CopciAB_464408
Coprinopsis cinerea A43mutB43mut pab1-1 #326

General data

Systematic name CopciAB_464408 Strain Coprinopsis cinerea Okayama 7
Standard name - Synonyms 464408
Uniprot id Functional description
Location scaffold_7:2299026..2300682 Strand -
Gene length (nt) 1657 Transcript length (nt) 1434
CDS length (nt) 1080 Protein length (aa) 359

Reciprocal best hits in model fungi

Strain name Gene / Protein name

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
0

Expression

Name Summary Attribution Assay type
Carbon metabolism Transcriptional changes along alternative morphogenetic paths of C. cinerea Xie et al. 2020 RNA-Seq
Sample Mean cpm SD cpm Se of mean
sclerotia 5.6613 0.5067 0.2926
oidia 7.5329 3.2422 1.8719
vegetative_mycelium 7.2464 2.1432 1.2374
primordia 0.2144 0.2113 0.122
hyphal_knot 6.6328 0.7126 0.4114
young_fruiting_body 0.0911 0.1578 0.0911
Complex carbon sources 1 (long incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control - glucose 6.1088 2.1217 1.225
Wheat bran 11.9857 4.2531 2.4555
Horse manure 4.6139 1.7155 0.9904
Oak leaves 3.7523 1.3801 0.7968
Hay 5.9714 0.6245 0.3605
Corn stalk 6.9005 1.7609 1.0166
Pectine 5.9711 0.2155 0.1244
Microcrystalline cellulose 7.8539 0.751 0.4336
Xylose 7.7103 1.3713 0.7917
Cellobiose 7.9547 1.88 1.0854
Lignin 3.3899 0.4941 0.2853
Apple peels 8.5296 2.4524 1.4159
Coprinopsis challenged with bacteria Transcriptional response to Bacillus subtilis and Escherichia coli. Kombrink et al. 2018 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control 12.9441 1.4524 0.8385
Bsubtilis 5.8102 1.2658 0.7308
Ecoli 3.476 0.8827 0.5096
Early development 1 Time series expression profiling of basidiospore and oidium germination Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
BS 0h 0 0 0
BS 4h 0.0209 0.0362 0.0209
BS 8h 0.102 0.0447 0.0258
BS 12h 0.3306 0.1709 0.0987
Oidia 0 h 0.2226 0.2383 0.1376
Oidia 18 h 0.5869 0.287 0.1657
Sclerotia 3.9997 1.3274 0.7663
Early development 2 Time series expression profiling of mycelial growth, light induction and fruiting body initiation. Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
DM 12h 2.3425 0.8524 0.4921
DM 36h 0.5879 0.164 0.0947
DM 60h 2.1473 2.751 1.5883
DM 84h 4.8612 0.7868 0.4542
DM 108h 3.3145 0.4107 0.2371
DM 132h 2.7663 0.7532 0.4348
DM 156hAE 11.6716 1.1295 0.6521
ELI1hAE 5.628 2.2583 1.3038
ELI2hAE 5.732 2.6154 1.51
LI2hAE 5.8617 1.7527 1.0119
LI6hAE 6.0943 1.3299 0.7678
LI12hAE 2.6036 0.9455 0.5459
LI18hAE 2.8085 1.0731 0.6196
LI 24hAE 10.2377 4.7291 2.7304
DM 156hAM 4.5241 0.3888 0.2245
ELI1hAM 3.3138 0.6943 0.4008
ELI2hAM 4.5494 1.7345 1.0014
LI2hAM 3.5262 0.7636 0.4409
LI6hAM 5.1195 1.3426 0.7752
LI12hAM 3.8263 0.4682 0.2703
LI18hAM 3.1427 1.5237 0.8797
LI 24hAM 5.5305 1.0365 0.5984
LI 24hHK 7.8653 2.399 1.385
L/D 6h 4.9618 0.7821 0.4516
L/D 12h 5.3852 2.611 1.5075
L/D 18h 3.2255 0.6756 0.3901
L/D 24h 2.0701 0.1533 0.0885
Fruiting body development RNA-Seq analysis of fruiting body development Krizsan et al. 2019 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Vegetative mycelium 7.1628 0.4906 0.2833
Hyphal knots 4.4106 2.1101 1.2183
Primordium 1 5.9188 2.8933 1.6705
Primordium 2 5.2299 1.2898 0.7447
Young Fruiting body cap 0.2967 0.0531 0.0307
Younf fruiting body gill 0.1516 0.1325 0.0765
Young fruiting body stipe 0.8653 0.6119 0.3533
Mature fruiting body cap_gill 0.8838 0.7463 0.4309
Mature fruiting body stipe 1.9014 0.0808 0.0467
Nitrogen sources (12h incubation) Expression profiling on diverse nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Complete medium - control 14.683 5.3186 3.0707
NH4NO3 14.1848 4.0145 2.3178
Proline 8.8253 1.2731 0.735
Tryptophan 9.0541 6.1381 3.5438
Isoleucin 8.5498 3.5279 2.0368
Arginine 14.4089 0.472 0.2725
Metionine 7.4797 0.5617 0.3243
NaNO3 6.894 0.2734 0.1579
Plant biomass (12h incubation) Expression profiling on diverse plant biomasses as carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 14.683 5.3186 3.0707
Citrus peel 3.2237 1.1857 0.6846
Poplar leaves 7.5313 0.8246 0.4761
Typha leaves 9.1031 4.5765 2.6422
Overwintered Salix leaves 9.2438 2.5191 1.4544
Reed flowering 6.1033 3.3432 1.9302
Tigernut 4.5743 1.0081 0.582
Energy cane 13.7077 4.8621 2.8072
Guar gum 11.9331 6.0231 3.4774
Apple peels 14.7631 2.8076 1.621
Cellobiose 13.0544 2.422 1.3983
Corn stalk 19.5448 5.8244 3.3627
Horse manure 15.6104 6.8325 3.9447
Lignin 5.9553 3.2787 1.893
Microcrystalline cellulose 10.2282 4.8516 2.8011
Oak leaves 15.1427 3.3195 1.9165
Pectin esterified 12.26 6.2581 3.6131
Poplar sawdust 15.8759 1.2208 0.7048
Wheat bran 18.4254 2.8047 1.6193
Chlamydomonas reinhardtii 14.1405 0.6015 0.3473
Vertatryl alcohol 2.7274 0.604 0.3487
Furfural 2.8079 0.3787 0.2186
Autoclaved mycelium 6.378 1.9729 1.1391
Simple and complex carbon and nitrogen sources Expression profiling on diverse complex carbon and nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 11.4655 3.0772 1.7766
Ribose 10.9342 1.9626 1.1331
Mannose 11.0768 3.923 2.774
Fructose 11.0011 2.4092 1.391
Arabinose 9.4529 0.1101 0.0636
Xylose 11.7174 1.8838 1.0876
Galacturonic acid 11.0716 1.512 0.873
Rhamnogalacturonan 10.7601 1.8724 1.081
Pectin esterified 9.8101 0.2014 0.1163
Polygalacturonic acid 12.3951 0.8144 0.4702
Sodium acetate 9.8633 1.0519 0.6073
No nitrogen 6.4094 1.8333 1.0585
BSA 9.9069 1.3233 0.764
Glutamine 8.5229 1.5999 0.9237
No phosphate 6.5994 1.2408 0.7164
No carbon 8.6665 0.0183 0.0129
No sulphur 6.1322 1.225 0.7073
Simple and complex carbon sources (12h incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 14.683 5.3186 3.0707
Amylose 15.0451 0.9222 0.5324
Fucose 15.2237 1.8878 1.0899
Galactose 16.6446 1.9776 1.1418
Lactose 10.0199 2.3101 1.3337
Maltose 9.994 3.0243 1.7461
Mannitol 8.9202 2.4079 1.3902
Rhamnose 12.7342 1.4124 0.8154
Sorbitol 13.7889 1.3073 0.7548
Trehalose 14.4806 0.5311 0.3066
Glycerol 9.7287 3.0889 1.7834
Glucuronic acid 14.8848 0.9448 0.5455
Arabinan 11.4495 4.3625 2.5187
Galactan 13.7952 3.9072 2.2558
Galactomannan 17.1807 4.4079 2.5449
Glucan 13.1761 4.412 2.5473
Xylan 15.1848 4.5881 2.649
Xyloglucan 17.2577 4.9214 2.8413
Arabinogalactan 16.8748 1.3456 0.7769
Pectin 21.5764 5.8304 3.3662
Rhamnogalacturonan 14.4741 3.4641 2
Polygalacturonic acid 14.1879 4.1946 2.4218
Mannan 18.8807 1.5078 0.8705
Amylopectin 13.4806 2.3542 1.3592
Inulin 9.8895 3.3197 1.9166
BSA 3.5614 0.804 0.4642
Starvation induced by water agar transfer Expression profiling on starvation induced by transfer to water agar Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Control 2.1473 2.751 1.5883
2h WAT 4.9294 2.037 1.176
4h WAT 2.6934 0.7279 0.4203
8h WAT 2.21 0.3554 0.2052
16h WAT 3.3251 0.4854 0.2802
24h WAT 3.3512 1.0465 0.6042
WAT hyphal knot -30h 1.8422 0.726 0.4192
WAT hyphal knot -22h 1.6701 0.7899 0.456
WAT hyphal knot -15h 2.1681 0.8446 0.4876
WAT hyphal knot -7.5h 3.093 0.7478 0.4317
WAT hyphal knot 2.5411 0.8283 0.4782
WAT hyphal knot +7.5h 3.79 1.8326 1.058
Straw time series Time series expression profiling on straw as a carbon source Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 8.8606 1.7841 1.03
Straw 3h 2.5631 1.1607 0.6701
Straw 6h 3.519 1.4889 0.8596
Straw 12h 7.781 0.9339 0.5392
Straw 24h 9.7963 5.8409 3.3722
Stress conditions 1 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 2.1693 0.9103 0.5255
Frost (-20C, 30min) 2.3916 0.7618 0.4398
Heat shock (47C, 2h) 0.0863 0.0748 0.0432
High CO2 4.4316 0.7963 0.4597
Drought (4% agar, 12h) 4.354 1.2213 0.7051
Oxidative (1mM H2O2, 3h) 1.0585 0.2202 0.1271
Acidic (pH4, 3h) 1.5815 0.4471 0.2581
Alkaline (pH9, 3h) 3.2873 1.1773 0.6797
Osmotic (sorbitol 2h) 1.1801 0.7325 0.4229
CongoRed (3h) 1.5654 0.3335 0.1925
Cobalt chloride control 2.3547 0.6355 0.3669
Cobalt chloride 2mM 1.6913 0.5907 0.3411
Stress conditions 2 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 2.6093 0.6744 0.3894
Cold stimulation 4.9051 2.6089 1.5062
Scratched surface 1.4243 0.2916 0.1683
Ca2+, 200mM, 24h 1.3244 0.6341 0.3661
Cu2+, 2mM, 6h 1.475 0.3737 0.2157
Voriconazole 1.3302 0.081 0.0468
Trichoderma interaction, early 2.8166 1.0059 0.5808
Trichoderma interaction 60h 0.1944 0.3367 0.1944
Cobalt chloride 2mM repeat 1.4555 0.9109 0.5259
Hypoxia 5.4007 2.0054 1.1578
Hypoxia control 5.7574 0.7768 0.4485
Protoplastation control 4.5698 0.4691 0.3317
Protoplastation 3.5h 1.0662 1.5079 1.0662
Protoplastation 1.5h 0.0501 0.0708 0.0501

General data

Systematic name -
Protein id CopciAB_464408.T0
Description

Annotation summary

0 100 200 300 359

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
Pfam PF17667 Fungal protein kinase IPR040976 26 165

SignalP

Prediction Start End Score
No records

Transmembrane domains

Domain n Start End Length
No records

InterPro

Accession Description
IPR011009 Protein kinase-like domain superfamily
IPR040976 Fungal-type protein kinase
IPR008266 Tyrosine-protein kinase, active site

GO

Go id Term Ontology
GO:0004672 protein kinase activity MF
GO:0006468 protein phosphorylation BP

KEGG

KEGG Orthology
No records

EggNOG

COG category Description
No records

CAZy

Class Family Subfamily
No records

Transcription factor

Group
No records

Conservation of CopciAB_464408 across fungi.

Arrow shows the origin of gene family containing CopciAB_464408.

Protein

Sequence id CopciAB_464408.T0
Sequence >CopciAB_464408.T0
MILSRFIWIMSTHRRLYASAMIKNDDTRIRRRIVLKENSCTTFYKVPSLKVACKIGKDIVKGLNLLREAGLIHRD
ISGDNCLIYFDEESESYYGKIADLEYCKEYRKVGATSHNSDPILGTKEFTAVEVEKQFFLAPSSLLPLETEFHRH
YLHDLESLYWLMVWCAFVLVHDDIQQVDVEMWEKAFFDLFPGVQGTSMKSSPGKLETICFPYAPLNALNRCGGRD
EDTLTVLEDLFNLANDLRSEYTRLQTIPQDAHAHQSISQDSRLQKLIYPQDTQLHKSIHPQDTQRPQVASSGTRC
RWAQEHFRPDIYHKFSNVLETVSNRLSEPDQVSMSMWKLYWEMEMERERVSERATGSHA
Length 359

Coding

Sequence id CopciAB_464408.T0
Sequence >CopciAB_464408.T0
ATGATACTATCGCGGTTCATCTGGATTATGAGCACGCATCGGCGACTCTACGCGTCAGCTATGATTAAGAACGAC
GATACTCGCATTCGGCGGCGCATAGTTCTCAAGGAGAACTCGTGCACGACGTTCTATAAAGTCCCGAGTTTGAAG
GTAGCTTGTAAGATAGGCAAAGACATTGTCAAAGGGTTGAATCTCTTGCGAGAAGCAGGGCTTATCCACCGAGAC
ATCAGCGGCGACAACTGTTTAATTTATTTCGACGAGGAAAGCGAGAGTTACTACGGCAAAATCGCAGATCTGGAA
TACTGCAAGGAGTATCGCAAAGTTGGAGCTACTAGTCATAATTCAGATCCCATCTTGGGCACAAAGGAATTCACG
GCCGTCGAGGTGGAGAAACAATTCTTCCTTGCGCCTTCAAGTCTCCTACCACTCGAGACAGAGTTTCATCGACAC
TACTTGCACGACCTGGAGTCACTCTACTGGCTCATGGTCTGGTGCGCCTTTGTCCTGGTTCACGACGACATTCAG
CAAGTCGATGTGGAAATGTGGGAGAAAGCGTTCTTCGATTTGTTCCCCGGGGTCCAGGGCACATCGATGAAATCC
TCTCCAGGCAAACTGGAGACCATCTGCTTTCCTTATGCACCGTTGAACGCACTGAACAGGTGCGGCGGAAGGGAT
GAGGATACTCTCACTGTCTTGGAGGACCTTTTCAACCTCGCGAACGACCTCCGGAGCGAGTATACCCGGCTTCAG
ACCATACCCCAGGATGCCCACGCCCATCAGTCAATATCCCAGGATTCCCGGCTTCAAAAGCTTATATACCCCCAG
GATACCCAGCTTCATAAATCTATACACCCCCAGGATACCCAGCGGCCTCAAGTTGCAAGCAGCGGCACTCGTTGT
CGATGGGCACAAGAACACTTTCGTCCCGACATATACCACAAGTTTTCCAACGTCTTGGAGACCGTTTCAAATCGT
CTATCGGAGCCGGATCAAGTGTCGATGTCGATGTGGAAGTTGTACTGGGAGATGGAGATGGAGAGGGAGAGGGTC
AGTGAGCGTGCCACTGGCAGTCATGCGTAG
Length 1080

Transcript

Sequence id CopciAB_464408.T0
Sequence >CopciAB_464408.T0
ATTCGTTTTGAATTCACTTCTTGGACTCGTTCTTCCCCTCACTTACACATCCTTAGCGTCCTCGTTCCGCCTGCG
ATCCTATTCCTACAAAGGCAGAGATAGCAGAGATCAGTACAGACTCCGAAGGAGGTCATCATGATCATGATGTAC
CAGTAGACGCCCGTGATCAATGATCCTGGATGATACTATCGCGGTTCATCTGGATTATGAGCACGCATCGGCGAC
TCTACGCGTCAGCTATGATTAAGAACGACGATACTCGCATTCGGCGGCGCATAGTTCTCAAGGAGAACTCGTGCA
CGACGTTCTATAAAGTCCCGAGTTTGAAGGTAGCTTGTAAGATAGGCAAAGACATTGTCAAAGGGTTGAATCTCT
TGCGAGAAGCAGGGCTTATCCACCGAGACATCAGCGGCGACAACTGTTTAATTTATTTCGACGAGGAAAGCGAGA
GTTACTACGGCAAAATCGCAGATCTGGAATACTGCAAGGAGTATCGCAAAGTTGGAGCTACTAGTCATAATTCAG
ATCCCATCTTGGGCACAAAGGAATTCACGGCCGTCGAGGTGGAGAAACAATTCTTCCTTGCGCCTTCAAGTCTCC
TACCACTCGAGACAGAGTTTCATCGACACTACTTGCACGACCTGGAGTCACTCTACTGGCTCATGGTCTGGTGCG
CCTTTGTCCTGGTTCACGACGACATTCAGCAAGTCGATGTGGAAATGTGGGAGAAAGCGTTCTTCGATTTGTTCC
CCGGGGTCCAGGGCACATCGATGAAATCCTCTCCAGGCAAACTGGAGACCATCTGCTTTCCTTATGCACCGTTGA
ACGCACTGAACAGGTGCGGCGGAAGGGATGAGGATACTCTCACTGTCTTGGAGGACCTTTTCAACCTCGCGAACG
ACCTCCGGAGCGAGTATACCCGGCTTCAGACCATACCCCAGGATGCCCACGCCCATCAGTCAATATCCCAGGATT
CCCGGCTTCAAAAGCTTATATACCCCCAGGATACCCAGCTTCATAAATCTATACACCCCCAGGATACCCAGCGGC
CTCAAGTTGCAAGCAGCGGCACTCGTTGTCGATGGGCACAAGAACACTTTCGTCCCGACATATACCACAAGTTTT
CCAACGTCTTGGAGACCGTTTCAAATCGTCTATCGGAGCCGGATCAAGTGTCGATGTCGATGTGGAAGTTGTACT
GGGAGATGGAGATGGAGAGGGAGAGGGTCAGTGAGCGTGCCACTGGCAGTCATGCGTAGTATTCCGGATCCGATG
GGACGTCCGCGTCAACGTCAATGGCATCGACTTTGGAATAGATATTAAGATATCGTTTTAACGTCTTACGGGAAT
GAGTACTATGCACCCAAGTAGGCTAACAAAGTCCTGAGGCACCCAGGGTTTCAAGCTATTGTCAATATACTAGTA
TGACGTCCA
Length 1434

Gene

Sequence id CopciAB_464408.T0
Sequence >CopciAB_464408.T0
ATTCGTTTTGAATTCACTTCTTGGACTCGTTCTTCCCCTCACTTACACATCCTTAGCGTCCTCGTTCCGCCTGCG
ATCCTATTCCTACAAAGGCAGAGATAGCAGAGATCAGTACAGACTCCGAAGGAGGTCATCATGATCATGATGTAC
CAGTAGACGCCCGTGATCAATGATCCTGGATGATACTATCGCGGTTCATCTGGATTATGAGGTGAGCAATCGGGT
ACATAGATACGTAAAGCCGTTCTTTCAACCTCATTTCTCGATTATCCAGCACGCATCGGCGACTCTACGCGTCAG
CTATGATTAAGAACGACGATACTCGCATTCGGCGGCGCATAGTTCTCAAGGAGAACTCGTGCACGACGTTCTATA
AAGTCCCGAGTTTGAAGGTAGCTTGTAAGATAGGCAAAGACATTGTCAAAGGTACAGTAGACTTCATCAATGTCG
AGTACTCCGATTACTAGTAGGCATTTCTCATCTCACAAATTCTTTCTTCTCTTCAGGGTTGAATCTCTTGCGAGA
AGCAGGGCTTATCCACCGAGACATCAGCGGCGACAACTGTTTAATTTATTTCGACGAGGAAAGCGAGAGTTACTA
CGGCAAAATCGCAGATCTGGAATACTGCAAGGAGTATCGCAAAGTTGGAGCTACTAGTCATAATTCAGATCCCAT
CTTGGTGAGGTTCGAAATCACCTTAGGTCAATGTCGACTATATATAAGTATACTGATGTGCAGTGGCTCGTATGA
TCGTATCAGGGCACAAAGGAATTCACGGCCGTCGAGGTGGAGAAACAATTCTTCCTTGCGCCTTCAAGTCTCCTA
CCACTCGAGACAGAGTTTCATCGACACTACTTGCACGACCTGGAGTCACTCTACTGGCTCATGGTCTGGTGCGCC
TTTGTCCTGGTTCACGACGACATTCAGCAAGTCGATGTGGAAATGTGGGAGAAAGCGTTCTTCGATTTGTTCCCC
GGGGTCCAGGGCACATCGATGAAATCCTCTCCAGGCAAACTGGAGACCATCTGCTTTCCTTATGCACCGTTGAAC
GCACTGAACAGGTGCGGCGGAAGGGATGAGGATACTCTCACTGTCTTGGAGGACCTTTTCAACCTCGCGAACGAC
CTCCGGAGCGAGTATACCCGGCTTCAGACCATACCCCAGGATGCCCACGCCCATCAGTCAATATCCCAGGATTCC
CGGCTTCAAAAGCTTATATACCCCCAGGATACCCAGCTTCATAAATCTATACACCCCCAGGATACCCAGCGGCCT
CAAGTTGCAAGCAGCGGCACTCGTTGTCGATGGGCACAAGAACACTTTCGTCCCGACATATACCACAAGTTTTCC
AACGTCTTGGAGACCGTTTCAAATCGTCTATCGGAGCCGGATCAAGTGTCGATGTCGATGTGGAAGTTGTACTGG
GAGATGGAGATGGAGAGGGAGAGGGTCAGTGAGCGTGCCACTGGCAGTCATGCGTAGTATTCCGGATCCGATGGG
ACGTCCGCGTCAACGTCAATGGCATCGACTTTGGAATAGATATTAAGATATCGTTTTAACGTCTTACGGGAATGA
GTACTATGCACCCAAGTAGGCTAACAAAGTCCTGAGGCACCCAGGGTTTCAAGCTATTGTCAATATACTAGTATG
ACGTCCA
Length 1657