CopciAB_482772
Coprinopsis cinerea A43mutB43mut pab1-1 #326

General data

Systematic name CopciAB_482772 Strain Coprinopsis cinerea Okayama 7
Standard name - Synonyms 482772
Uniprot id Functional description protein kinase activity
Location scaffold_13:357776..359298 Strand +
Gene length (nt) 1523 Transcript length (nt) 1205
CDS length (nt) 972 Protein length (aa) 323

Reciprocal best hits in model fungi

Strain name Gene / Protein name

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
Hypsizygus marmoreus strain 51987-8 Hypma_RDB21847 31.3 3.382E-38 146

Expression

Name Summary Attribution Assay type
Carbon metabolism Transcriptional changes along alternative morphogenetic paths of C. cinerea Xie et al. 2020 RNA-Seq
Sample Mean cpm SD cpm Se of mean
sclerotia 6.1174 1.3835 0.7988
oidia 19.2173 4.5915 2.6509
vegetative_mycelium 20.5252 6.7454 3.8945
primordia 11.5378 1.3363 0.7715
hyphal_knot 23.6669 7.4662 4.3106
young_fruiting_body 21.3993 3.6227 2.0916
Complex carbon sources 1 (long incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control - glucose 4.7673 1.9549 1.1286
Wheat bran 10.4401 2.6529 1.5316
Horse manure 6.2622 3.845 2.2199
Oak leaves 12.7819 8.8177 5.0909
Hay 14.3417 6.5423 3.7772
Corn stalk 10.8183 4.0379 2.3313
Pectine 11.924 4.052 2.3394
Microcrystalline cellulose 0.5022 0.264 0.1524
Xylose 7.5915 4.1771 2.4116
Cellobiose 3.103 1.4861 0.858
Lignin 0.6351 0.2025 0.1169
Apple peels 7.0686 1.3279 0.7667
Coprinopsis challenged with bacteria Transcriptional response to Bacillus subtilis and Escherichia coli. Kombrink et al. 2018 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control 12.3622 0.5313 0.3068
Bsubtilis 17.0176 4.966 2.8671
Ecoli 11.2669 0.7374 0.4257
Early development 1 Time series expression profiling of basidiospore and oidium germination Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
BS 0h 0.3215 0.2804 0.1619
BS 4h 0.0689 0.0636 0.0367
BS 8h 0.0245 0.0424 0.0245
BS 12h 0.0352 0.0609 0.0352
Oidia 0 h 0.7183 0.2993 0.1728
Oidia 18 h 1.4631 1.2107 0.699
Sclerotia 0.2082 0.3607 0.2082
Early development 2 Time series expression profiling of mycelial growth, light induction and fruiting body initiation. Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
DM 12h 133.6729 6.8772 3.9705
DM 36h 70.5667 9.6689 5.5823
DM 60h 51.3601 2.395 1.3827
DM 84h 11.0219 2.0046 1.1573
DM 108h 7.1407 0.978 0.5646
DM 132h 8.3284 3.4068 1.9669
DM 156hAE 3.3838 0.9187 0.5304
ELI1hAE 19.2149 9.9312 5.7338
ELI2hAE 35.987 6.6844 3.8592
LI2hAE 28.5996 8.97 5.1789
LI6hAE 49.6521 5.0168 2.8965
LI12hAE 9.9707 3.3691 1.9451
LI18hAE 12.7479 9.0228 5.2093
LI 24hAE 6.9978 3.3988 1.9623
DM 156hAM 9.4153 2.0968 1.2106
ELI1hAM 12.4316 3.538 2.0427
ELI2hAM 16.4266 5.1427 2.9692
LI2hAM 19.8469 4.4288 2.557
LI6hAM 34.2717 4.4128 2.5478
LI12hAM 7.7112 2.6114 1.5077
LI18hAM 10.1767 2.1737 1.255
LI 24hAM 0.6171 0.6293 0.3633
LI 24hHK 22.7419 17.5228 10.1168
L/D 6h 21.1167 5.2452 3.0283
L/D 12h 49.7353 55.2358 31.8904
L/D 18h 15.1902 5.6136 3.241
L/D 24h 14.5861 11.9856 6.9199
Fruiting body development RNA-Seq analysis of fruiting body development Krizsan et al. 2019 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Vegetative mycelium 2.021 0.6143 0.3547
Hyphal knots 57.0918 55.3004 31.9277
Primordium 1 29.3311 12.313 7.1089
Primordium 2 32.2077 13.9084 8.03
Young Fruiting body cap 51.3966 20.2915 11.7153
Younf fruiting body gill 13.783 13.3244 7.6928
Young fruiting body stipe 2.0736 0.6154 0.3553
Mature fruiting body cap_gill 136.4421 69.1385 39.9172
Mature fruiting body stipe 0.2354 0.1648 0.0951
Nitrogen sources (12h incubation) Expression profiling on diverse nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Complete medium - control 17.4636 6.4313 3.7131
NH4NO3 15.8533 14.7451 8.5131
Proline 24.9662 22.8171 13.1734
Tryptophan 40.8617 31.8895 18.4114
Isoleucin 14.0183 4.8366 2.7924
Arginine 33.3093 8.1625 4.7126
Metionine 26.1171 6.3848 3.6862
NaNO3 43.4166 7.623 4.4011
Plant biomass (12h incubation) Expression profiling on diverse plant biomasses as carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 17.4636 6.4313 3.7131
Citrus peel 69.473 19.1214 11.0398
Poplar leaves 4.1689 2.7205 1.5707
Typha leaves 16.4967 6.6851 3.8597
Overwintered Salix leaves 22.24 2.0418 1.1788
Reed flowering 35.4887 13.1522 7.5934
Tigernut 12.5877 5.1296 2.9616
Energy cane 9.6346 4.3924 2.5359
Guar gum 9.633 7.0738 4.0841
Apple peels 26.7066 8.1113 4.6831
Cellobiose 26.3362 6.6047 3.8132
Corn stalk 7.6475 2.3232 1.3413
Horse manure 6.3042 1.1829 0.683
Lignin 22.3932 14.6616 8.4649
Microcrystalline cellulose 33.4815 13.2195 7.6323
Oak leaves 10.5485 1.7771 1.026
Pectin esterified 29.6761 15.6843 9.0553
Poplar sawdust 9.0461 4.206 2.4283
Wheat bran 12.2554 3.7335 2.1556
Chlamydomonas reinhardtii 11.7885 0.6823 0.394
Vertatryl alcohol 69.0438 42.9004 24.7686
Furfural 50.6718 16.2687 9.3927
Autoclaved mycelium 16.0417 3.742 2.1604
Simple and complex carbon and nitrogen sources Expression profiling on diverse complex carbon and nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 52.495 10.3106 5.9529
Ribose 27.4429 10.8187 6.2462
Mannose 36.7632 6.2872 4.4457
Fructose 38.2907 4.1659 2.4052
Arabinose 31.458 4.9467 2.856
Xylose 29.809 9.6763 5.5866
Galacturonic acid 35.898 11.1563 6.4411
Rhamnogalacturonan 39.8915 6.8485 3.954
Pectin esterified 39.2614 4.5096 2.6036
Polygalacturonic acid 40.6843 5.9907 3.4588
Sodium acetate 41.1736 7.4484 4.3003
No nitrogen 34.192 3.4889 2.0143
BSA 24.0385 8.0795 4.6647
Glutamine 19.4506 6.1057 3.5251
No phosphate 58.6101 2.325 1.3424
No carbon 15.001 0.8669 0.613
No sulphur 24.2926 7.1472 4.1265
Simple and complex carbon sources (12h incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 17.4636 6.4313 3.7131
Amylose 5.3022 1.4761 0.8522
Fucose 12.9892 1.212 0.6997
Galactose 7.0423 0.7262 0.4193
Lactose 8.0783 3.2647 1.8849
Maltose 6.6816 4.2574 2.458
Mannitol 6.0237 4.0521 2.3395
Rhamnose 7.4673 3.1908 1.8422
Sorbitol 8.473 3.0974 1.7883
Trehalose 6.8586 3.4326 1.9818
Glycerol 9.3376 5.758 3.3244
Glucuronic acid 7.2308 3.1286 1.8063
Arabinan 15.5699 12.1874 7.0364
Galactan 18.678 3.4899 2.0149
Galactomannan 13.3521 6.779 3.9138
Glucan 14.5923 3.6056 2.0817
Xylan 10.9603 2.924 1.6882
Xyloglucan 9.1081 2.3076 1.3323
Arabinogalactan 7.0051 1.8629 1.0755
Pectin 6.32 0.5352 0.309
Rhamnogalacturonan 4.0883 0.7029 0.4058
Polygalacturonic acid 8.8608 0.5066 0.2925
Mannan 7.9324 2.2056 1.2734
Amylopectin 11.8016 4.6494 2.6843
Inulin 9.8021 2.1481 1.2402
BSA 30.8163 1.5374 0.8876
Starvation induced by water agar transfer Expression profiling on starvation induced by transfer to water agar Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Control 51.3601 2.395 1.3827
2h WAT 31.6793 6.6206 3.8224
4h WAT 49.2865 5.2574 3.0354
8h WAT 13.0211 1.5789 0.9116
16h WAT 9.6475 2.5859 1.493
24h WAT 8.8818 2.5429 1.4681
WAT hyphal knot -30h 22.5478 9.239 5.3341
WAT hyphal knot -22h 11.4842 0.3071 0.1773
WAT hyphal knot -15h 5.9735 1.0222 0.5902
WAT hyphal knot -7.5h 3.2296 1.3349 0.7707
WAT hyphal knot 4.6787 1.9039 1.0992
WAT hyphal knot +7.5h 5.7382 1.0573 0.6104
Straw time series Time series expression profiling on straw as a carbon source Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 51.5058 19.7618 11.4095
Straw 3h 40.4329 5.5244 3.1895
Straw 6h 29.3035 15.6588 9.0406
Straw 12h 18.4294 6.9244 3.9978
Straw 24h 34.0014 18.1085 10.455
Stress conditions 1 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 16.8556 4.4857 2.5898
Frost (-20C, 30min) 6.394 0.413 0.2384
Heat shock (47C, 2h) 16.5495 5.8139 3.3567
High CO2 5.1816 0.9538 0.5507
Drought (4% agar, 12h) 11.8838 1.9319 1.1154
Oxidative (1mM H2O2, 3h) 15.4103 3.5696 2.0609
Acidic (pH4, 3h) 21.121 2.2083 1.2749
Alkaline (pH9, 3h) 9.2541 3.1696 1.83
Osmotic (sorbitol 2h) 18.828 3.2572 1.8806
CongoRed (3h) 23.7626 4.4445 2.566
Cobalt chloride control 7.2829 2.2164 1.2796
Cobalt chloride 2mM 4.6676 1.8712 1.0803
Stress conditions 2 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 24.279 10.4108 6.0106
Cold stimulation 3.8983 0.9209 0.5317
Scratched surface 11.5277 1.9758 1.1407
Ca2+, 200mM, 24h 80.4113 5.9973 3.4625
Cu2+, 2mM, 6h 12.5687 3.0616 1.7676
Voriconazole 77.6837 14.6144 8.4376
Trichoderma interaction, early 19.847 3.4904 2.0152
Trichoderma interaction 60h 53.2605 31.1237 17.9693
Cobalt chloride 2mM repeat 35.3474 3.0102 1.7379
Hypoxia 0.9318 0.7211 0.4163
Hypoxia control 1.8634 0.745 0.4302
Protoplastation control 2.0285 0.4098 0.2898
Protoplastation 3.5h 0.199 0.0073 0.0051
Protoplastation 1.5h 0.2481 0.0676 0.0478

General data

Systematic name -
Protein id CopciAB_482772.T0
Description protein kinase activity

Annotation summary

0 100 200 300 323

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
Pfam PF00069 Protein kinase domain IPR000719 47 316

SignalP

Prediction Start End Score
No records

Transmembrane domains

Domain n Start End Length
No records

InterPro

Accession Description
IPR011009 Protein kinase-like domain superfamily
IPR000719 Protein kinase domain

GO

Go id Term Ontology
GO:0004672 protein kinase activity MF
GO:0005524 ATP binding MF
GO:0006468 protein phosphorylation BP

KEGG

KEGG Orthology
No records

EggNOG

COG category Description
K protein kinase activity
L protein kinase activity
T protein kinase activity

CAZy

Class Family Subfamily
No records

Transcription factor

Group
No records

Conservation of CopciAB_482772 across fungi.

Arrow shows the origin of gene family containing CopciAB_482772.

Protein

Sequence id CopciAB_482772.T0
Sequence >CopciAB_482772.T0
MSFQMASHPPISRLQDVAPYASIIKRFEINRSRAKVVLDLDATFARGSLSKVFVGTIYVNGQAPSKVVAKFLHAG
PEYPQSQLFLASEVSTVSHLIHPNVARFHGLWWQTEFPASFIHPGIVVEFVDYDLLEYTKARPGERIRVLRGGVL
ALQYIHQQGITHGDVHPGNIRVDAKGNAKVIDFGLAQIQNMGGFPRIDGGRNPRYCAPEIFGSDEEEEPQWGGGS
EVDIWEAKPIASSSDVFAFGMVFLEVMAGVPPYTYEYPPNRPYHELCFAVARGERPRLERYAGLSNRQKGALQRM
WEQDPSARPTMSQVVDMDSPLWS
Length 323

Coding

Sequence id CopciAB_482772.T0
Sequence >CopciAB_482772.T0
ATGTCATTCCAAATGGCTAGCCACCCCCCCATCTCTCGACTTCAGGACGTGGCACCCTACGCGTCCATTATCAAG
AGATTCGAAATCAACCGAAGTCGTGCCAAGGTCGTTCTGGACCTTGACGCGACTTTTGCGAGAGGATCGTTGTCG
AAAGTCTTTGTTGGCACCATCTACGTTAATGGCCAGGCGCCATCCAAGGTGGTCGCCAAGTTCCTGCATGCTGGT
CCAGAGTATCCACAGTCCCAGCTGTTCTTGGCTAGCGAAGTATCCACGGTTAGCCATCTGATCCATCCCAACGTC
GCCCGGTTTCACGGACTCTGGTGGCAAACAGAGTTCCCTGCAAGTTTTATACACCCAGGCATTGTCGTAGAGTTC
GTCGACTACGATTTGTTGGAGTACACCAAGGCCCGTCCGGGAGAAAGGATACGCGTTTTGAGGGGCGGGGTGCTT
GCTCTTCAGTACATCCATCAGCAAGGCATCACACACGGAGATGTCCACCCGGGAAACATCCGTGTAGATGCCAAA
GGAAACGCCAAAGTGATCGACTTTGGCTTGGCCCAGATTCAAAATATGGGCGGCTTTCCAAGGATCGACGGAGGG
CGCAACCCGCGTTACTGCGCACCTGAGATTTTTGGCTCCGACGAAGAGGAGGAGCCACAATGGGGTGGCGGCTCG
GAAGTGGACATATGGGAAGCAAAGCCGATCGCATCTAGTTCGGATGTGTTCGCGTTTGGGATGGTATTTTTGGAG
GTGATGGCTGGGGTACCTCCGTACACCTATGAATATCCTCCGAACCGGCCATACCATGAGCTGTGCTTCGCTGTG
GCGAGAGGGGAGAGGCCACGGTTGGAGCGGTATGCTGGTCTCAGTAACCGGCAGAAGGGGGCCTTGCAGAGGATG
TGGGAGCAGGATCCGAGTGCAAGGCCGACAATGAGCCAGGTTGTCGATATGGATTCTCCCCTTTGGTCATGA
Length 972

Transcript

Sequence id CopciAB_482772.T0
Sequence >CopciAB_482772.T0
AGAAGAGCCCCACCAACCTTCACTCACTCCTTGCTACTGAAGTCTCTTCGCCCCTGTGCATTTAGTCCCCTGCCT
CTCAGCCTGGACCGTTCAGAGCGCCGGATGTCATTCCAAATGGCTAGCCACCCCCCCATCTCTCGACTTCAGGAC
GTGGCACCCTACGCGTCCATTATCAAGAGATTCGAAATCAACCGAAGTCGTGCCAAGGTCGTTCTGGACCTTGAC
GCGACTTTTGCGAGAGGATCGTTGTCGAAAGTCTTTGTTGGCACCATCTACGTTAATGGCCAGGCGCCATCCAAG
GTGGTCGCCAAGTTCCTGCATGCTGGTCCAGAGTATCCACAGTCCCAGCTGTTCTTGGCTAGCGAAGTATCCACG
GTTAGCCATCTGATCCATCCCAACGTCGCCCGGTTTCACGGACTCTGGTGGCAAACAGAGTTCCCTGCAAGTTTT
ATACACCCAGGCATTGTCGTAGAGTTCGTCGACTACGATTTGTTGGAGTACACCAAGGCCCGTCCGGGAGAAAGG
ATACGCGTTTTGAGGGGCGGGGTGCTTGCTCTTCAGTACATCCATCAGCAAGGCATCACACACGGAGATGTCCAC
CCGGGAAACATCCGTGTAGATGCCAAAGGAAACGCCAAAGTGATCGACTTTGGCTTGGCCCAGATTCAAAATATG
GGCGGCTTTCCAAGGATCGACGGAGGGCGCAACCCGCGTTACTGCGCACCTGAGATTTTTGGCTCCGACGAAGAG
GAGGAGCCACAATGGGGTGGCGGCTCGGAAGTGGACATATGGGAAGCAAAGCCGATCGCATCTAGTTCGGATGTG
TTCGCGTTTGGGATGGTATTTTTGGAGGTGATGGCTGGGGTACCTCCGTACACCTATGAATATCCTCCGAACCGG
CCATACCATGAGCTGTGCTTCGCTGTGGCGAGAGGGGAGAGGCCACGGTTGGAGCGGTATGCTGGTCTCAGTAAC
CGGCAGAAGGGGGCCTTGCAGAGGATGTGGGAGCAGGATCCGAGTGCAAGGCCGACAATGAGCCAGGTTGTCGAT
ATGGATTCTCCCCTTTGGTCATGATACCCCTTCCATCCAAATCCCCACTCTCATTCCATCTATTTCTTCCTTCTG
TGTCTCAGTGTCTCTCTGTGTCAACCTAGTATCATTCTACCAATATAAATATAGAGTACCAGATTTATCGGGGTC
TACGC
Length 1205

Gene

Sequence id CopciAB_482772.T0
Sequence >CopciAB_482772.T0
AGAAGAGCCCCACCAACCTTCACTCACTCCTTGCTACTGAAGTCTCTTCGCCCCTGTGCATTTAGTCCCCTGCCT
CTCAGCCTGGACCGTTCAGAGCGCCGGATGTCATTCCAAATGGCTAGCCACCCCCCCATCTCTCGACTTCAGGAC
GTGGCACCCTACGCGTCCATTATCAAGAGATTCGTACGTGGCCTCATCCTCTCTCATGGATCATGATTTTGAATC
GCTAATGTTAATTGCTATGGGACAGGAAATCAACCGAAGTCGTGCCAAGGTCGTTCTGGACCTTGACGCGACTTT
TGCGAGAGGATCGTTGTCGAAAGTCTTTGTTGGCACCATCTACGTTAATGGCCAGGTGAGTAGCGTGTTTGTGCT
TGCCGGTGTATTCAAGTTCTTTTCCTGATACATTGACTTCTTCTGCAAGGCGCCATCCAAGGTGGTCGCCAAGTT
CCTGCATGCTGGTCCAGAGTATCCACAGTCCCAGCTGGTGAGCGCTCTATCGATACTTGTAATAGTGCTATTGAC
CTTAGACTGTCGCTTCTTTTCAGTTCTTGGCTAGCGAAGTATCCACGGTTAGCCATCTGATCCATCCCAACGTCG
CCCGGTTTCACGGACTCTGGTGGCAAACAGAGTTCCCTGCAAGTTTTATACACCCAGGCATTGTCGTAGAGTTCG
TCGACTACGATTTGTTGGAGTACACCAAGGCCCGTCCGGGAGAAAGGATACGCGTTGTAAGTCCCCGCCGTCTAC
TAGTACCATAGCTCAACCATCAATGGAACCTATGTATCGACCCATAGTTGAGGGGCGGGGTGCTTGCTCTTCAGT
ACATCCATCAGCAAGGCATCACACACGGAGATGTCCACCCGGTGAGCAACGTTTAAACGTGCTTTCGGTTGTGAT
GATGGTTGACTCGGCCTACAGGGAAACATCCGTGTAGATGCCAAAGGAAACGCCAAAGTGATCGACTTTGGCTTG
GCCCAGATTCAAAATATGGGCGGCTTTCCAAGGATCGACGGAGGGCGCAACCCGCGTTACTGCGCACCTGAGATT
TTTGGCTCCGACGAAGAGGAGGAGCCACAATGGGGTGGCGGCTCGGAAGTGGACATATGGGAAGCAAAGCCGATC
GCATCTAGTTCGGATGTGTTCGCGTTTGGGATGGTATTTTTGGAGGTGATGGCTGGGGTACCTCCGTACACCTAT
GAATATCCTCCGAACCGGCCATACCATGAGCTGTGCTTCGCTGTGGCGAGAGGGGAGAGGCCACGGTTGGAGCGG
TATGCTGGTCTCAGTAACCGGCAGAAGGGGGCCTTGCAGAGGATGTGGGAGCAGGATCCGAGTGCAAGGCCGACA
ATGAGCCAGGTTGTCGATATGGATTCTCCCCTTTGGTCATGATACCCCTTCCATCCAAATCCCCACTCTCATTCC
ATCTATTTCTTCCTTCTGTGTCTCAGTGTCTCTCTGTGTCAACCTAGTATCATTCTACCAATATAAATATAGAGT
ACCAGATTTATCGGGGTCTACGC
Length 1523