CopciAB_491531
Coprinopsis cinerea A43mutB43mut pab1-1 #326

General data

Systematic name CopciAB_491531 Strain Coprinopsis cinerea Okayama 7
Standard name - Synonyms 491531
Uniprot id Functional description Protein kinase domain
Location scaffold_11:1805966..1807406 Strand -
Gene length (nt) 1441 Transcript length (nt) 1218
CDS length (nt) 1119 Protein length (aa) 372

Reciprocal best hits in model fungi

Strain name Gene / Protein name

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
0

Expression

Name Summary Attribution Assay type
Carbon metabolism Transcriptional changes along alternative morphogenetic paths of C. cinerea Xie et al. 2020 RNA-Seq
Sample Mean cpm SD cpm Se of mean
sclerotia 1.931 0.5277 0.3047
oidia 0.3911 0.2759 0.1593
vegetative_mycelium 0.0472 0.0416 0.024
primordia 1.0091 0.4661 0.2691
hyphal_knot 0.1138 0.0792 0.0457
young_fruiting_body 4.6826 0.4586 0.2647
Complex carbon sources 1 (long incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control - glucose 0.9223 0.0591 0.0341
Wheat bran 0.3825 0.3536 0.2042
Horse manure 0.1465 0.1793 0.1035
Oak leaves 0.2824 0.0909 0.0525
Hay 0.2071 0.2431 0.1404
Corn stalk 0.2482 0.2077 0.1199
Pectine 0.2099 0.1197 0.0691
Microcrystalline cellulose 1.0029 0.6505 0.3756
Xylose 0.8867 0.5052 0.2917
Cellobiose 0.6431 0.0973 0.0562
Lignin 2.1103 2.3486 1.356
Apple peels 0.143 0.0977 0.0564
Coprinopsis challenged with bacteria Transcriptional response to Bacillus subtilis and Escherichia coli. Kombrink et al. 2018 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control 0.0313 0.0271 0.0157
Bsubtilis 0.602 0.3456 0.1995
Ecoli 1.3391 0.0741 0.0428
Early development 1 Time series expression profiling of basidiospore and oidium germination Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
BS 0h 0.6364 0.4951 0.2858
BS 4h 0.0245 0.0424 0.0245
BS 8h 0.1892 0.0972 0.0561
BS 12h 0.1512 0.1969 0.1137
Oidia 0 h 0.4165 0.3909 0.2257
Oidia 18 h 0.4208 0.0909 0.0525
Sclerotia 0.3779 0.6546 0.3779
Early development 2 Time series expression profiling of mycelial growth, light induction and fruiting body initiation. Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
DM 12h 0 0 0
DM 36h 0.0451 0.0781 0.0451
DM 60h 0.0562 0.0974 0.0562
DM 84h 0.0901 0.1561 0.0901
DM 108h 0.0485 0.084 0.0485
DM 132h 0.0615 0.1065 0.0615
DM 156hAE 0 0 0
ELI1hAE 0.0304 0.0526 0.0304
ELI2hAE 0.194 0.1821 0.1051
LI2hAE 0 0 0
LI6hAE 0.1525 0.2642 0.1525
LI12hAE 0.1293 0.1575 0.0909
LI18hAE 0.3659 0.2143 0.1237
LI 24hAE 0.0684 0.1185 0.0684
DM 156hAM 0.0273 0.0472 0.0273
ELI1hAM 0 0 0
ELI2hAM 0 0 0
LI2hAM 0 0 0
LI6hAM 0.0573 0.0992 0.0573
LI12hAM 0.2076 0.3595 0.2076
LI18hAM 0.6353 0.5754 0.3322
LI 24hAM 0.0292 0.0506 0.0292
LI 24hHK 0.625 0.5505 0.3178
L/D 6h 1.488 0.9786 0.565
L/D 12h 1.5685 1.1219 0.6477
L/D 18h 1.9699 0.6622 0.3823
L/D 24h 1.0799 0.6392 0.369
Fruiting body development RNA-Seq analysis of fruiting body development Krizsan et al. 2019 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Vegetative mycelium 0.3723 0.1615 0.0932
Hyphal knots 6.4808 3.0732 1.7743
Primordium 1 4.5002 2.4152 1.3944
Primordium 2 6.3149 4.2534 2.4557
Young Fruiting body cap 43.4954 58.347 33.6866
Younf fruiting body gill 8.4299 12.1533 7.0167
Young fruiting body stipe 5.241 1.8717 1.0806
Mature fruiting body cap_gill 134.3248 113.9196 65.7715
Mature fruiting body stipe 23.9918 8.8686 5.1203
Nitrogen sources (12h incubation) Expression profiling on diverse nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Complete medium - control 0.1318 0.1806 0.1042
NH4NO3 0.0316 0.0547 0.0316
Proline 0.2661 0.1955 0.1129
Tryptophan 0.1179 0.1658 0.0957
Isoleucin 0.1157 0.0443 0.0256
Arginine 0.0719 0.0272 0.0157
Metionine 0.1094 0.0578 0.0334
NaNO3 0.0195 0.0337 0.0195
Plant biomass (12h incubation) Expression profiling on diverse plant biomasses as carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 0.1318 0.1806 0.1042
Citrus peel 0.0776 0.0747 0.0431
Poplar leaves 0.0738 0.0323 0.0186
Typha leaves 0 0 0
Overwintered Salix leaves 0.0371 0.0643 0.0371
Reed flowering 0 0 0
Tigernut 0.2187 0.2885 0.1666
Energy cane 0.0359 0.0622 0.0359
Guar gum 0.1381 0.0361 0.0209
Apple peels 0.0335 0.0581 0.0335
Cellobiose 0.06 0.074 0.0427
Corn stalk 0.3301 0.2323 0.1341
Horse manure 0.1784 0.0557 0.0321
Lignin 0 0 0
Microcrystalline cellulose 0 0 0
Oak leaves 0.2032 0.1278 0.0738
Pectin esterified 0.0116 0.0201 0.0116
Poplar sawdust 0.1149 0.0705 0.0407
Wheat bran 0.1361 0.043 0.0248
Chlamydomonas reinhardtii 0.3112 0.1244 0.0718
Vertatryl alcohol 0.0628 0.0592 0.0342
Furfural 0.0382 0.0331 0.0191
Autoclaved mycelium 0.1069 0.0506 0.0292
Simple and complex carbon and nitrogen sources Expression profiling on diverse complex carbon and nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 0.184 0.1425 0.0823
Ribose 0.2585 0.0727 0.0419
Mannose 0.262 0.2087 0.1475
Fructose 0.3647 0.3267 0.1886
Arabinose 0.7685 0.3497 0.2019
Xylose 0.5592 0.2671 0.1542
Galacturonic acid 0.4982 0.2512 0.145
Rhamnogalacturonan 0.7812 0.3909 0.2257
Pectin esterified 0.8694 0.2465 0.1423
Polygalacturonic acid 0.5282 0.1313 0.0758
Sodium acetate 0.6372 0.4121 0.2379
No nitrogen 0.2118 0.1838 0.1061
BSA 0.6645 0.3282 0.1895
Glutamine 0.8165 0.883 0.5098
No phosphate 0.6448 0.0938 0.0542
No carbon 0.8893 0.0604 0.0427
No sulphur 0.3167 0.2745 0.1585
Simple and complex carbon sources (12h incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 0.1318 0.1806 0.1042
Amylose 0.0992 0.0991 0.0572
Fucose 0.0863 0.1127 0.065
Galactose 0.013 0.0225 0.013
Lactose 0.2628 0.3056 0.1764
Maltose 0 0 0
Mannitol 0.08 0.0965 0.0557
Rhamnose 0.1007 0.0952 0.055
Sorbitol 0.0128 0.0221 0.0128
Trehalose 0.047 0.0476 0.0275
Glycerol 0.078 0.0773 0.0446
Glucuronic acid 0.0582 0.0686 0.0396
Arabinan 0.2181 0.131 0.0756
Galactan 0.0368 0.0637 0.0368
Galactomannan 0.2127 0.2085 0.1204
Glucan 0.0197 0.0342 0.0197
Xylan 0.0144 0.0249 0.0144
Xyloglucan 0.1787 0.1467 0.0847
Arabinogalactan 0.0157 0.0271 0.0157
Pectin 0 0 0
Rhamnogalacturonan 0.1753 0.3036 0.1753
Polygalacturonic acid 0.2855 0.328 0.1894
Mannan 0.094 0.086 0.0496
Amylopectin 0.0383 0.0664 0.0383
Inulin 0.0303 0.0525 0.0303
BSA 0.0269 0.0466 0.0269
Starvation induced by water agar transfer Expression profiling on starvation induced by transfer to water agar Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Control 0.0562 0.0974 0.0562
2h WAT 0.0671 0.1162 0.0671
4h WAT 0 0 0
8h WAT 0 0 0
16h WAT 0.0297 0.0514 0.0297
24h WAT 0 0 0
WAT hyphal knot -30h 0.0634 0.1098 0.0634
WAT hyphal knot -22h 0 0 0
WAT hyphal knot -15h 0.306 0.53 0.306
WAT hyphal knot -7.5h 0 0 0
WAT hyphal knot 0.0317 0.0549 0.0317
WAT hyphal knot +7.5h 0 0 0
Straw time series Time series expression profiling on straw as a carbon source Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 0.1827 0.1431 0.0826
Straw 3h 0.1532 0.0772 0.0446
Straw 6h 0.1593 0.1899 0.1096
Straw 12h 0.0156 0.027 0.0156
Straw 24h 0.0363 0.0329 0.019
Stress conditions 1 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 0.0166 0.0287 0.0166
Frost (-20C, 30min) 0.1667 0.0338 0.0195
Heat shock (47C, 2h) 0.0441 0.0764 0.0441
High CO2 0.0331 0.0573 0.0331
Drought (4% agar, 12h) 0 0 0
Oxidative (1mM H2O2, 3h) 0.6645 0.9273 0.5354
Acidic (pH4, 3h) 0 0 0
Alkaline (pH9, 3h) 0.1047 0.1079 0.0623
Osmotic (sorbitol 2h) 0 0 0
CongoRed (3h) 0.0339 0.0586 0.0339
Cobalt chloride control 0.15 0.1375 0.0794
Cobalt chloride 2mM 0.0802 0.1389 0.0802
Stress conditions 2 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 0 0 0
Cold stimulation 0.0309 0.0535 0.0309
Scratched surface 0 0 0
Ca2+, 200mM, 24h 0 0 0
Cu2+, 2mM, 6h 0 0 0
Voriconazole 0.0292 0.0506 0.0292
Trichoderma interaction, early 0.1719 0.2113 0.122
Trichoderma interaction 60h 9.3584 14.4164 8.3233
Cobalt chloride 2mM repeat 1.5267 1.5634 0.9026
Hypoxia 0.0104 0.018 0.0104
Hypoxia control 0.0494 0.0856 0.0494
Protoplastation control 0.1206 0.0168 0.0119
Protoplastation 3.5h 0.0337 0.0476 0.0337
Protoplastation 1.5h 1.3316 1.8831 1.3316

General data

Systematic name -
Protein id CopciAB_491531.T0
Description Protein kinase domain

Annotation summary

0 100 200 300 372

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
Pfam PF00069 Protein kinase domain IPR000719 73 251

SignalP

Prediction Start End Score
No records

Transmembrane domains

Domain n Start End Length
1 304 326 22

InterPro

Accession Description
IPR000719 Protein kinase domain
IPR011009 Protein kinase-like domain superfamily

GO

Go id Term Ontology
GO:0004672 protein kinase activity MF
GO:0005524 ATP binding MF
GO:0006468 protein phosphorylation BP

KEGG

KEGG Orthology
No records

EggNOG

COG category Description
T Protein kinase domain

CAZy

Class Family Subfamily
No records

Transcription factor

Group
No records

Conservation of CopciAB_491531 across fungi.

Arrow shows the origin of gene family containing CopciAB_491531.

Protein

Sequence id CopciAB_491531.T0
Sequence >CopciAB_491531.T0
MSTSSNTTHHSCASTVTLCEAFWWTQRYQWLLRNGYRLQSNHNPVLDEKTRPKRSNNHSDPEREYVNYGTRLTDG
KEVVLKRLTSPEDEQELALLDFLSQEPLASDARNHCVPVLDTLLVPGDENTVVIVMPLLHSLGDAKLETIGDAVE
LFHQLFEGVQFLHDYRIAHRDISYGNVMYETCRGRTRYYLIDFGLSRCYDLGSSPLEIHHEGTDFSVPEFSTLQP
YDPFPVDVYCLGNFLRHEFLETRTGFAFLRPLVQSMTQAESLRRPDIATAFKHLKALTRDLPPRKLKSRSRQVDV
KKRWSILSLAAALLQLILQLILTLVFHWVPNARKILASWDSAKITAEHFAEPRRKPRWTDGVDIILYFCLGP
Length 372

Coding

Sequence id CopciAB_491531.T0
Sequence >CopciAB_491531.T0
ATGTCTACTAGCTCTAATACCACTCATCATAGCTGCGCCTCCACCGTAACCCTCTGCGAAGCATTCTGGTGGACT
CAACGGTACCAGTGGCTACTGCGCAATGGTTACCGGCTTCAGTCCAACCACAATCCCGTGCTTGACGAGAAGACT
AGACCAAAGAGGTCTAACAACCACTCTGACCCCGAGAGAGAATACGTCAACTACGGCACACGCCTGACTGATGGC
AAAGAAGTCGTATTGAAACGACTCACAAGCCCCGAGGATGAGCAAGAACTAGCTCTACTTGACTTCTTGTCCCAG
GAACCTCTAGCCTCCGATGCTAGAAATCACTGCGTTCCTGTGCTGGATACCCTTCTGGTCCCAGGCGATGAAAAC
ACAGTCGTGATCGTGATGCCCCTTCTCCACTCCCTCGGTGATGCAAAGCTTGAAACTATCGGCGACGCAGTCGAA
CTCTTCCACCAGTTGTTCGAGGGGGTCCAGTTCCTTCACGACTACAGGATAGCACATAGGGATATCTCCTATGGT
AACGTCATGTATGAAACTTGTCGTGGACGCACTCGATACTACCTGATTGATTTCGGGCTCTCAAGATGCTACGAT
CTTGGGTCGTCACCACTCGAGATACACCACGAGGGGACTGATTTCAGCGTGCCGGAGTTCTCCACTCTCCAACCC
TACGACCCTTTCCCAGTGGACGTCTATTGCCTGGGGAACTTCTTGAGACACGAATTTCTAGAGACACGAACAGGA
TTCGCGTTCCTGCGTCCATTAGTCCAGTCCATGACTCAAGCAGAGTCATTAAGGCGCCCAGACATAGCCACCGCC
TTCAAGCATCTCAAGGCCCTGACCCGCGATCTCCCTCCCCGCAAGCTCAAATCACGATCTCGCCAAGTCGACGTC
AAAAAGCGCTGGTCAATACTCTCGTTAGCAGCCGCACTGCTTCAACTAATTCTTCAATTAATACTTACCCTCGTA
TTCCACTGGGTTCCCAACGCCCGCAAGATCCTTGCCAGCTGGGATAGTGCCAAAATAACCGCAGAGCACTTTGCC
GAGCCACGACGAAAGCCCCGTTGGACAGACGGCGTGGATATAATACTTTACTTCTGCCTTGGTCCCTAA
Length 1119

Transcript

Sequence id CopciAB_491531.T0
Sequence >CopciAB_491531.T0
ACCTTTCCATCCCCTCTTCAATTTATACTACAACAGCCCTTCCTCTAATCATGTCTACTAGCTCTAATACCACTC
ATCATAGCTGCGCCTCCACCGTAACCCTCTGCGAAGCATTCTGGTGGACTCAACGGTACCAGTGGCTACTGCGCA
ATGGTTACCGGCTTCAGTCCAACCACAATCCCGTGCTTGACGAGAAGACTAGACCAAAGAGGTCTAACAACCACT
CTGACCCCGAGAGAGAATACGTCAACTACGGCACACGCCTGACTGATGGCAAAGAAGTCGTATTGAAACGACTCA
CAAGCCCCGAGGATGAGCAAGAACTAGCTCTACTTGACTTCTTGTCCCAGGAACCTCTAGCCTCCGATGCTAGAA
ATCACTGCGTTCCTGTGCTGGATACCCTTCTGGTCCCAGGCGATGAAAACACAGTCGTGATCGTGATGCCCCTTC
TCCACTCCCTCGGTGATGCAAAGCTTGAAACTATCGGCGACGCAGTCGAACTCTTCCACCAGTTGTTCGAGGGGG
TCCAGTTCCTTCACGACTACAGGATAGCACATAGGGATATCTCCTATGGTAACGTCATGTATGAAACTTGTCGTG
GACGCACTCGATACTACCTGATTGATTTCGGGCTCTCAAGATGCTACGATCTTGGGTCGTCACCACTCGAGATAC
ACCACGAGGGGACTGATTTCAGCGTGCCGGAGTTCTCCACTCTCCAACCCTACGACCCTTTCCCAGTGGACGTCT
ATTGCCTGGGGAACTTCTTGAGACACGAATTTCTAGAGACACGAACAGGATTCGCGTTCCTGCGTCCATTAGTCC
AGTCCATGACTCAAGCAGAGTCATTAAGGCGCCCAGACATAGCCACCGCCTTCAAGCATCTCAAGGCCCTGACCC
GCGATCTCCCTCCCCGCAAGCTCAAATCACGATCTCGCCAAGTCGACGTCAAAAAGCGCTGGTCAATACTCTCGT
TAGCAGCCGCACTGCTTCAACTAATTCTTCAATTAATACTTACCCTCGTATTCCACTGGGTTCCCAACGCCCGCA
AGATCCTTGCCAGCTGGGATAGTGCCAAAATAACCGCAGAGCACTTTGCCGAGCCACGACGAAAGCCCCGTTGGA
CAGACGGCGTGGATATAATACTTTACTTCTGCCTTGGTCCCTAATTTACCATAGTCCAATAATAATGAGAACATT
GTCCGGGTTCCAACATCA
Length 1218

Gene

Sequence id CopciAB_491531.T0
Sequence >CopciAB_491531.T0
ACCTTTCCATCCCCTCTTCAATTTATACTACAACAGCCCTTCCTCTAATCATGTCTACTAGCTCTAATACCACTC
ATCATAGCTGCGCCTCCACCGTAACCCTCTGCGAAGCATTCTGGTGGACTCAACGGTACCAGTGGCTACTGCGCA
ATGGTTACCGGCTTCAGTCCAACCACAATCCCGTGCTTGACGAGAAGACTAGACCAAAGAGGTCTAACAACCACT
CTGACCCCGAGGTACGATCACAACACCCGTCATTCACGGCATTCGACAAAAGAGTAAACTTGTTCCTATTTTAGA
GAGAATACGTCAACTACGGCACACGCCTGACTGATGGCAAAGAAGTCGTATTGAAACGACTCACAAGCCCCGAGG
ATGAGCAAGAACTAGCTCTACTTGACTTCTTGTCCCAGGAACCTCTAGCCTCCGATGCTAGAAATCACTGCGTTC
CTGTGCTGGATACCCTTCTGGTCCCAGGCGATGAAAACACAGTCGTGATCGTGATGCCCCTTCTCCACTCCCTCG
GTGATGCAAAGCTTGAAACTATCGGCGACGCAGTCGAACTCTTCCACCAGTTGTTCGAGGTAAATAGTGCTAGGC
TACAACGCGCGTTTCATTGTATTGACCCGCCATCTCCGTCTAGGGGGTCCAGTTCCTTCACGACTACAGGATAGC
ACATAGGTGAGTCATCATTGACTTTCGCCAATCGATACTTGCTGACCTGTGCTGATAGGGATATCTCCTATGGTA
ACGTCATGTATGAAACTTGTCGTGGACGCACTCGATACTACCTGATTGATTTCGGGCTCTCAAGATGCTACGATC
TTGGGTCGTCACCACTCGAGATACACCACGAGGGGACTGATTTCAGCGTGCCGGAGTTCTCCACTCTCCAACCCT
ACGACCCTTTCCCAGTGGACGTCTATTGCCTGGGGAACTTCTTGAGACACGAATTTCTAGAGGTAAGAATTCATT
CTTTCAAGTAGCGACATAATTCTTACCTGTCCACAGACACGAACAGGATTCGCGTTCCTGCGTCCATTAGTCCAG
TCCATGACTCAAGCAGAGTCATTAAGGCGCCCAGACATAGCCACCGCCTTCAAGCATCTCAAGGCCCTGACCCGC
GATCTCCCTCCCCGCAAGCTCAAATCACGATCTCGCCAAGTCGACGTCAAAAAGCGCTGGTCAATACTCTCGTTA
GCAGCCGCACTGCTTCAACTAATTCTTCAATTAATACTTACCCTCGTATTCCACTGGGTTCCCAACGCCCGCAAG
ATCCTTGCCAGCTGGGATAGTGCCAAAATAACCGCAGAGCACTTTGCCGAGCCACGACGAAAGCCCCGTTGGACA
GACGGCGTGGATATAATACTTTACTTCTGCCTTGGTCCCTAATTTACCATAGTCCAATAATAATGAGAACATTGT
CCGGGTTCCAACATCA
Length 1441