATAGAACGAATCTGGAAGGCTCAATACGACTCGTTAAGCAGAACCGACAAGCCTGA
GCTGACTGAGGAAGATGAAAGGCGGGACAAGCAAATGACCGCTGCCCTTGAAGCAGGACCTTCTGCTCGCCCCTC
CCCGGCCTTCAGTCGAGCGTCGTCTATCGACAGAGAACGTGAGGGCAGCGTTGGACCAGACGGAGCCAAGCGTAT
CCTCCGGATCAAACGCTTGGTGAGTTTCCTACCCATCGGACTCGTCCAGTTGCACACCCAATGCTGACTACGTAA
CAAAGATTGACGGTGAATGGCGAACGGAAATTATCCGCGACCCCGCCGTCATTCGAGCTTATGTTCGTGGAAGAC
AAGCGCTCGAAGAGGAAGCTACTCTAGCAGACCATCTCGCTCCAACAGGTGATGCAGACAAGGACAAGAGAGCCA
AGAAGAGGTACGATGACATACATTGTTCTGGGTCTTGTCTGGGCGGTACTGATCGGTCTTGGCTTTGCTTATCAC
GCAGGCTCGAAGAGGAAATCGCCCGAATGAAGAAAAACCAAGAGCGGCGACTACACAGGAAGAATGCCAAGATCG
TCAAAGAAGGTGGTGTTCCGATGCAACTCAGCAGGCCCATGAAGCCGGACACCACGGTAAGTGCTTCTCAAGGGT
CCCATTGATTCCCTGTTTACTAAGGCTCGGGCCGTTTTTCTCGCAGCGACGATGCGGTCATTGTGGGCAGATGGG
TCATATGAGTGAGTGGATTTCATGTCGAGCAAAACGAGTACCATTGTGACACGCGGTTTCACTAGAAACAAATCG
CAAATGTCCTCGTTGGGCAGAGTTCAACAGCGGGACGGCACCGCCTCCTCTGACGCCCTCCAGCTCTGCAACAAG
TCCACCGCCTGGGAGCGCTCCAATACCAATTCCAGGGACAGCTGGTTTCAACCGAAGCAGTGGGAGCTTCAGTTT
CCAGACAGCAGTCCCCTCCCCTCTGGCAACCAGTCCCCCTATGTCCGCCATGGACGACGACTACGCACCTTCAAC
GCCGTCTGGTTCCGCTCCAAAGTTGAAGCTGACTCTGAAACGAAACTAGATGCTTCCTTACTCTCTATTGCATTC
GTTCACTGTACAATAGTTTACATACAACATTTATCTTTAGGGTTCCTTGGG
Length 3951