CopciAB_474858
Coprinopsis cinerea A43mutB43mut pab1-1 #326

General data

Systematic name CopciAB_474858 Strain Coprinopsis cinerea Okayama 7
Standard name SSK2 Synonyms 474858
Uniprot id Functional description Serine/Threonine protein kinases, catalytic domain
Location scaffold_1:1985182..1989662 Strand -
Gene length (nt) 4481 Transcript length (nt) 4280
CDS length (nt) 4113 Protein length (aa) 1370

Reciprocal best hits in model fungi

Strain name Gene / Protein name
Saccharomyces cerevisiae YNR031C_SSK2
Aspergillus nidulans AN10153_sskB
Neurospora crassa os-4
Schizosaccharomyces pombe wis4

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
Hypsizygus marmoreus strain 51987-8 Hypma_RDB28855 65.3 0 1779
Agrocybe aegerita Agrae_CAA7259957 64.3 0 1687
Agaricus bisporus var. burnettii JB137-S8 Agabi_varbur_1_117102 62.9 0 1653
Lentinula edodes NBRC 111202 Lenedo1_1165317 60.1 0 1609
Lentinula edodes W1-26 v1.0 Lentinedodes1_15499 62 0 1590
Pleurotus eryngii ATCC 90797 Pleery1_1443846 58.2 0 1575
Pleurotus ostreatus PC9 PleosPC9_1_115597 58.3 0 1575
Pleurotus ostreatus PC15 PleosPC15_2_1095933 58 0 1562
Agaricus bisporus var bisporus (H97) Agabi_varbisH97_2_214884 64.8 0 1560
Ganoderma sp. 10597 SS1 v1.0 Gansp1_124692 59.5 0 1530
Schizophyllum commune H4-8 Schco3_2488497 57.5 0 1530
Grifola frondosa Grifr_OBZ79147 56.3 0 1523
Auricularia subglabra Aurde3_1_1227345 51 0 1309
Flammulina velutipes Flave_chr08AA00665 52.6 0 1296
Lentinula edodes B17 Lened_B_1_1_4121 60.2 1.207E-211 697

Expression

Name Summary Attribution Assay type
Carbon metabolism Transcriptional changes along alternative morphogenetic paths of C. cinerea Xie et al. 2020 RNA-Seq
Sample Mean cpm SD cpm Se of mean
sclerotia 152.1869 7.3278 4.2307
oidia 119.458 8.1544 4.708
vegetative_mycelium 113.0427 6.6723 3.8523
primordia 79.8674 5.8803 3.395
hyphal_knot 121.653 3.3669 1.9439
young_fruiting_body 74.7094 7.6298 4.4051
Complex carbon sources 1 (long incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control - glucose 169.971 8.6399 4.9883
Wheat bran 106.8443 27.8836 16.0986
Horse manure 119.3173 34.2703 19.786
Oak leaves 113.0894 42.6633 24.6317
Hay 106.4557 27.1495 15.6748
Corn stalk 117.8253 25.0855 14.4831
Pectine 136.0032 14.3186 8.2669
Microcrystalline cellulose 157.6163 14.1664 8.179
Xylose 154.1742 17.0205 9.8268
Cellobiose 181.4374 25.5782 14.7676
Lignin 131.3344 38.8152 22.41
Apple peels 166.9294 14.3167 8.2658
Coprinopsis challenged with bacteria Transcriptional response to Bacillus subtilis and Escherichia coli. Kombrink et al. 2018 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control 134.5354 2.7782 1.604
Bsubtilis 115.9739 8.7611 5.0582
Ecoli 108.7402 1.0293 0.5943
Early development 1 Time series expression profiling of basidiospore and oidium germination Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
BS 0h 38.0065 5.134 2.9641
BS 4h 38.8273 2.1568 1.2452
BS 8h 43.2614 1.9288 1.1136
BS 12h 41.2253 4.5589 2.6321
Oidia 0 h 30.8007 7.067 4.0801
Oidia 18 h 42.0233 2.0254 1.1694
Sclerotia 59.915 20.5714 11.8769
Early development 2 Time series expression profiling of mycelial growth, light induction and fruiting body initiation. Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
DM 12h 45.4164 1.6288 0.9404
DM 36h 42.43 2.5983 1.5001
DM 60h 47.4815 9.0034 5.1981
DM 84h 53.0281 9.1381 5.2759
DM 108h 51.2641 2.9274 1.6901
DM 132h 48.6104 4.6328 2.6748
DM 156hAE 79.6614 3.4019 1.9641
ELI1hAE 56.3306 5.1971 3.0006
ELI2hAE 63.5287 3.439 1.9855
LI2hAE 59.9727 1.5861 0.9157
LI6hAE 62.1057 1.7579 1.0149
LI12hAE 57.0792 8.7205 5.0348
LI18hAE 59.5842 13.2207 7.633
LI 24hAE 77.9763 4.7977 2.7699
DM 156hAM 64.5869 2.2453 1.2963
ELI1hAM 52.4905 9.0595 5.2305
ELI2hAM 56.6142 7.9017 4.562
LI2hAM 50.3876 11.1341 6.4283
LI6hAM 54.5395 1.221 0.7049
LI12hAM 55.5367 4.4124 2.5475
LI18hAM 58.0701 5.4064 3.1214
LI 24hAM 65.6256 3.4683 2.0024
LI 24hHK 70.762 4.985 2.8781
L/D 6h 76.1961 10.9663 6.3314
L/D 12h 78.9288 10.0105 5.7796
L/D 18h 59.0082 7.0357 4.062
L/D 24h 59.7571 8.4541 4.881
Fruiting body development RNA-Seq analysis of fruiting body development Krizsan et al. 2019 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Vegetative mycelium 86.2187 2.2441 1.2956
Hyphal knots 77.9846 3.9904 2.3039
Primordium 1 91.1327 5.9589 3.4404
Primordium 2 82.345 6.8462 3.9526
Young Fruiting body cap 77.4742 3.4672 2.0018
Younf fruiting body gill 52.1605 1.9275 1.1129
Young fruiting body stipe 74.4455 7.542 4.3544
Mature fruiting body cap_gill 54.5639 2.6662 1.5394
Mature fruiting body stipe 87.7098 6.333 3.6564
Nitrogen sources (12h incubation) Expression profiling on diverse nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Complete medium - control 129.4414 9.2402 5.3348
NH4NO3 108.7931 6.0875 3.5146
Proline 99.1835 5.3489 3.0882
Tryptophan 104.952 11.6175 6.7074
Isoleucin 108.0073 5.6134 3.2409
Arginine 100.6296 7.0708 4.0824
Metionine 96.9498 3.0294 1.749
NaNO3 105.2366 3.7251 2.1507
Plant biomass (12h incubation) Expression profiling on diverse plant biomasses as carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 129.4414 9.2402 5.3348
Citrus peel 103.9926 16.3933 9.4647
Poplar leaves 117.1107 7.4394 4.2951
Typha leaves 104.1152 9.2958 5.3669
Overwintered Salix leaves 106.5659 19.3539 11.174
Reed flowering 124.1199 20.7272 11.9669
Tigernut 102.4466 5.3478 3.0875
Energy cane 107.5191 3.6513 2.1081
Guar gum 104.5018 23.2156 13.4035
Apple peels 81.5056 11.8325 6.8315
Cellobiose 101.9538 0.2176 0.1256
Corn stalk 102.4415 3.397 1.9613
Horse manure 104.8196 2.3529 1.3584
Lignin 106.8526 54.6208 31.5353
Microcrystalline cellulose 93.5837 12.4382 7.1812
Oak leaves 109.9316 13.5624 7.8302
Pectin esterified 78.6269 6.7473 3.8955
Poplar sawdust 105.4284 15.475 8.9345
Wheat bran 99.5802 8.1969 4.7325
Chlamydomonas reinhardtii 113.1567 8.6688 5.0049
Vertatryl alcohol 102.0537 2.9208 1.6863
Furfural 108.1804 13.1642 7.6004
Autoclaved mycelium 110.7951 11.4839 6.6302
Simple and complex carbon and nitrogen sources Expression profiling on diverse complex carbon and nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 173.7865 8.4748 4.8929
Ribose 154.9891 5.0206 2.8986
Mannose 185.5253 26.4286 18.6878
Fructose 175.9306 9.7728 5.6423
Arabinose 179.3134 12.5772 7.2615
Xylose 169.3822 5.6841 3.2817
Galacturonic acid 156.4861 10.6104 6.1259
Rhamnogalacturonan 159.7708 9.3357 5.39
Pectin esterified 151.5794 4.9347 2.849
Polygalacturonic acid 159.5818 14.9585 8.6363
Sodium acetate 154.0806 13.5698 7.8345
No nitrogen 169.6511 15.91 9.1856
BSA 168.861 2.7657 1.5968
Glutamine 158.8855 6.9974 4.04
No phosphate 142.324 9.1969 5.3098
No carbon 157.6407 14.1062 9.9746
No sulphur 169.8104 14.4837 8.3622
Simple and complex carbon sources (12h incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 129.4414 9.2402 5.3348
Amylose 107.3988 10.8414 6.2593
Fucose 111.5562 1.2187 0.7036
Galactose 118.9005 8.3948 4.8467
Lactose 114.4176 9.6741 5.5853
Maltose 112.3505 13.05 7.5344
Mannitol 122.3606 5.1513 2.9741
Rhamnose 128.1344 24.6507 14.2321
Sorbitol 113.5213 5.4244 3.1318
Trehalose 111.7309 1.8769 1.0836
Glycerol 116.9475 14.0169 8.0927
Glucuronic acid 121.6928 4.7137 2.7214
Arabinan 96.5902 12.5894 7.2685
Galactan 93.8517 5.9384 3.4285
Galactomannan 106.4115 17.4552 10.0778
Glucan 125.2984 20.9863 12.1165
Xylan 102.1891 16.3248 9.4251
Xyloglucan 101.7065 15.629 9.0234
Arabinogalactan 110.7545 9.4747 5.4702
Pectin 95.2514 27.6569 15.9677
Rhamnogalacturonan 86.2007 4.652 2.6858
Polygalacturonic acid 126.6528 10.152 5.8613
Mannan 109.0939 2.3434 1.353
Amylopectin 92.5065 19.6378 11.3379
Inulin 101.7737 10.9511 6.3226
BSA 121.4488 7.3858 4.2642
Starvation induced by water agar transfer Expression profiling on starvation induced by transfer to water agar Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Control 47.4815 9.0034 5.1981
2h WAT 70.0085 3.2632 1.884
4h WAT 63.9755 14.6087 8.4344
8h WAT 61.9126 1.9116 1.1037
16h WAT 59.1946 3.6714 2.1197
24h WAT 57.4233 3.9359 2.2724
WAT hyphal knot -30h 54.5166 1.8422 1.0636
WAT hyphal knot -22h 49.0987 6.2919 3.6326
WAT hyphal knot -15h 56.0537 4.0998 2.367
WAT hyphal knot -7.5h 63.5556 3.0833 1.7801
WAT hyphal knot 56.5933 3.6788 2.1239
WAT hyphal knot +7.5h 68.7597 7.4921 4.3256
Straw time series Time series expression profiling on straw as a carbon source Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 81.8668 18.2465 10.5346
Straw 3h 71.8485 13.8422 7.9918
Straw 6h 61.2274 12.1923 7.0392
Straw 12h 92.6785 3.9867 2.3017
Straw 24h 82.5513 13.0531 7.5362
Stress conditions 1 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 50.2033 0.7015 0.405
Frost (-20C, 30min) 56.0562 3.2138 1.8555
Heat shock (47C, 2h) 84.3163 4.0009 2.3099
High CO2 51.8742 3.697 2.1345
Drought (4% agar, 12h) 63.1515 6.3937 3.6914
Oxidative (1mM H2O2, 3h) 32.6873 5.4307 3.1354
Acidic (pH4, 3h) 49.8278 2.4323 1.4043
Alkaline (pH9, 3h) 40.9196 3.0403 1.7553
Osmotic (sorbitol 2h) 42.9216 6.3565 3.6699
CongoRed (3h) 39.3723 5.0427 2.9114
Cobalt chloride control 60.4165 2.5197 1.4548
Cobalt chloride 2mM 53.1405 2.3355 1.3484
Stress conditions 2 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 38.3867 13.4143 7.7448
Cold stimulation 40.1474 6.5338 3.7723
Scratched surface 47.2202 5.0927 2.9402
Ca2+, 200mM, 24h 34.6453 4.8895 2.823
Cu2+, 2mM, 6h 52.1005 12.6216 7.2871
Voriconazole 39.9215 11.9377 6.8923
Trichoderma interaction, early 50.392 6.0871 3.5144
Trichoderma interaction 60h 26.4898 14.2836 8.2466
Cobalt chloride 2mM repeat 45.5408 5.4601 3.1524
Hypoxia 49.6016 9.2953 5.3666
Hypoxia control 46.384 5.5357 3.1961
Protoplastation control 57.6646 5.9393 4.1997
Protoplastation 3.5h 34.2347 7.0169 4.9617
Protoplastation 1.5h 28.4538 4.5364 3.2077

General data

Systematic name SSK2
Protein id CopciAB_474858.T0
Description Serine/Threonine protein kinases, catalytic domain

Annotation summary

0 300 600 900 1200 1370

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
CDD cd06626 STKc_MEKK4 - 1040 1321
Pfam PF00069 Protein kinase domain IPR000719 1042 1322

SignalP

Prediction Start End Score
No records

Transmembrane domains

Domain n Start End Length
No records

InterPro

Accession Description
IPR017441 Protein kinase, ATP binding site
IPR008271 Serine/threonine-protein kinase, active site
IPR000719 Protein kinase domain
IPR011009 Protein kinase-like domain superfamily

GO

Go id Term Ontology
GO:0005524 ATP binding MF
GO:0004672 protein kinase activity MF
GO:0006468 protein phosphorylation BP

KEGG

KEGG Orthology
K11230

EggNOG

COG category Description
T Serine/Threonine protein kinases, catalytic domain

CAZy

Class Family Subfamily
No records

Transcription factor

Group
No records

Conservation of CopciAB_474858 across fungi.

Arrow shows the origin of gene family containing CopciAB_474858.

Protein

Sequence id CopciAB_474858.T0
Sequence >CopciAB_474858.T0
MRKHNPTLYTLSERDSDDINDDDENVSWQHEEHDPVPGPSNVSASSNLNRSVRSSLKGRQSSHSKVPTNVNTKQD
IYSQFVKRYRTKEHRYVDEMEDFRSDPDSHYYHKGLGQLVDVGDASDDEDYMSLIGGNDGIIEGSMDEMAHPVTE
KDQRRLEWQSLLSSVLSGEVLKSEKTRLAVALDSFGDEQNNFNMNIWLGIRAKFHGRSIEEEKRKLDEKRIRIVD
GVIDEIMNFRVVQDEAAPTNSAMKQVTNILHRLDVAQSLYPHLKAFYLDKPKAQEGPFQARCDALNTWFTILSSL
KRHLTRLRRWTGSDSLDVNHPNPNSEITVTSQGSVEHPDGTSFVERLLKEESMQRTFEKGFLVTVHAFLGTVRDA
HVNLAAQLKEMNLPTFENELVPLISFPTKLAQASLRLRLDYVGKLEPDVDVLIIDQMTEDLKLNIGLACTLKRQY
QAFLAPDPDGNWALPPCISEDYDSTILEALTQFFKLLHWKLKSGVKGIYLKETDVLEAQWATYNDVSLTAGGSSL
VAEHLCSLTNKLMVRVTNYFDTQVRVPLSDKQSGNQSNGGPVTSSAPSSNSGKASSDATTSGQRLTDGQIINWYS
KILDGVRLRYRKLQRFARVLTQRFSNSAEYSIDDVAMDHLINLLVLTDHFLVYTQTMEEESIYIVASGSLYDRPD
LIRRILVEAFHVDEIASEEGGVRAVSADYLLHDSDEVGYLLVLTPHTPFIWHGRVMFVPVPNISLDLKEGRIRLI
ADGSYGRLNYAKQVFSDCMELVEGDDDNSGVEPLYLTCLVETQAHLPSVNRELRKIVRATNRLAESIVDSVHHVK
RSLRGASNSQDLLGNWYLFASEHGAHAHRYMEKSSLARFNRLLVKLAVSWASFICDDCDPTDRKTFKWTVNSLEF
IMQRTKRNILHIPDDQFELLKAKVGHCMSLLINHFDILGARSNMEAKMEKEKQEMLLRSKVVDSRLDEEDFPPCP
SGEEGSWYLDGSTRKFWDRVSKALQELEERTVVIPQYRGKVLDDEKLEDRSLVFLASSSSNISIRWQQGRFIGAG
AFGSVYLAMNLDSGSLMAVKEIKFQELSGLPNLYAQIKDELSVMEMLHHPNVVEYYGIEVHRDKVYIFEEYCQGG
SLAALLEHGRIEDERILQLYTVQMLDGLSYLHSQGIVHRDIKPDNILLDQLGRIKFVDFGAAKILAKNQHTLQRS
RRSTDAAFNAANGIGVMSNGLTGTPMYMSPEMIKNDRRGRHGATDIWSLGCVILQCATGRKPWSNLDNEWAIMFH
IGVSTQHPPLPEPGQLSPLGIDFIKQCLTIDPTFRPSAKELMDHPWMLDLQAALEDDGLEIATSPRPDTQSECSG
DSSTTYGSLAVPTETNSNGS
Length 1370

Coding

Sequence id CopciAB_474858.T0
Sequence >CopciAB_474858.T0
ATGCGCAAGCACAACCCAACCCTCTACACCCTCTCCGAACGCGACAGTGACGACATAAACGACGACGACGAGAAC
GTTTCCTGGCAACATGAAGAACACGACCCAGTTCCAGGCCCTTCCAATGTATCGGCCTCGTCCAACCTGAACAGA
AGTGTGCGATCTTCACTCAAAGGACGCCAGTCATCTCATTCGAAGGTACCAACGAACGTCAATACCAAGCAAGAC
ATTTACTCTCAATTCGTCAAGAGATACCGTACGAAGGAACATCGCTACGTTGACGAGATGGAGGATTTCCGGAGC
GATCCAGACAGCCACTACTATCACAAAGGACTCGGCCAGCTCGTCGACGTTGGGGATGCCAGTGACGACGAAGAT
TATATGTCTTTGATTGGAGGAAACGACGGTATCATCGAGGGTTCAATGGACGAGATGGCTCATCCAGTGACGGAG
AAGGACCAACGGCGGTTGGAGTGGCAAAGCTTGCTTAGCTCCGTGCTCTCAGGGGAGGTTCTGAAGTCGGAGAAA
ACGCGCTTAGCCGTCGCCTTGGACTCATTTGGGGACGAACAGAACAACTTCAATATGAACATATGGTTGGGGATT
CGCGCCAAATTCCATGGCCGCAGTATAGAGGAGGAGAAGCGGAAGCTCGACGAAAAGAGAATACGGATAGTAGAC
GGTGTCATCGACGAAATCATGAATTTCCGCGTCGTTCAAGACGAAGCAGCACCGACAAACTCAGCCATGAAGCAA
GTAACGAACATACTCCATCGACTGGATGTGGCCCAATCACTGTACCCCCATCTCAAAGCATTCTACCTCGACAAG
CCCAAGGCACAAGAGGGACCATTCCAAGCGCGCTGCGACGCTCTCAACACCTGGTTCACTATCCTCTCTTCCCTC
AAACGTCATCTCACTCGACTTCGTCGATGGACGGGGAGCGATTCCCTGGACGTCAATCATCCCAACCCGAACTCT
GAGATAACGGTCACCTCTCAGGGATCCGTAGAACATCCGGACGGGACCTCTTTTGTCGAGCGATTGTTGAAGGAG
GAGTCCATGCAGCGCACCTTCGAGAAAGGTTTCCTGGTCACAGTCCATGCTTTTTTGGGCACTGTTCGCGACGCC
CACGTCAACCTTGCTGCTCAACTAAAGGAGATGAACCTGCCGACATTTGAAAACGAGTTGGTGCCCTTAATCTCC
TTTCCAACGAAGTTGGCGCAAGCTAGCCTTCGGCTGCGGCTCGATTATGTCGGTAAACTAGAGCCGGACGTCGAC
GTCCTCATCATTGACCAAATGACAGAGGACTTGAAACTCAACATCGGCCTTGCCTGTACTTTGAAACGACAATAT
CAAGCCTTCCTGGCCCCGGATCCAGACGGAAATTGGGCATTACCTCCATGTATCAGCGAGGATTACGACAGCACC
ATTTTGGAAGCATTGACCCAGTTTTTTAAGCTGCTACATTGGAAGCTTAAGAGCGGGGTCAAAGGGATATACCTG
AAGGAGACCGACGTCCTCGAAGCGCAATGGGCCACCTATAACGATGTGAGTCTTACCGCGGGTGGTTCAAGTCTG
GTCGCGGAACACCTATGCTCATTAACCAACAAACTGATGGTTCGAGTCACGAATTACTTCGACACGCAAGTCCGT
GTACCGCTGTCAGATAAGCAGTCTGGAAACCAGTCAAACGGTGGCCCCGTTACATCCAGTGCCCCCTCGAGCAAC
AGCGGAAAAGCATCATCGGACGCTACCACTTCCGGCCAAAGGTTGACAGATGGTCAGATCATCAATTGGTACAGT
AAGATCCTTGACGGTGTCCGTCTTCGCTACAGGAAATTGCAGCGCTTCGCCAGGGTTCTTACACAACGCTTCAGT
AACTCAGCGGAGTACAGCATCGACGATGTCGCGATGGACCATTTGATAAATCTCCTTGTCCTAACCGACCACTTC
CTTGTTTACACCCAAACGATGGAAGAGGAGAGCATCTACATCGTTGCCTCAGGCTCCCTGTACGACCGGCCCGAC
CTCATTCGAAGGATCCTCGTGGAAGCGTTCCACGTGGACGAAATCGCCAGCGAGGAGGGAGGGGTACGGGCTGTC
AGCGCAGACTACCTCCTACACGATTCCGATGAAGTCGGCTATCTTCTCGTTCTCACCCCCCATACGCCGTTCATT
TGGCATGGCAGGGTCATGTTTGTCCCTGTCCCCAATATTTCCCTAGATCTGAAAGAAGGTCGAATCCGCCTCATT
GCCGACGGTTCATACGGTCGCCTAAACTACGCGAAGCAGGTGTTTAGTGATTGCATGGAGTTGGTCGAGGGAGAC
GATGACAACAGCGGGGTTGAGCCCTTGTACCTGACATGCTTGGTGGAGACTCAGGCACACCTTCCTTCCGTCAAT
CGGGAATTGCGAAAGATCGTTCGAGCAACCAATCGCCTCGCGGAATCCATCGTCGACTCGGTACACCATGTCAAG
AGGTCACTTCGCGGCGCTTCAAACTCGCAAGACCTTCTAGGCAATTGGTATCTGTTCGCATCAGAGCATGGTGCC
CATGCCCATAGGTACATGGAGAAATCGTCCCTCGCTCGTTTCAACCGCCTTTTGGTGAAACTCGCAGTTTCATGG
GCTTCGTTCATTTGCGATGACTGCGACCCCACAGACCGGAAGACTTTCAAATGGACGGTGAATTCCTTGGAGTTC
ATCATGCAGCGGACCAAGCGGAACATTCTCCATATCCCCGACGACCAGTTCGAGTTGCTCAAGGCGAAGGTTGGT
CACTGTATGTCACTGTTGATAAACCATTTCGACATCCTTGGAGCCCGTTCCAACATGGAGGCGAAGATGGAGAAA
GAGAAGCAGGAGATGCTACTTCGATCGAAGGTCGTCGACTCTCGCTTGGATGAAGAAGACTTCCCGCCTTGCCCT
AGCGGTGAAGAAGGCAGTTGGTACCTGGATGGCAGCACGCGGAAATTTTGGGACAGGGTATCAAAGGCGTTGCAA
GAGCTCGAGGAACGAACGGTTGTTATCCCGCAGTACAGGGGCAAGGTCCTTGACGACGAGAAGCTCGAAGACCGA
TCGCTTGTCTTCCTAGCCTCCTCCAGTTCCAACATCTCTATTCGGTGGCAACAAGGTCGGTTCATCGGTGCGGGC
GCTTTTGGCTCTGTATACCTGGCCATGAACCTCGACTCCGGCTCACTCATGGCCGTCAAAGAGATCAAGTTCCAG
GAACTATCTGGTCTCCCCAACCTTTACGCTCAGATCAAGGACGAGCTTAGCGTGATGGAAATGCTGCATCACCCC
AATGTTGTCGAATATTACGGGATCGAAGTCCATCGAGACAAGGTCTACATCTTCGAGGAGTATTGCCAAGGGGGA
AGTTTGGCCGCGTTGTTGGAGCATGGACGCATCGAGGATGAGCGAATTCTCCAGCTGTACACAGTGCAGATGTTG
GACGGTTTGTCGTACCTGCATTCACAAGGGATCGTGCATCGTGATATCAAACCCGACAACATCCTGCTGGACCAG
CTGGGCCGGATCAAATTTGTCGATTTCGGAGCTGCAAAGATTCTTGCAAAGAACCAGCACACTTTGCAACGATCT
CGAAGGAGCACGGACGCTGCCTTCAACGCTGCGAATGGAATTGGCGTGATGAGCAATGGGCTGACCGGCACTCCG
ATGTATATGTCGCCAGAGATGATCAAGAACGACAGGCGAGGGCGTCACGGTGCTACAGATATCTGGTCACTTGGT
TGTGTCATTCTGCAGTGTGCTACCGGAAGGAAGCCGTGGAGTAACCTCGACAACGAATGGGCTATCATGTTCCAC
ATTGGTGTTTCCACTCAACATCCTCCATTGCCAGAGCCGGGACAGTTAAGCCCTTTGGGAATCGACTTCATCAAG
CAATGTTTGACCATCGACCCCACCTTCCGTCCAAGCGCGAAGGAGTTGATGGACCATCCATGGATGCTTGATCTC
CAGGCAGCGCTAGAAGACGATGGTTTGGAGATCGCGACGAGTCCTCGACCAGACACACAATCAGAGTGCTCCGGC
GACTCAAGTACTACGTATGGATCTTTGGCAGTTCCAACAGAAACAAACAGCAATGGCTCATGA
Length 4113

Transcript

Sequence id CopciAB_474858.T0
Sequence >CopciAB_474858.T0
ACGTCTTCTTCATCGTCCCTCGATGAGGCCACCCTGATCACAATGCGCAAGCACAACCCAACCCTCTACACCCTC
TCCGAACGCGACAGTGACGACATAAACGACGACGACGAGAACGTTTCCTGGCAACATGAAGAACACGACCCAGTT
CCAGGCCCTTCCAATGTATCGGCCTCGTCCAACCTGAACAGAAGTGTGCGATCTTCACTCAAAGGACGCCAGTCA
TCTCATTCGAAGGTACCAACGAACGTCAATACCAAGCAAGACATTTACTCTCAATTCGTCAAGAGATACCGTACG
AAGGAACATCGCTACGTTGACGAGATGGAGGATTTCCGGAGCGATCCAGACAGCCACTACTATCACAAAGGACTC
GGCCAGCTCGTCGACGTTGGGGATGCCAGTGACGACGAAGATTATATGTCTTTGATTGGAGGAAACGACGGTATC
ATCGAGGGTTCAATGGACGAGATGGCTCATCCAGTGACGGAGAAGGACCAACGGCGGTTGGAGTGGCAAAGCTTG
CTTAGCTCCGTGCTCTCAGGGGAGGTTCTGAAGTCGGAGAAAACGCGCTTAGCCGTCGCCTTGGACTCATTTGGG
GACGAACAGAACAACTTCAATATGAACATATGGTTGGGGATTCGCGCCAAATTCCATGGCCGCAGTATAGAGGAG
GAGAAGCGGAAGCTCGACGAAAAGAGAATACGGATAGTAGACGGTGTCATCGACGAAATCATGAATTTCCGCGTC
GTTCAAGACGAAGCAGCACCGACAAACTCAGCCATGAAGCAAGTAACGAACATACTCCATCGACTGGATGTGGCC
CAATCACTGTACCCCCATCTCAAAGCATTCTACCTCGACAAGCCCAAGGCACAAGAGGGACCATTCCAAGCGCGC
TGCGACGCTCTCAACACCTGGTTCACTATCCTCTCTTCCCTCAAACGTCATCTCACTCGACTTCGTCGATGGACG
GGGAGCGATTCCCTGGACGTCAATCATCCCAACCCGAACTCTGAGATAACGGTCACCTCTCAGGGATCCGTAGAA
CATCCGGACGGGACCTCTTTTGTCGAGCGATTGTTGAAGGAGGAGTCCATGCAGCGCACCTTCGAGAAAGGTTTC
CTGGTCACAGTCCATGCTTTTTTGGGCACTGTTCGCGACGCCCACGTCAACCTTGCTGCTCAACTAAAGGAGATG
AACCTGCCGACATTTGAAAACGAGTTGGTGCCCTTAATCTCCTTTCCAACGAAGTTGGCGCAAGCTAGCCTTCGG
CTGCGGCTCGATTATGTCGGTAAACTAGAGCCGGACGTCGACGTCCTCATCATTGACCAAATGACAGAGGACTTG
AAACTCAACATCGGCCTTGCCTGTACTTTGAAACGACAATATCAAGCCTTCCTGGCCCCGGATCCAGACGGAAAT
TGGGCATTACCTCCATGTATCAGCGAGGATTACGACAGCACCATTTTGGAAGCATTGACCCAGTTTTTTAAGCTG
CTACATTGGAAGCTTAAGAGCGGGGTCAAAGGGATATACCTGAAGGAGACCGACGTCCTCGAAGCGCAATGGGCC
ACCTATAACGATGTGAGTCTTACCGCGGGTGGTTCAAGTCTGGTCGCGGAACACCTATGCTCATTAACCAACAAA
CTGATGGTTCGAGTCACGAATTACTTCGACACGCAAGTCCGTGTACCGCTGTCAGATAAGCAGTCTGGAAACCAG
TCAAACGGTGGCCCCGTTACATCCAGTGCCCCCTCGAGCAACAGCGGAAAAGCATCATCGGACGCTACCACTTCC
GGCCAAAGGTTGACAGATGGTCAGATCATCAATTGGTACAGTAAGATCCTTGACGGTGTCCGTCTTCGCTACAGG
AAATTGCAGCGCTTCGCCAGGGTTCTTACACAACGCTTCAGTAACTCAGCGGAGTACAGCATCGACGATGTCGCG
ATGGACCATTTGATAAATCTCCTTGTCCTAACCGACCACTTCCTTGTTTACACCCAAACGATGGAAGAGGAGAGC
ATCTACATCGTTGCCTCAGGCTCCCTGTACGACCGGCCCGACCTCATTCGAAGGATCCTCGTGGAAGCGTTCCAC
GTGGACGAAATCGCCAGCGAGGAGGGAGGGGTACGGGCTGTCAGCGCAGACTACCTCCTACACGATTCCGATGAA
GTCGGCTATCTTCTCGTTCTCACCCCCCATACGCCGTTCATTTGGCATGGCAGGGTCATGTTTGTCCCTGTCCCC
AATATTTCCCTAGATCTGAAAGAAGGTCGAATCCGCCTCATTGCCGACGGTTCATACGGTCGCCTAAACTACGCG
AAGCAGGTGTTTAGTGATTGCATGGAGTTGGTCGAGGGAGACGATGACAACAGCGGGGTTGAGCCCTTGTACCTG
ACATGCTTGGTGGAGACTCAGGCACACCTTCCTTCCGTCAATCGGGAATTGCGAAAGATCGTTCGAGCAACCAAT
CGCCTCGCGGAATCCATCGTCGACTCGGTACACCATGTCAAGAGGTCACTTCGCGGCGCTTCAAACTCGCAAGAC
CTTCTAGGCAATTGGTATCTGTTCGCATCAGAGCATGGTGCCCATGCCCATAGGTACATGGAGAAATCGTCCCTC
GCTCGTTTCAACCGCCTTTTGGTGAAACTCGCAGTTTCATGGGCTTCGTTCATTTGCGATGACTGCGACCCCACA
GACCGGAAGACTTTCAAATGGACGGTGAATTCCTTGGAGTTCATCATGCAGCGGACCAAGCGGAACATTCTCCAT
ATCCCCGACGACCAGTTCGAGTTGCTCAAGGCGAAGGTTGGTCACTGTATGTCACTGTTGATAAACCATTTCGAC
ATCCTTGGAGCCCGTTCCAACATGGAGGCGAAGATGGAGAAAGAGAAGCAGGAGATGCTACTTCGATCGAAGGTC
GTCGACTCTCGCTTGGATGAAGAAGACTTCCCGCCTTGCCCTAGCGGTGAAGAAGGCAGTTGGTACCTGGATGGC
AGCACGCGGAAATTTTGGGACAGGGTATCAAAGGCGTTGCAAGAGCTCGAGGAACGAACGGTTGTTATCCCGCAG
TACAGGGGCAAGGTCCTTGACGACGAGAAGCTCGAAGACCGATCGCTTGTCTTCCTAGCCTCCTCCAGTTCCAAC
ATCTCTATTCGGTGGCAACAAGGTCGGTTCATCGGTGCGGGCGCTTTTGGCTCTGTATACCTGGCCATGAACCTC
GACTCCGGCTCACTCATGGCCGTCAAAGAGATCAAGTTCCAGGAACTATCTGGTCTCCCCAACCTTTACGCTCAG
ATCAAGGACGAGCTTAGCGTGATGGAAATGCTGCATCACCCCAATGTTGTCGAATATTACGGGATCGAAGTCCAT
CGAGACAAGGTCTACATCTTCGAGGAGTATTGCCAAGGGGGAAGTTTGGCCGCGTTGTTGGAGCATGGACGCATC
GAGGATGAGCGAATTCTCCAGCTGTACACAGTGCAGATGTTGGACGGTTTGTCGTACCTGCATTCACAAGGGATC
GTGCATCGTGATATCAAACCCGACAACATCCTGCTGGACCAGCTGGGCCGGATCAAATTTGTCGATTTCGGAGCT
GCAAAGATTCTTGCAAAGAACCAGCACACTTTGCAACGATCTCGAAGGAGCACGGACGCTGCCTTCAACGCTGCG
AATGGAATTGGCGTGATGAGCAATGGGCTGACCGGCACTCCGATGTATATGTCGCCAGAGATGATCAAGAACGAC
AGGCGAGGGCGTCACGGTGCTACAGATATCTGGTCACTTGGTTGTGTCATTCTGCAGTGTGCTACCGGAAGGAAG
CCGTGGAGTAACCTCGACAACGAATGGGCTATCATGTTCCACATTGGTGTTTCCACTCAACATCCTCCATTGCCA
GAGCCGGGACAGTTAAGCCCTTTGGGAATCGACTTCATCAAGCAATGTTTGACCATCGACCCCACCTTCCGTCCA
AGCGCGAAGGAGTTGATGGACCATCCATGGATGCTTGATCTCCAGGCAGCGCTAGAAGACGATGGTTTGGAGATC
GCGACGAGTCCTCGACCAGACACACAATCAGAGTGCTCCGGCGACTCAAGTACTACGTATGGATCTTTGGCAGTT
CCAACAGAAACAAACAGCAATGGCTCATGATGCTTATGACTTTATGTTCTTCACGATTCGGCCCCTTCGCTCTAT
GCGACCATGTATTGTACAACAGCTGCTTTACCCCCTGTATTGAAATGGATACTGAATAATTCAAATCACGGTACG
AATAC
Length 4280

Gene

Sequence id CopciAB_474858.T0
Sequence >CopciAB_474858.T0
ACGTCTTCTTCATCGTCCCTCGATGAGGCCACCCTGATCACAATGCGCAAGCACAACCCAACCCTCTACACCCTC
TCCGAACGCGACAGTGACGACATAAACGACGACGACGAGAACGTTTCCTGGCAACATGAAGAACACGACCCAGTT
CCAGGCCCTTCCAATGTATCGGCCTCGTCCAACCTGAACAGAAGTGTGCGATCTTCACTCAAAGGACGCCAGTCA
TCTCATTCGAAGGTACCAACGAACGTCAATACCAAGCAAGACATTTACTCTCAATTCGTCAAGAGATACCGTACG
AAGGAACATCGCTACGTTGACGAGATGGAGGATTTCCGGAGCGATCCAGACAGCCACTACTATCACAAAGGACTC
GGCCAGCTCGTCGACGTTGGGGATGCCAGTGACGACGAAGATTATATGTCTTTGATTGGAGGAAACGACGGTATC
ATCGAGGGTTCAATGGACGAGATGGCTCATCCAGTGACGGAGAAGGACCAACGGCGGTTGGAGTGGCAAAGCTTG
CTTAGCTCCGTGCTCTCAGGGGAGGTTCTGAAGTCGGAGAAAACGCGCTTAGCCGTCGCCTTGGACTCATTTGGG
GACGAACAGAACAACTTCAATATGAACATATGGTTGGGGATTCGCGCCAAATTCCATGGCCGCAGTATAGAGGAG
GAGAAGCGGAAGCTCGACGAAAAGAGAATACGGATAGTAGACGGTGTCATCGACGAAATCATGAATTTCCGCGTC
GTTCAAGACGAAGCAGCACCGACAAACTCAGCCATGAAGCAAGTAACGAACATACTCCATCGACTGGATGTGGCC
CAATCACTGTACCCCCATCTCAAAGCATTCTACCTCGACAAGCCCAAGGCACAAGAGGGACCATTCCAAGCGCGC
TGCGACGCTCTCAACACCTGGTTCACTATCCTCTCTTCCCTCAAACGTCATCTCACTCGACTTCGTCGATGGACG
GGGAGCGATTCCCTGGACGTCAATCATCCCAACCCGAACTCTGAGATAACGGTCACCTCTCAGGGATCCGTAGAA
CATCCGGACGGGACCTCTTTTGTCGAGCGATTGTTGAAGGAGGAGTCCATGCAGCGCACCTTCGAGAAAGGTTTC
CTGGTCACAGTCCATGCTTTTTTGGGCACTGTTCGCGACGCCCACGTCAACCTTGCTGCTCAACTAAAGGAGATG
AACCTGCCGACATTTGAAAACGAGTTGGTGCCCTTAATCTCCTTTCCAACGAAGTTGGCGCAAGCTAGCCTTCGG
CTGCGGCTCGATTATGTCGGTAAACTAGAGCCGGACGTCGACGTCCTCATCATTGACCAAATGACAGAGGACTTG
AAACTCAACATCGGCCTTGCCTGTACTTTGAAACGACAATATCAAGCCTTCCTGGCCCCGGATCCAGACGGAAAT
TGGGCATTACCTCCATGTATCAGCGAGGATTACGACAGCACCATTTTGGAAGCATTGACCCAGTTTTTTAAGCTG
CTACATTGGAAGCTTAAGAGCGGGGTCAAAGGGATATACCTGAAGGAGACCGACGTCCTCGAAGCGCAATGGGCC
ACCTATAACGATGTGAGTCTTACCGCGGGTGGTTCAAGTCTGGTCGCGGAACACCTATGGTGAGGTCCAAATTTA
TTAATACCTCCATTGCTAACTCACAAAGATCCAGCTCATTAACCAACAAACTGATGGTTCGAGTCACGAATTACT
TCGACACGCAAGTCCGTGTACCGCTGTCAGATAAGCAGTCTGGAAACCAGTCAAACGGTGGCCCCGTTACATCCA
GTGCCCCCTCGAGCAACAGCGGAAAAGCATCATCGGACGCTACCACTTCCGGCCAAAGGTTGACAGATGGTCAGA
TCATCAATTGGTACAGTAAGATCCTTGACGGTGTCCGTCTTCGCTACAGGAAATTGCAGCGCTTCGCCAGGTAAG
AAGCAACGTTGCCAGGCCTTTTTTCGTCTCGTTAACAGCCCACAGGGTTCTTACACAACGCTTCAGTAACTCAGC
GGAGTACAGCATCGACGATGTCGCGATGGACCATTTGATAAATCTCCTTGTCCTAACCGACCACTTCCTTGTTTA
CACCCAAACGATGGAAGAGGAGAGCATCTACATCGTTGCCTCAGGCTCCCTGTACGACCGGCCCGACCTCATTCG
AAGGATCCTCGTGGAAGCGTTCCACGTGGACGAAATCGCCAGCGAGGAGGGAGGGGTACGGGCTGTCAGCGCAGA
CTACCTCCTACACGATTCCGATGAAGTCGGCTATCTTCTCGTTCTCACCCCCCATACGCCGTTCATTTGGCATGG
CAGGGTCATGTTTGTCCCTGTCCCCAATATTTCCCTAGATCTGAAAGAAGGTCGAATCCGCCTCATTGCCGACGG
TTCATACGGTCGCCTAAACTACGCGAAGCAGGTGTTTAGTGATTGCATGGAGTTGGTCGAGGGAGACGATGACAA
CAGCGGGGTTGAGCCCTTGTACCTGACATGCTTGGTGGAGACTCAGGCACACCTTCCTTCCGTCAATCGGGAATT
GCGAAAGATCGTTCGAGCAACCAATCGCCTCGCGGAATCCATCGTCGACTCGGTACACCATGTCAAGAGGTCACT
TCGCGGCGCTTCAAACTCGCAAGACCTTCTAGGCAATTGGTATCTGTTCGCATCAGAGCATGGTGCCCATGCCCA
TAGGTACATGGAGAAATCGTCCCTCGCTCGTTTCAACCGCCTTTTGGTGAAACTCGCAGTTTCATGGGCTTCGTT
CATTTGCGATGACTGCGACCCCACAGACCGGAAGACTTTCAAATGGACGGTGAATTCCTTGGAGTTCATCATGCA
GCGGACCAAGCGGAACATTCTCCATATCCCCGACGACCAGTTCGAGTTGCTCAAGGCGAAGGTTGGTCACTGTAT
GTCACTGTTGATAAACCATTTCGACATCCTTGGAGCCCGTTCCAACATGGAGGCGAAGATGGAGAAAGAGAAGCA
GGAGATGCTACTTCGATCGAAGGTCGTCGACTCTCGCTTGGATGAAGAAGACTTCCCGCCTTGCCCTAGCGGTGA
AGAAGGCAGTTGGTACCTGGATGGCAGCACGCGGAAATTTTGGGACAGGGTATCAAAGGCGTTGCAAGAGCTCGA
GGAACGAACGGTTGTTATCCCGCAGTACAGGGGCAAGGTCCTTGACGACGAGAAGCTCGAAGACCGATCGCTTGT
CTTCCTAGCCTCCTCCAGTTCCAACATCTCTATTCGGTGGCAACAAGGTCGGTTCATCGGTGCGGGCGCTTTTGG
CTCTGTATACCTGGCCATGAACCTCGACTCCGGCTCACTCATGGCCGTCAAAGAGATCAAGTTCCAGGAACTATC
TGGTCTCCCCAACCTTTACGCTCAGATCAAGGACGAGCTTAGCGTGATGGAAATGCTGCATCACCCCAATGTTGT
CGAATATTACGGGATCGAAGTCCATCGAGACAAGGTCTACATCTTCGAGGAGTATTGCCAAGGGGGAAGTTTGGC
CGCGTTGTTGGAGCATGGACGCATCGAGGATGAGCGAATTCTCCAGCTGTACACAGTGCAGATGTTGGACGGTTT
GTCGTACCTGCATTCACAAGGGATCGTGCATCGTGATATCAAACCCGACAGTGAGTACTACCTTCGCCATCCTCG
ACGGGCTCTTTTAACCGTTGTTGCAGACATCCTGCTGGACCAGCTGGGCCGGATCAAATTTGTCGATTTCGGAGC
TGCAAAGATTCTTGCAAAGAACCAGCACACTTTGCAACGATCTCGAAGGAGCACGGACGCTGCCTTCAACGCTGC
GAATGGAATTGGCGTGATGAGCAATGGGCTGACCGGCACTCCGATGTATATGTCGCCAGAGATGATCAAGAACGA
CAGGCGAGGGCGTCACGGTGCTACAGATATCTGGTCACTTGGTTGTGTCATTCTGCAGTGTGCTACCGGAAGGAA
GCCGTGGAGTAACCTCGACAACGAATGGTAACAGTCAATCCCTCCCCTTCTAAGCCAATTACTCACGTCTCCCTC
AGGGCTATCATGTTCCACATTGGTGTTTCCACTCAACATCCTCCATTGCCAGAGCCGGGACAGTTAAGCCCTTTG
GGAATCGACTTCATCAAGCAATGTTTGACCATCGACCCCACCTTCCGTCCAAGCGCGAAGGAGTTGATGGACCAT
CCATGGATGCTTGATCTCCAGGCAGCGCTAGAAGACGATGGTTTGGAGATCGCGACGAGTCCTCGACCAGACACA
CAATCAGAGTGCTCCGGCGACTCAAGTACTACGTATGGATCTTTGGCAGTTCCAACAGAAACAAACAGCAATGGC
TCATGATGCTTATGACTTTATGTTCTTCACGATTCGGCCCCTTCGCTCTATGCGACCATGTATTGTACAACAGCT
GCTTTACCCCCTGTATTGAAATGGATACTGAATAATTCAAATCACGGTACGAATAC
Length 4481