Systematic name | CopciAB_500026 | Strain | Coprinopsis cinerea Okayama 7 |
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Standard name | - | Synonyms | 500026 |
Uniprot id | Functional description | 50S ribosome-binding GTPase | |
Location | scaffold_8:1194753..1197529 | Strand | + |
Gene length (nt) | 2777 | Transcript length (nt) | 2390 |
CDS length (nt) | 1416 | Protein length (aa) | 471 |
Strain name | Gene / Protein name |
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Strain name | Gene / Protein name | Pident | E-value | Bits |
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Pleurotus ostreatus PC15 | PleosPC15_2_163033 | 24.8 | 6.736E-15 | 77 |
Pleurotus ostreatus PC9 | PleosPC9_1_128879 | 24.8 | 6.594E-15 | 77 |
Grifola frondosa | Grifr_OBZ78345 | 19.3 | 0.0001 | 44 |
Name | Summary | Attribution | Assay type | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Carbon metabolism | Transcriptional changes along alternative morphogenetic paths of C. cinerea | Xie et al. 2020 | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Complex carbon sources 1 (long incubation) | Expression profiling on diverse complex carbon sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Coprinopsis challenged with bacteria | Transcriptional response to Bacillus subtilis and Escherichia coli. | Kombrink et al. 2018 | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Early development 1 | Time series expression profiling of basidiospore and oidium germination | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Early development 2 | Time series expression profiling of mycelial growth, light induction and fruiting body initiation. | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Fruiting body development | RNA-Seq analysis of fruiting body development | Krizsan et al. 2019 | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Nitrogen sources (12h incubation) | Expression profiling on diverse nitrogen sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Plant biomass (12h incubation) | Expression profiling on diverse plant biomasses as carbon sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Simple and complex carbon and nitrogen sources | Expression profiling on diverse complex carbon and nitrogen sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Simple and complex carbon sources (12h incubation) | Expression profiling on diverse complex carbon sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Starvation induced by water agar transfer | Expression profiling on starvation induced by transfer to water agar | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Straw time series | Time series expression profiling on straw as a carbon source | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Stress conditions 1 | Expression profiling under various stress conditions | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Stress conditions 2 | Expression profiling under various stress conditions | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Systematic name | - |
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Protein id | CopciAB_500026.T0 |
Description | 50S ribosome-binding GTPase |
Analysis | Signature accession | Signature description | InterPro Accession | Start | End |
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No records |
Prediction | Start | End | Score |
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No records |
Domain n | Start | End | Length |
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No records |
Accession | Description |
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No records |
Go id | Term | Ontology |
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No records |
KEGG Orthology |
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No records |
COG category | Description |
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S | 50S ribosome-binding GTPase |
Class | Family | Subfamily |
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No records |
Group |
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No records |
Arrow shows the origin of gene family containing CopciAB_500026.
Sequence id | CopciAB_500026.T0 |
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Sequence |
>CopciAB_500026.T0 MASQQPQRQRSMAAFQSCSQFYAIDSHIWVINGDCINYRTLGRDEASNSRTMPSTFSMQRTAAAEQVAVTNSPAP WIYTSASFGEVRLALGCISEVIRFSQIKGLYSHTRELAEVVVLAEKAYKACRGIDIASLVQRGIKECISGLAQCL PGIFSELMHIAFLSDGANLQSSPLGDIVQRWWNSNQKEEEISTLREKVQKHLENLCGCLYSLKSFHWLKWVMFLS LEDGSHFNPEILFRFLESRTPSPRHLRIDEVLIMEPLAGRPLSVPTRFVSSFEDLHLVLQQGCRGTLTSRYIECN EYQLDESSTNLTLDSTCFQQLFKPGKQFEVSIRVVTHGTRLSECPRCGHDNGYLDGRRVDGWVRCGSCLAQFNAV EYQYPSIPTPEDDDVGITAEGQHTEAASTRHDAQADSSSSAPEHNTTPRQAGGHPEARSPLSAPTFQQASPNGQG APIENTLEIDTPRGGISSVSE |
Length | 471 |
Sequence id | CopciAB_500026.T0 |
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Sequence |
>CopciAB_500026.T0 ATGGCCAGCCAGCAACCGCAACGCCAGCGGTCGATGGCCGCCTTCCAGAGCTGCTCCCAGTTCTATGCCATCGAC AGCCACATCTGGGTCATCAATGGTGACTGTATCAACTACCGCACCCTGGGCCGCGACGAGGCATCAAACTCGAGA ACAATGCCCTCCACCTTTTCCATGCAAAGAACAGCAGCCGCAGAACAAGTCGCCGTCACCAATTCGCCTGCGCCT TGGATCTACACAAGCGCATCTTTCGGAGAAGTGAGACTGGCTTTGGGCTGTATCTCAGAGGTGATCCGGTTTAGC CAGATCAAGGGCCTCTATTCCCATACCCGCGAATTGGCGGAGGTTGTGGTGCTGGCGGAAAAAGCGTACAAGGCT TGCAGAGGGATCGACATTGCCAGTCTTGTCCAACGCGGCATAAAGGAATGCATCTCAGGACTCGCCCAATGTCTT CCCGGTATCTTTTCTGAACTGATGCACATCGCCTTCCTTTCCGATGGCGCTAATCTGCAAAGCTCCCCGTTGGGA GATATTGTGCAACGCTGGTGGAACAGCAACCAGAAGGAAGAAGAAATCTCGACTCTGCGGGAGAAGGTGCAGAAG CACTTGGAGAATTTGTGCGGATGTCTATACTCGCTTAAATCATTCCATTGGTTGAAATGGGTGATGTTCCTATCC CTCGAGGACGGCTCTCACTTCAACCCCGAAATCCTGTTCCGCTTTCTGGAATCCCGGACACCGTCTCCTCGCCAT CTTCGAATCGATGAGGTCCTGATAATGGAACCTCTCGCTGGCCGGCCGCTGTCAGTGCCGACTCGATTTGTATCT TCGTTCGAGGACTTGCACCTTGTCCTCCAGCAAGGCTGCCGGGGAACTCTGACCAGCCGTTACATCGAGTGCAAC GAATACCAGTTGGACGAATCATCGACAAATCTGACTCTGGATTCCACGTGTTTCCAGCAGCTCTTCAAGCCAGGC AAACAATTTGAGGTCAGTATCCGAGTGGTAACCCACGGCACGAGGCTATCCGAGTGTCCACGCTGTGGGCATGAT AATGGTTATTTAGACGGACGCAGAGTCGACGGATGGGTGAGATGCGGTTCGTGCCTCGCTCAGTTTAACGCTGTC GAGTATCAGTATCCGTCAATTCCGACGCCCGAGGATGACGATGTCGGCATAACAGCTGAGGGACAGCACACTGAG GCCGCCTCTACAAGACATGACGCTCAGGCGGACTCCAGCTCCAGCGCCCCTGAACATAATACTACACCAAGACAA GCCGGCGGGCATCCTGAAGCTCGAAGCCCTTTGTCGGCTCCTACTTTCCAACAGGCGTCTCCGAATGGTCAGGGA GCTCCCATTGAAAACACTTTGGAAATCGATACTCCACGAGGCGGCATTTCCAGCGTCTCAGAGTAG |
Length | 1416 |
Sequence id | CopciAB_500026.T0 |
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Sequence |
>CopciAB_500026.T0 GCACCTACTACTATGGCCAGCCAGCAACCGCAACGCCAGCGGTCGATGGCCGCCTTCCAGAGCTGCTCCCAGTTC TATGCCATCGACAGCCACATCTGGGTCATCAATGGTGACTGTATCAACTACCGCACCCTGGGCCGCGACGAGGCA TCAAACTCGAGAACAATGCCCTCCACCTTTTCCATGCAAAGAACAGCAGCCGCAGAACAAGTCGCCGTCACCAAT TCGCCTGCGCCTTGGATCTACACAAGCGCATCTTTCGGAGAAGTGAGACTGGCTTTGGGCTGTATCTCAGAGGTG ATCCGGTTTAGCCAGATCAAGGGCCTCTATTCCCATACCCGCGAATTGGCGGAGGTTGTGGTGCTGGCGGAAAAA GCGTACAAGGCTTGCAGAGGGATCGACATTGCCAGTCTTGTCCAACGCGGCATAAAGGAATGCATCTCAGGACTC GCCCAATGTCTTCCCGGTATCTTTTCTGAACTGATGCACATCGCCTTCCTTTCCGATGGCGCTAATCTGCAAAGC TCCCCGTTGGGAGATATTGTGCAACGCTGGTGGAACAGCAACCAGAAGGAAGAAGAAATCTCGACTCTGCGGGAG AAGGTGCAGAAGCACTTGGAGAATTTGTGCGGATGTCTATACTCGCTTAAATCATTCCATTGGTTGAAATGGGTG ATGTTCCTATCCCTCGAGGACGGCTCTCACTTCAACCCCGAAATCCTGTTCCGCTTTCTGGAATCCCGGACACCG TCTCCTCGCCATCTTCGAATCGATGAGGTCCTGATAATGGAACCTCTCGCTGGCCGGCCGCTGTCAGTGCCGACT CGATTTGTATCTTCGTTCGAGGACTTGCACCTTGTCCTCCAGCAAGGCTGCCGGGGAACTCTGACCAGCCGTTAC ATCGAGTGCAACGAATACCAGTTGGACGAATCATCGACAAATCTGACTCTGGATTCCACGTGTTTCCAGCAGCTC TTCAAGCCAGGCAAACAATTTGAGGTCAGTATCCGAGTGGTAACCCACGGCACGAGGCTATCCGAGTGTCCACGC TGTGGGCATGATAATGGTTATTTAGACGGACGCAGAGTCGACGGATGGGTGAGATGCGGTTCGTGCCTCGCTCAG TTTAACGCTGTCGAGTATCAGTATCCGTCAATTCCGACGCCCGAGGATGACGATGTCGGCATAACAGCTGAGGGA CAGCACACTGAGGCCGCCTCTACAAGACATGACGCTCAGGCGGACTCCAGCTCCAGCGCCCCTGAACATAATACT ACACCAAGACAAGCCGGCGGGCATCCTGAAGCTCGAAGCCCTTTGTCGGCTCCTACTTTCCAACAGGCGTCTCCG AATGGTCAGGGAGCTCCCATTGAAAACACTTTGGAAATCGATACTCCACGAGGCGGCATTTCCAGCGTCTCAGAG TAGAGGTCATCCTTTCCAACCCCGTCGAGCAAGACCGCTCTCTCACAATCAGCATACCTTCTTCCCCTGAAGTCC TACCACCACTAAGTCCAGATTTGGAATACGAGTTTGTCCGTTTGGGAGACGTATCGCCATCAAGTAGCCAGCCAA AACCTCTGGCGACCTCTGGGCGGAAAGGCACACAATTCTCGCAAGATGACATTATTGTCGTGTTGATGGGACCCA CGGGGAGTGGAAAGAGCACGTTCATCAACTGCGCGATGAGGAGCCGTGTCGCTCGCGTCACACATTCGGTCCAAT CCTGCACCGAAAAGATTCACGTTTATGGTTGCCACCATCCAACCAAGCAAGACAGAAGAGTCTTTTTCATCGATA CACCGGGTTTTGAAGGCACTGCCATGAATGACCGCAAAACACTCAAGTCGATCGCCAAGTGGTTGAAGAATATGT ACGGGACAGGGGTCAGACTTAGCGGAATCCTTCTATTCCACATGATGACGGAGGCCCGTTGGAATGGGACGAAAG ACCACAACCTTGAAGTATTTCAAGAGATGTGCGGCCCAAAGGCCCTGAAAAACGTCGTCGTCGTTTCTACCGGCT GGGAGGAACTAGAGGAGGATGTCGGCTCGATTCGAGAGCAGTACCTTGTTGACAAGGTCTTGGCAGAGTCCATCT CGCAAGGCTGCCGATACGAACGCTTTAGCACCCAGGACTTCGACGCGGCCTGGGATATCATTAACCTTTTCCGAT GCAAGGGGAGGGCACTACTTATTCAGGAGGAGATGGCGAAGTGGAGGATGCCACTCAAGATGACCTCGGCATTCA AAGCTTTGGCTCGTTTCGGCCGGATGGGCAAATGAGAGACAGCAGCGATTTTTACGACTTTCCGTTTTAGCTTTT CCAGCTTTCTGGTGCTCTATGTAGATACTACACACATTATGGAAAATTGGAGCATTTTCCGTACC |
Length | 2390 |
Sequence id | CopciAB_500026.T0 |
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Sequence |
>CopciAB_500026.T0 GCACCTACTACTATGGCCAGCCAGCAACCGCAACGCCAGCGGTCGATGGCCGCCTTCCAGAGCTGCTCCCAGTTC TATGCCATCGACAGCCACATCTGGGTCATCAATGGTGACTGTATCAACTACCGCACCCTGGGCCGCGACGAGGCA TCAAACTCGAGAACAATGCCCTCCACCTTTTCCATGCAAAGAACAGCAGCCGCAGAACAAGTCGCCGTCACCAAT TCGCCTGCGCCTTGGATCTACACAAGCGCATCTTTCGGAGAAGTGAGACTGGCTTTGGGCTGTATCTCAGAGGTG ATCCGGTTTAGCCAGATCAAGGGCCTCTATTCCCATACCCGCGAATTGGCGGAGGTTGTGGTGCTGGCGGAAAAA GCGTACAAGGCTTGCAGAGGGATCGACATTGCCAGTCTTGTCCAACGCGGCATAAAGGAATGCATCTCAGGACTC GCCCAATGTCTTCCCGGTATCTTTTCTGAACTGATGCACATCGCCTTCCTTTCCGATGGCGCTAATCTGCAAAGC TCCCCGTTGGGAGATATTGTGCAACGCTGGTGGAACAGCAACCAGAAGGAAGAAGAAATCTCGACTCTGCGGGAG AAGGTGCAGAAGCACTTGGAGAATTTGTGCGGATGTCTATACTCGCTTAAATCGTAAGAATCGGTATTAAATTTT AATGCCCTGGCCGTACTGACTGCAATTCATAGATTCCATTGGTTGAAATGGGTGATGTTCCTATCCCTCGAGGAC GGCTCTCACTTCAACCCCGAAATCCTGTTCCGCTTTCTGGAATCCCGGACACCGTCTCCTCGCCATCTTCGAATC GATGAGGTCCTGATAATGGAACCTCTCGCTGGCCGGCCGCTGTCAGTGCCGACTCGATTTGTATCTTCGTTCGAG GTACGCTTGCTGACACGTAATGAGATCTATAGCTCACCAACAGCATTCACAGGACTTGCACCTTGTCCTCCAGCA AGGCTGCCGGGGAACTCTGACCAGCCGTTACATCGAGTGCAACGAATACCAGTTGGACGAATCATCGACAAATCT GACTCTGGATTCCACGTGTTTCCAGCAGCTCTTCAAGCCAGGCAAACAATTTGAGGTCAGTATCCGAGTGGTAAC CCACGGCACGAGGCTATCCGAGTGTCCACGCTGTGGGCATGATAATGGTTATTTAGACGGACGCAGAGTCGACGG ATGGGTGAGATGGTAAGTTTAACTGCGTCAACAATCTCAAATCGGTTCTTTACAAGAGTGCGCGAAGCGGTTCGT GCCTCGCTCAGTTTAACGCTGTCGAGTATCAGTATCCGTCAATTCCGACGCCCGAGGATGACGATGTCGGCATAA CGTATGTAACTCCTCCACTACATTCCTCTGGTCGGTATTGAAACGATAACAGAGCTGAGGGACAGCACACTGAGG CCGCCTCTACAAGACATGACGCTCAGGCGGACTCCAGCTCCAGCGCCCCTGAACATAATACTACACCAAGACAAG CCGGCGGGCATCCTGAAGCTCGAAGCCCTTTGTCGGCTCCTACTTTCCAACAGGCGTCTCCGAATGGTCAGGGAG CTCCCATTGAAAACACTTTGGAAATCGATACTCCACGAGGCGGCATTTCCAGCGTCTCAGAGTAGAGGTCATCCT TTCCAACCCCGTCGAGCAAGACCGCTCTCTCACAATCAGCATACCTTCTTCCCCTGAAGTCCTACCACCACTAAG TCCAGATTTGGAATACGAGTTTGTCCGTTTGGGAGACGTATCGCCATCAAGTAGCCAGCCAAAACCTCTGGCGAC CTCTGGGCGGAAAGGCACACAATTCTCGCAAGATGACATTATTGTCGTGTTGGTACTTTCACAAGCCTGATTTCC GAAACACCTTACTCACGTAGATCCAAGGTTGATGGGACCCACGGGGAGTGGAAAGAGCACGGTACGTGGCCCTAA TCATTCTCCTGGCCTATTAGTGTTCTCTGACAATCTGTATCTCGACAGTTCATCAACTGCGCGATGAGGAGCCGT GTCGCTCGCGTCACACATTCGGTCCAATCCTGCACCGAAAAGATTCACGTTTATGGTTGCCACCATCCAACCAAG CAAGACAGAAGAGTCTTTTTCATCGATACACCGGGTTTTGAAGGCACTGCCATGAATGACCGCAAAACACTCAAG TCGATCGCCAAGTGGTTGAAGAATATGTTTGTACCTTTGCCTCCTTATTCTATACCTCTCGCTGACTAGATCACG CTTGACGCAGGTACGGGACAGGGGTCAGACTTAGCGGAATCCTTCTATTCCACATGATGACGGAGGCCCGTTGGA ATGGGACGAAAGACCACAACCTTGAAGTATTTCAAGAGATGTGCGGCCCAAAGGCCCTGAAAAACGTCGTCGTCG TTTCTACCGGCTGGGAGGAACTAGAGGAGGATGTCGGCTCGATTCGAGAGCAGTACCTTGTTGACAAGGTCTTGG CAGAGTCCATCTCGCAAGGCTGCCGATACGAACGCTTTAGCACCCAGGACTTCGACGCGGCCTGGGATATCATTA ACCTTTTCCGATGCAAGGGGAGGGCACTACTTATTCAGGAGGAGATGGCGAAGTGGAGGATGCCACTCAAGATGA CCTCGGCATTCAAAGCTTTGGCTCGTTTCGGCCGGATGGGCAAATGAGAGACAGCAGCGATTTTTACGACTTTCC GTTTTAGCTTTTCCAGCTTTCTGGTGCTCTATGTAGATACTACACACATTATGGAAAATTGGAGCATTTTCCGTA CC |
Length | 2777 |