CopciAB_469795
Coprinopsis cinerea A43mutB43mut pab1-1 #326

General data

Systematic name CopciAB_469795 Strain Coprinopsis cinerea Okayama 7
Standard name - Synonyms 469795
Uniprot id Functional description
Location scaffold_10:1721390..1722617 Strand -
Gene length (nt) 1228 Transcript length (nt) 1056
CDS length (nt) 1056 Protein length (aa) 351

Reciprocal best hits in model fungi

Strain name Gene / Protein name

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
0

Expression

Name Summary Attribution Assay type
Carbon metabolism Transcriptional changes along alternative morphogenetic paths of C. cinerea Xie et al. 2020 RNA-Seq
Sample Mean cpm SD cpm Se of mean
sclerotia 0 0 0
oidia 0.0229 0.0396 0.0229
vegetative_mycelium 0 0 0
primordia 0.0725 0.0736 0.0425
hyphal_knot 0 0 0
young_fruiting_body 0 0 0
Complex carbon sources 1 (long incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control - glucose 0 0 0
Wheat bran 0 0 0
Horse manure 0 0 0
Oak leaves 0 0 0
Hay 0 0 0
Corn stalk 0 0 0
Pectine 0 0 0
Microcrystalline cellulose 0 0 0
Xylose 0 0 0
Cellobiose 0 0 0
Lignin 0 0 0
Apple peels 0 0 0
Coprinopsis challenged with bacteria Transcriptional response to Bacillus subtilis and Escherichia coli. Kombrink et al. 2018 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control 0 0 0
Bsubtilis 0.0167 0.0289 0.0167
Ecoli 0 0 0
Early development 1 Time series expression profiling of basidiospore and oidium germination Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
BS 0h 0 0 0
BS 4h 0 0 0
BS 8h 0.0033 0.0056 0.0033
BS 12h 0 0 0
Oidia 0 h 0.0269 0.0332 0.0192
Oidia 18 h 0 0 0
Sclerotia 0 0 0
Early development 2 Time series expression profiling of mycelial growth, light induction and fruiting body initiation. Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
DM 12h 0 0 0
DM 36h 0.0226 0.0391 0.0226
DM 60h 0.0826 0.0844 0.0487
DM 84h 0 0 0
DM 108h 0 0 0
DM 132h 0 0 0
DM 156hAE 0 0 0
ELI1hAE 0 0 0
ELI2hAE 0 0 0
LI2hAE 0 0 0
LI6hAE 0 0 0
LI12hAE 0 0 0
LI18hAE 0 0 0
LI 24hAE 0 0 0
DM 156hAM 0.0618 0.1071 0.0618
ELI1hAM 0 0 0
ELI2hAM 0 0 0
LI2hAM 0 0 0
LI6hAM 0 0 0
LI12hAM 0 0 0
LI18hAM 0 0 0
LI 24hAM 0 0 0
LI 24hHK 0 0 0
L/D 6h 0 0 0
L/D 12h 0 0 0
L/D 18h 0.0027 0.0047 0.0027
L/D 24h 0 0 0
Fruiting body development RNA-Seq analysis of fruiting body development Krizsan et al. 2019 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Vegetative mycelium 0 0 0
Hyphal knots 0 0 0
Primordium 1 0.01 0.0173 0.01
Primordium 2 0 0 0
Young Fruiting body cap 0 0 0
Younf fruiting body gill 0 0 0
Young fruiting body stipe 0 0 0
Mature fruiting body cap_gill 0.0383 0.0663 0.0383
Mature fruiting body stipe 0 0 0
Nitrogen sources (12h incubation) Expression profiling on diverse nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Complete medium - control 0 0 0
NH4NO3 0 0 0
Proline 0 0 0
Tryptophan 0 0 0
Isoleucin 0 0 0
Arginine 0 0 0
Metionine 0.0175 0.0303 0.0175
NaNO3 0 0 0
Plant biomass (12h incubation) Expression profiling on diverse plant biomasses as carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 0 0 0
Citrus peel 0 0 0
Poplar leaves 0 0 0
Typha leaves 0 0 0
Overwintered Salix leaves 0 0 0
Reed flowering 0.0572 0.099 0.0572
Tigernut 0.0368 0.0637 0.0368
Energy cane 0.0233 0.0404 0.0233
Guar gum 0 0 0
Apple peels 0 0 0
Cellobiose 0 0 0
Corn stalk 0 0 0
Horse manure 0 0 0
Lignin 0 0 0
Microcrystalline cellulose 0 0 0
Oak leaves 0 0 0
Pectin esterified 0.0346 0.06 0.0346
Poplar sawdust 0 0 0
Wheat bran 0 0 0
Chlamydomonas reinhardtii 0.0505 0.0875 0.0505
Vertatryl alcohol 0 0 0
Furfural 0 0 0
Autoclaved mycelium 0 0 0
Simple and complex carbon and nitrogen sources Expression profiling on diverse complex carbon and nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 0 0 0
Ribose 0.0273 0.0474 0.0273
Mannose 0 0 0
Fructose 0.0193 0.0334 0.0193
Arabinose 0 0 0
Xylose 0.0321 0.0557 0.0321
Galacturonic acid 0 0 0
Rhamnogalacturonan 0 0 0
Pectin esterified 0 0 0
Polygalacturonic acid 0 0 0
Sodium acetate 0.1042 0.0947 0.0547
No nitrogen 0 0 0
BSA 0 0 0
Glutamine 0 0 0
No phosphate 0 0 0
No carbon 0 0 0
No sulphur 0 0 0
Simple and complex carbon sources (12h incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 0 0 0
Amylose 0 0 0
Fucose 0 0 0
Galactose 0 0 0
Lactose 0 0 0
Maltose 0 0 0
Mannitol 0 0 0
Rhamnose 0.0275 0.0477 0.0275
Sorbitol 0 0 0
Trehalose 0 0 0
Glycerol 0 0 0
Glucuronic acid 0 0 0
Arabinan 0.0234 0.0405 0.0234
Galactan 0 0 0
Galactomannan 0.1753 0.3037 0.1753
Glucan 0 0 0
Xylan 0 0 0
Xyloglucan 0.0323 0.0559 0.0323
Arabinogalactan 0 0 0
Pectin 0 0 0
Rhamnogalacturonan 0 0 0
Polygalacturonic acid 0 0 0
Mannan 0 0 0
Amylopectin 0 0 0
Inulin 0.0367 0.0636 0.0367
BSA 0 0 0
Starvation induced by water agar transfer Expression profiling on starvation induced by transfer to water agar Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Control 0.0826 0.0844 0.0487
2h WAT 0.1677 0.2904 0.1677
4h WAT 0 0 0
8h WAT 0 0 0
16h WAT 0 0 0
24h WAT 0 0 0
WAT hyphal knot -30h 0.0625 0.0978 0.0564
WAT hyphal knot -22h 0 0 0
WAT hyphal knot -15h 0 0 0
WAT hyphal knot -7.5h 0 0 0
WAT hyphal knot 0 0 0
WAT hyphal knot +7.5h 0.1772 0.3069 0.1772
Straw time series Time series expression profiling on straw as a carbon source Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 0.0159 0.0275 0.0159
Straw 3h 0 0 0
Straw 6h 0 0 0
Straw 12h 0 0 0
Straw 24h 0 0 0
Stress conditions 1 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 0 0 0
Frost (-20C, 30min) 0 0 0
Heat shock (47C, 2h) 0 0 0
High CO2 0 0 0
Drought (4% agar, 12h) 0.009 0.0156 0.009
Oxidative (1mM H2O2, 3h) 0 0 0
Acidic (pH4, 3h) 0 0 0
Alkaline (pH9, 3h) 0 0 0
Osmotic (sorbitol 2h) 0 0 0
CongoRed (3h) 0 0 0
Cobalt chloride control 0.006 0.0104 0.006
Cobalt chloride 2mM 0.0324 0.0562 0.0324
Stress conditions 2 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 0.0099 0.0172 0.0099
Cold stimulation 0.0416 0.0721 0.0416
Scratched surface 0 0 0
Ca2+, 200mM, 24h 0 0 0
Cu2+, 2mM, 6h 0 0 0
Voriconazole 0 0 0
Trichoderma interaction, early 0 0 0
Trichoderma interaction 60h 0.4293 0.4231 0.2443
Cobalt chloride 2mM repeat 0 0 0
Hypoxia 0.0117 0.0203 0.0117
Hypoxia control 0 0 0
Protoplastation control 0.0219 0.0309 0.0219
Protoplastation 3.5h 0 0 0
Protoplastation 1.5h 0 0 0

General data

Systematic name -
Protein id CopciAB_469795.T0
Description

Annotation summary

0 100 200 300 351

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
Pfam PF17667 Fungal protein kinase IPR040976 16 187

SignalP

Prediction Start End Score
No records

Transmembrane domains

Domain n Start End Length
No records

InterPro

Accession Description
IPR040976 Fungal-type protein kinase
IPR011009 Protein kinase-like domain superfamily

GO

Go id Term Ontology
No records

KEGG

KEGG Orthology
No records

EggNOG

COG category Description
No records

CAZy

Class Family Subfamily
No records

Transcription factor

Group
No records

Conservation of CopciAB_469795 across fungi.

Arrow shows the origin of gene family containing CopciAB_469795.

Protein

Sequence id CopciAB_469795.T0
Sequence >CopciAB_469795.T0
MKEGQLNTESPASPTRSEKRSLGTPHPVTDSYSKVIEPPTPLRHHSRTHRRTLFTERCTPFYGVPNPKVAFEVFK
DLVMGLNLLRKAGFLHRNVSGSACMLFYNKEAQKYQVKLADLEYCKRYQATGFHDPKSVSREFAAVEVSSKRWVF
TSNPTQGYPRLRTNMLPPFHRHYYHDLESLFWLLIWYTITYLPIDNPEAKQDIVATINTASWKTNIFDVLFPREH
QSQHGSRAHFWDNQTRVYDNLAVEVQWPEETVDVLERLSKIISDFHSAYTTLHRNPPKDNAARWPDAKFSDSLYE
KFTSILDDVATHVGTLDSVSMWDLMNNRRMMNKRPGEGEDDRAVTKRRFDE
Length 351

Coding

Sequence id CopciAB_469795.T0
Sequence >CopciAB_469795.T0
ATGAAGGAAGGACAATTAAACACTGAATCGCCGGCTTCACCAACCAGGTCGGAAAAGCGCTCGTTGGGAACACCT
CACCCTGTAACCGACAGTTATTCCAAAGTCATCGAACCTCCGACCCCCCTCCGGCACCATTCACGTACCCATCGT
CGCACATTGTTCACGGAAAGGTGCACGCCTTTCTACGGAGTCCCTAATCCCAAGGTTGCATTTGAGGTCTTCAAA
GACCTCGTTATGGGTCTGAACCTTCTGCGAAAAGCAGGATTTTTGCATCGGAATGTCAGCGGCTCCGCCTGCATG
TTGTTTTACAACAAGGAGGCGCAAAAGTATCAGGTTAAACTGGCAGATTTGGAATACTGCAAGCGATATCAAGCG
ACAGGTTTCCATGATCCTAAATCTGTCTCCCGTGAATTTGCCGCTGTTGAAGTGTCGAGTAAGCGGTGGGTGTTC
ACCAGTAATCCGACCCAGGGATATCCCAGGTTGCGCACAAACATGCTTCCCCCTTTCCATCGGCATTACTATCAC
GATCTGGAGTCGCTCTTCTGGCTGCTAATCTGGTATACGATCACCTATTTGCCCATCGATAACCCGGAAGCAAAG
CAGGACATTGTGGCTACAATCAACACTGCCTCGTGGAAGACAAATATTTTTGACGTTTTGTTCCCTCGGGAACAT
CAATCACAACATGGCAGCAGAGCACACTTCTGGGACAATCAAACTCGCGTTTACGATAATTTGGCGGTCGAGGTC
CAATGGCCAGAAGAAACTGTAGATGTCCTCGAGAGACTCAGCAAAATAATTTCCGACTTTCATTCAGCATATACA
ACACTTCATCGCAATCCCCCCAAGGATAACGCAGCACGATGGCCCGACGCAAAGTTCAGCGATTCACTATACGAG
AAGTTTACCAGCATCCTAGACGATGTTGCTACACACGTGGGCACTCTCGATTCCGTCTCAATGTGGGATTTAATG
AATAACAGGAGGATGATGAACAAGAGGCCTGGGGAAGGGGAGGACGATAGGGCCGTGACCAAGAGACGATTTGAC
GAGTAG
Length 1056

Transcript

Sequence id CopciAB_469795.T0
Sequence >CopciAB_469795.T0
ATGAAGGAAGGACAATTAAACACTGAATCGCCGGCTTCACCAACCAGGTCGGAAAAGCGCTCGTTGGGAACACCT
CACCCTGTAACCGACAGTTATTCCAAAGTCATCGAACCTCCGACCCCCCTCCGGCACCATTCACGTACCCATCGT
CGCACATTGTTCACGGAAAGGTGCACGCCTTTCTACGGAGTCCCTAATCCCAAGGTTGCATTTGAGGTCTTCAAA
GACCTCGTTATGGGTCTGAACCTTCTGCGAAAAGCAGGATTTTTGCATCGGAATGTCAGCGGCTCCGCCTGCATG
TTGTTTTACAACAAGGAGGCGCAAAAGTATCAGGTTAAACTGGCAGATTTGGAATACTGCAAGCGATATCAAGCG
ACAGGTTTCCATGATCCTAAATCTGTCTCCCGTGAATTTGCCGCTGTTGAAGTGTCGAGTAAGCGGTGGGTGTTC
ACCAGTAATCCGACCCAGGGATATCCCAGGTTGCGCACAAACATGCTTCCCCCTTTCCATCGGCATTACTATCAC
GATCTGGAGTCGCTCTTCTGGCTGCTAATCTGGTATACGATCACCTATTTGCCCATCGATAACCCGGAAGCAAAG
CAGGACATTGTGGCTACAATCAACACTGCCTCGTGGAAGACAAATATTTTTGACGTTTTGTTCCCTCGGGAACAT
CAATCACAACATGGCAGCAGAGCACACTTCTGGGACAATCAAACTCGCGTTTACGATAATTTGGCGGTCGAGGTC
CAATGGCCAGAAGAAACTGTAGATGTCCTCGAGAGACTCAGCAAAATAATTTCCGACTTTCATTCAGCATATACA
ACACTTCATCGCAATCCCCCCAAGGATAACGCAGCACGATGGCCCGACGCAAAGTTCAGCGATTCACTATACGAG
AAGTTTACCAGCATCCTAGACGATGTTGCTACACACGTGGGCACTCTCGATTCCGTCTCAATGTGGGATTTAATG
AATAACAGGAGGATGATGAACAAGAGGCCTGGGGAAGGGGAGGACGATAGGGCCGTGACCAAGAGACGATTTGAC
GAGTAG
Length 1056

Gene

Sequence id CopciAB_469795.T0
Sequence >CopciAB_469795.T0
ATGAAGGAAGGACAATTAAACACTGAATCGCCGGTGAGCTCGGGCTAGCGATCTCCATGCCATTCGGTCCTGATT
CGTTCCCGGGCATGCAAAGGCTTCACCAACCAGGTCGGAAAAGCGCTCGTTGGGAACACCTCACCCTGTAACCGA
CAGTTATTCCAAAGTCATCGAACCTCCGACCCCCCTCCGGCACCATTCACGTACCCATCGTCGCACATTGTTCAC
GGAAAGGTGCACGCCTTTCTACGGAGTCCCTAATCCCAAGGTTGCATTTGAGGTCTTCAAAGACCTCGTTATGGG
TACGCTACGGGCTCTACCTCGGCGTGCCCTTCAGAGCTGACGGTAGAGCCAGGTCTGAACCTTCTGCGAAAAGCA
GGATTTTTGCATCGGAATGTCAGCGGCTCCGCCTGCATGTTGTTTTACAACAAGGAGGCGCAAAAGTATCAGGTT
AAACTGGCAGATTTGGAATACTGCAAGCGATATCAAGCGACAGGTTTCCATGATCCTAAATCTGTATGTGCTCAA
CATTCTATGGATGATCTACTACTGTTTGACCATTGTCCTAATCTAGGTCTCCCGTGAATTTGCCGCTGTTGAAGT
GTCGAGTAAGCGGTGGGTGTTCACCAGTAATCCGACCCAGGGATATCCCAGGTTGCGCACAAACATGCTTCCCCC
TTTCCATCGGCATTACTATCACGATCTGGAGTCGCTCTTCTGGCTGCTAATCTGGTATACGATCACCTATTTGCC
CATCGATAACCCGGAAGCAAAGCAGGACATTGTGGCTACAATCAACACTGCCTCGTGGAAGACAAATATTTTTGA
CGTTTTGTTCCCTCGGGAACATCAATCACAACATGGCAGCAGAGCACACTTCTGGGACAATCAAACTCGCGTTTA
CGATAATTTGGCGGTCGAGGTCCAATGGCCAGAAGAAACTGTAGATGTCCTCGAGAGACTCAGCAAAATAATTTC
CGACTTTCATTCAGCATATACAACACTTCATCGCAATCCCCCCAAGGATAACGCAGCACGATGGCCCGACGCAAA
GTTCAGCGATTCACTATACGAGAAGTTTACCAGCATCCTAGACGATGTTGCTACACACGTGGGCACTCTCGATTC
CGTCTCAATGTGGGATTTAATGAATAACAGGAGGATGATGAACAAGAGGCCTGGGGAAGGGGAGGACGATAGGGC
CGTGACCAAGAGACGATTTGACGAGTAG
Length 1228