CopciAB_499402
Coprinopsis cinerea A43mutB43mut pab1-1 #326

General data

Systematic name CopciAB_499402 Strain
Standard name - Synonyms 499402
Uniprot id Functional description Aryl-alcohol oxidase
Location scaffold_1:134115..135282 Strand +
Gene length (nt) 1168 Transcript length (nt) 1059
CDS length (nt) 720 Protein length (aa) 239

Reciprocal best hits in model fungi

Strain name Gene / Protein name

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
0

Expression

Name Summary Attribution Assay type
Carbon metabolism Transcriptional changes along alternative morphogenetic paths of C. cinerea Xie et al. 2020 RNA-Seq
Sample Mean cpm SD cpm Se of mean
sclerotia 0.0594 0.052 0.03
oidia 0.1708 0.1898 0.1096
vegetative_mycelium 0.123 0.0359 0.0207
primordia 0.0469 0.0813 0.0469
hyphal_knot 0.1365 0.0067 0.0039
young_fruiting_body 0 0 0
Complex carbon sources 1 (long incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control - glucose 0.0418 0.0725 0.0418
Wheat bran 0.584 0.0529 0.0305
Horse manure 0.0268 0.0465 0.0268
Oak leaves 0.0945 0.0126 0.0073
Hay 0.1383 0.1211 0.0699
Corn stalk 0.2137 0.0862 0.0498
Pectine 0.0155 0.0269 0.0155
Microcrystalline cellulose 0.827 0.4235 0.2445
Xylose 0.147 0.1275 0.0736
Cellobiose 0.1417 0.1405 0.0811
Lignin 0.0602 0.1044 0.0602
Apple peels 0.3534 0.3244 0.1873
Coprinopsis challenged with bacteria Transcriptional response to Bacillus subtilis and Escherichia coli. Kombrink et al. 2018 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control 0.0157 0.0271 0.0157
Bsubtilis 0 0 0
Ecoli 0 0 0
Early development 1 Time series expression profiling of basidiospore and oidium germination Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
BS 0h 0 0 0
BS 4h 0 0 0
BS 8h 0.0192 0.0332 0.0192
BS 12h 0.0125 0.0216 0.0125
Oidia 0 h 0 0 0
Oidia 18 h 0 0 0
Sclerotia 0.063 0.1091 0.063
Early development 2 Time series expression profiling of mycelial growth, light induction and fruiting body initiation. Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
DM 12h 0.1326 0.0818 0.0472
DM 36h 0.1514 0.1451 0.0838
DM 60h 0.2725 0.1655 0.0956
DM 84h 0.496 0.2086 0.1204
DM 108h 0.3077 0.1196 0.069
DM 132h 0.4431 0.1466 0.0846
DM 156hAE 0.0236 0.0272 0.0157
ELI1hAE 0.0769 0.1331 0.0769
ELI2hAE 0.0903 0.1564 0.0903
LI2hAE 0.031 0.0538 0.031
LI6hAE 0.0402 0.0697 0.0402
LI12hAE 0 0 0
LI18hAE 0.1701 0.2946 0.1701
LI 24hAE 0.0851 0.0945 0.0546
DM 156hAM 1.1286 1.0068 0.5813
ELI1hAM 0.0903 0.1563 0.0903
ELI2hAM 0 0 0
LI2hAM 0 0 0
LI6hAM 0.0446 0.0772 0.0446
LI12hAM 0.1697 0.1471 0.0849
LI18hAM 0.6557 0.725 0.4186
LI 24hAM 0.5399 0.1645 0.095
LI 24hHK 0.1905 0.1176 0.0679
L/D 6h 0.0323 0.043 0.0248
L/D 12h 0 0 0
L/D 18h 0.0464 0.0405 0.0234
L/D 24h 0.0786 0.1362 0.0786
Fruiting body development RNA-Seq analysis of fruiting body development Krizsan et al. 2019 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Vegetative mycelium 0.1089 0.0497 0.0287
Hyphal knots 0.0126 0.0218 0.0126
Primordium 1 0.0254 0.0253 0.0146
Primordium 2 0.0162 0.0141 0.0082
Young Fruiting body cap 0 0 0
Younf fruiting body gill 0.0087 0.015 0.0087
Young fruiting body stipe 0.009 0.0156 0.009
Mature fruiting body cap_gill 0 0 0
Mature fruiting body stipe 0.0208 0.0359 0.0208
Nitrogen sources (12h incubation) Expression profiling on diverse nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Complete medium - control 0.1511 0.1716 0.0991
NH4NO3 0.1983 0.1387 0.0801
Proline 0.1012 0.0915 0.0528
Tryptophan 0.0928 0.1229 0.071
Isoleucin 0.0272 0.0472 0.0272
Arginine 0.1165 0.2018 0.1165
Metionine 0.1239 0.1099 0.0635
NaNO3 0.0694 0.0755 0.0436
Plant biomass (12h incubation) Expression profiling on diverse plant biomasses as carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 0.1511 0.1716 0.0991
Citrus peel 0.1095 0.1245 0.0719
Poplar leaves 0.0741 0.1283 0.0741
Typha leaves 0.153 0.1531 0.0884
Overwintered Salix leaves 0.1345 0.0773 0.0446
Reed flowering 0.2563 0.122 0.0704
Tigernut 0.1137 0.1969 0.1137
Energy cane 0.2859 0.1419 0.0819
Guar gum 0.2533 0.1241 0.0717
Apple peels 0.0649 0.0776 0.0448
Cellobiose 0.0759 0.1009 0.0582
Corn stalk 0.0449 0.0453 0.0262
Horse manure 0.0769 0.0667 0.0385
Lignin 0.2483 0.1893 0.1093
Microcrystalline cellulose 0.1275 0.1188 0.0686
Oak leaves 0.1552 0.103 0.0595
Pectin esterified 0.1086 0.0835 0.0482
Poplar sawdust 0.1957 0.026 0.015
Wheat bran 0.1198 0.1395 0.0805
Chlamydomonas reinhardtii 0.1081 0.0624 0.036
Vertatryl alcohol 0.2525 0.1743 0.1006
Furfural 0.4217 0.3111 0.1796
Autoclaved mycelium 0.1269 0.0843 0.0487
Simple and complex carbon and nitrogen sources Expression profiling on diverse complex carbon and nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 0.4006 0.1794 0.1036
Ribose 0.5801 0.3823 0.2207
Mannose 0.3406 0.1658 0.1172
Fructose 0.2895 0.1567 0.0905
Arabinose 0.2349 0.0382 0.022
Xylose 0.1668 0.0917 0.0529
Galacturonic acid 0.215 0.216 0.1247
Rhamnogalacturonan 0.2302 0.0334 0.0193
Pectin esterified 0.1248 0.117 0.0676
Polygalacturonic acid 0.2369 0.1883 0.1087
Sodium acetate 0.5733 0.4448 0.2568
No nitrogen 0.0623 0.055 0.0318
BSA 0.0946 0.1639 0.0946
Glutamine 0.0777 0.0767 0.0443
No phosphate 0.2213 0.1419 0.0819
No carbon 0.0291 0.0412 0.0291
No sulphur 0.107 0.0095 0.0055
Simple and complex carbon sources (12h incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 0.1511 0.1716 0.0991
Amylose 0.0777 0.0949 0.0548
Fucose 0.0322 0.0558 0.0322
Galactose 0.1234 0.0059 0.0034
Lactose 0.1085 0.07 0.0404
Maltose 0.1875 0.071 0.041
Mannitol 0.2323 0.2391 0.1381
Rhamnose 0.3576 0.2144 0.1238
Sorbitol 0.1244 0.1294 0.0747
Trehalose 0.0787 0.0993 0.0573
Glycerol 0.0795 0.1377 0.0795
Glucuronic acid 0.126 0.1478 0.0853
Arabinan 0.1882 0.1328 0.0767
Galactan 0.0724 0.0824 0.0476
Galactomannan 0.1148 0.1169 0.0675
Glucan 0.1363 0.0642 0.037
Xylan 0.2134 0.0939 0.0542
Xyloglucan 0.0672 0.0782 0.0452
Arabinogalactan 0.0171 0.0295 0.0171
Pectin 0.5298 0.233 0.1345
Rhamnogalacturonan 0.2636 0.3278 0.1893
Polygalacturonic acid 0.098 0.0046 0.0027
Mannan 0.0891 0.1091 0.063
Amylopectin 0.0963 0.1194 0.0689
Inulin 0.1014 0.0593 0.0342
BSA 0.2486 0.1412 0.0815
Starvation induced by water agar transfer Expression profiling on starvation induced by transfer to water agar Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Control 0.2725 0.1655 0.0956
2h WAT 0.4316 0.3743 0.2161
4h WAT 0.553 0.2711 0.1565
8h WAT 1.4722 0.5865 0.3386
16h WAT 1.2749 0.6742 0.3892
24h WAT 0.4 0.2152 0.1242
WAT hyphal knot -30h 0.3339 0.1502 0.0867
WAT hyphal knot -22h 0.0969 0.0879 0.0507
WAT hyphal knot -15h 0.2887 0.3048 0.176
WAT hyphal knot -7.5h 0.3098 0.3434 0.1983
WAT hyphal knot 0.3163 0.1671 0.0965
WAT hyphal knot +7.5h 0 0 0
Straw time series Time series expression profiling on straw as a carbon source Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 0.2386 0.3724 0.215
Straw 3h 0.0728 0.0773 0.0446
Straw 6h 0.0502 0.0515 0.0297
Straw 12h 0.1376 0.1641 0.0947
Straw 24h 0.0935 0.0819 0.0473
Stress conditions 1 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 0.0765 0.0399 0.023
Frost (-20C, 30min) 0.356 0.1688 0.0974
Heat shock (47C, 2h) 0.1745 0.2027 0.117
High CO2 0.1336 0.2314 0.1336
Drought (4% agar, 12h) 0.3543 0.3096 0.1788
Oxidative (1mM H2O2, 3h) 0.0368 0.0638 0.0368
Acidic (pH4, 3h) 0 0 0
Alkaline (pH9, 3h) 0.0705 0.0611 0.0353
Osmotic (sorbitol 2h) 0.0365 0.0632 0.0365
CongoRed (3h) 0.1328 0.2299 0.1328
Cobalt chloride control 0.0616 0.0534 0.0308
Cobalt chloride 2mM 0.2868 0.134 0.0774
Stress conditions 2 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 0.005 0.0086 0.005
Cold stimulation 0.0102 0.0177 0.0102
Scratched surface 0.1446 0.1562 0.0902
Ca2+, 200mM, 24h 0.1001 0.0871 0.0503
Cu2+, 2mM, 6h 0.0033 0.0058 0.0033
Voriconazole 0 0 0
Trichoderma interaction, early 0.3617 0.4156 0.24
Trichoderma interaction 60h 0.8283 1.4346 0.8283
Cobalt chloride 2mM repeat 0 0 0
Hypoxia 0.1811 0.1584 0.0915
Hypoxia control 0.3372 0.0908 0.0524
Protoplastation control 0.1749 0.06 0.0424
Protoplastation 3.5h 0.4847 0.6854 0.4847
Protoplastation 1.5h 2.1592 0.5034 0.3559

General data

Systematic name -
Protein id CopciAB_499402.T0
Description Aryl-alcohol oxidase

Annotation summary

0 100 200 239

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
Pfam PF05199 GMC oxidoreductase IPR007867 6 158

SignalP

Prediction Start End Score
No records

Transmembrane domains

Domain n Start End Length
No records

InterPro

Accession Description
IPR036188 FAD/NAD(P)-binding domain superfamily
IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal
IPR012132 Glucose-methanol-choline oxidoreductase

GO

Go id Term Ontology
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors MF
GO:0050660 flavin adenine dinucleotide binding MF

KEGG

KEGG Orthology
K00108
K20154

EggNOG

COG category Description
E Aryl-alcohol oxidase

CAZy

Class Family Subfamily
AA AA3 AA3_2

Transcription factor

Group
No records

Conservation of CopciAB_499402 across fungi.

Arrow shows the origin of gene family containing CopciAB_499402.

Protein

Sequence id CopciAB_499402.T0
Sequence >CopciAB_499402.T0
MAFLTPYSRGSVTLSSSNPYDPPLIDTNFLSHPFDLAAITEGIRTANAFYSSPSFKRDNHIMEFIGPDPDKLSKE
EFEREIKKTMGSFLHAVGTTAMGPWGVDDDNDGDGAKGVAGRVVDPEFRVRGVKGLRVVDAGVIPYVPSGHTQAP
VYIVAERAVDFIRETWGQKYIAPGSISSFRPCPSPDCVRLITQKVAYEMSLSIPSTMRVGALNSSYESPSKNRVL
RHPCSFISAMLIDV
Length 239

Coding

Sequence id CopciAB_499402.T0
Sequence >CopciAB_499402.T0
ATGGCCTTCTTGACGCCTTACTCACGCGGCTCAGTAACGCTCTCCTCCTCAAATCCCTACGACCCACCGCTCATC
GACACGAACTTCCTCTCCCACCCATTCGACCTGGCGGCTATAACCGAAGGAATCCGTACCGCCAACGCCTTTTAC
TCCTCTCCCTCGTTCAAACGGGATAACCACATCATGGAGTTCATCGGTCCAGATCCAGATAAACTCAGTAAAGAG
GAATTTGAGAGGGAGATTAAGAAGACGATGGGGTCGTTTTTGCATGCTGTTGGGACTACTGCTATGGGACCTTGG
GGTGTGGACGACGACAATGATGGCGATGGTGCGAAGGGAGTGGCAGGGCGAGTGGTTGATCCGGAGTTCAGGGTG
AGAGGTGTGAAGGGGTTGAGAGTTGTCGATGCTGGCGTTATCCCGTACGTTCCGTCTGGGCATACTCAAGCGCCA
GTCTATATCGTAGCCGAAAGAGCAGTCGATTTCATCAGAGAGACGTGGGGACAGAAGTATATCGCGCCCGGTTCC
ATCTCTAGTTTTCGTCCATGTCCATCCCCTGACTGCGTTCGCCTAATCACCCAAAAGGTCGCATACGAAATGTCA
TTATCTATCCCTTCAACTATGAGAGTTGGAGCCCTGAATTCGAGTTACGAGAGCCCGTCCAAAAATAGGGTTTTA
CGACATCCCTGTTCCTTTATAAGCGCAATGCTTATTGACGTTTGA
Length 720

Transcript

Sequence id CopciAB_499402.T0
Sequence >CopciAB_499402.T0
CTTGTCTTATAGACATTCTTATTGCTCAACGTCGCTCATCGCGTTCTAAGGCACCGCCGGTTTCTGGTATTGGTT
GTGGTTTGGGTTTAGTGTTCGCTCTTCGCGACAGGCGGACGAACCGGACTGGACCCTTCTCTAAAGCGACGGATC
ATCTTTACCTCTACTTCCGTCTTCCGGATAACTCGAGTGTGTTTGAGACGTGGAAGGATCCGAGTCCCGGACGCC
GGTCAGCGCATTTCGAGTTACCCTTGGAGGTCCGTCTGAAGATATGCTTTTCCCCTTGAGACGAGGGGTGGTTAA
TGATGTGGCTAGAAATCCGCACCTGAGATACCGGGGTACATGGCCTTCTTGACGCCTTACTCACGCGGCTCAGTA
ACGCTCTCCTCCTCAAATCCCTACGACCCACCGCTCATCGACACGAACTTCCTCTCCCACCCATTCGACCTGGCG
GCTATAACCGAAGGAATCCGTACCGCCAACGCCTTTTACTCCTCTCCCTCGTTCAAACGGGATAACCACATCATG
GAGTTCATCGGTCCAGATCCAGATAAACTCAGTAAAGAGGAATTTGAGAGGGAGATTAAGAAGACGATGGGGTCG
TTTTTGCATGCTGTTGGGACTACTGCTATGGGACCTTGGGGTGTGGACGACGACAATGATGGCGATGGTGCGAAG
GGAGTGGCAGGGCGAGTGGTTGATCCGGAGTTCAGGGTGAGAGGTGTGAAGGGGTTGAGAGTTGTCGATGCTGGC
GTTATCCCGTACGTTCCGTCTGGGCATACTCAAGCGCCAGTCTATATCGTAGCCGAAAGAGCAGTCGATTTCATC
AGAGAGACGTGGGGACAGAAGTATATCGCGCCCGGTTCCATCTCTAGTTTTCGTCCATGTCCATCCCCTGACTGC
GTTCGCCTAATCACCCAAAAGGTCGCATACGAAATGTCATTATCTATCCCTTCAACTATGAGAGTTGGAGCCCTG
AATTCGAGTTACGAGAGCCCGTCCAAAAATAGGGTTTTACGACATCCCTGTTCCTTTATAAGCGCAATGCTTATT
GACGTTTGA
Length 1059

Gene

Sequence id CopciAB_499402.T0
Sequence >CopciAB_499402.T0
CTTGTCTTATAGACATTCTTATTGCTCAACGTCGCTCATCGCGTTCTAAGGCACCGCCGGTTTCTGGTATTGGTT
GTGGTTTGGGTTTAGTGTTCGCTCTTCGCGACAGGCGGACGAACCGGACTGGACCCTTCTCTAAAGCGACGGATC
ATCTTTACCTCTACTTCCGTCTTCCGGATAACTCGAGTGTGTTTGAGACGTGGAAGGATCCGAGTCCCGGACGCC
GGTCAGCGCATTTCGAGTTACCCTTGGAGGTCCGTCTGAAGATATGCTTTTCCCCTTGAGACGAGGGGTGGTTAA
TGATGTGGCTAGAAATCCGCACCTGAGATACCGGGGTACATGGCCTTCTTGACGCCTTACTCACGTACGTCGCAT
CGATGTTCATCATGAATTACGTTCGATAACCCGCAAAAAACAGGCGGCTCAGTAACGCTCTCCTCCTCAAATCCC
TACGACCCACCGCTCATCGACACGAACTTCCTCTCCCACCCATTCGACCTGGCGGCTATAACCGAAGGAATCCGT
ACCGCCAACGCCTTTTACTCCTCTCCCTCGTTCAAACGGGATAACCACATCATGGAGTTCATCGGTCCAGATCCA
GATAAACTCAGTAAAGAGGAATTTGAGAGGGAGATTAAGAAGACGATGGGGTCGTTTTTGCATGCTGTTGGGACT
ACTGCTATGGGACCTTGGGGTGTGGACGACGACAATGATGGCGATGGTGCGAAGGGAGTGGCAGGGCGAGTGGTT
GATCCGGAGTTCAGGGTGAGAGGTGTGAAGGGGTTGAGAGTTGTCGATGCTGGCGTTATCGTGAGTGCTTTCGAC
TGTACGAGAGCTTGTACGTGACTGATCATCACACGTGTAGCCGTACGTTCCGTCTGGGCATACTCAAGCGCCAGT
CTATATCGTAGCCGAAAGAGCAGTCGATTTCATCAGAGAGACGTGGGGACAGAAGTATATCGCGCCCGGTTCCAT
CTCTAGTTTTCGTCCATGTCCATCCCCTGACTGCGTTCGCCTAATCACCCAAAAGGTCGCATACGAAATGTCATT
ATCTATCCCTTCAACTATGAGAGTTGGAGCCCTGAATTCGAGTTACGAGAGCCCGTCCAAAAATAGGGTTTTACG
ACATCCCTGTTCCTTTATAAGCGCAATGCTTATTGACGTTTGA
Length 1168