| Systematic name | CopciAB_500026 | Strain | Coprinopsis cinerea Okayama 7 |
|---|---|---|---|
| Standard name | - | Synonyms | 500026 |
| Uniprot id | Functional description | 50S ribosome-binding GTPase | |
| Location | scaffold_8:1194753..1197529 | Strand | + |
| Gene length (nt) | 2777 | Transcript length (nt) | 2390 |
| CDS length (nt) | 1416 | Protein length (aa) | 471 |
| Strain name | Gene / Protein name |
|---|---|
| Strain name | Gene / Protein name | Pident | E-value | Bits |
|---|---|---|---|---|
| Pleurotus ostreatus PC15 | PleosPC15_2_163033 | 24.8 | 6.736E-15 | 77 |
| Pleurotus ostreatus PC9 | PleosPC9_1_128879 | 24.8 | 6.594E-15 | 77 |
| Grifola frondosa | Grifr_OBZ78345 | 19.3 | 0.0001 | 44 |
| Name | Summary | Attribution | Assay type | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Carbon metabolism | Transcriptional changes along alternative morphogenetic paths of C. cinerea | Xie et al. 2020 | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Complex carbon sources 1 (long incubation) | Expression profiling on diverse complex carbon sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Coprinopsis challenged with bacteria | Transcriptional response to Bacillus subtilis and Escherichia coli. | Kombrink et al. 2018 | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Early development 1 | Time series expression profiling of basidiospore and oidium germination | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Early development 2 | Time series expression profiling of mycelial growth, light induction and fruiting body initiation. | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Fruiting body development | RNA-Seq analysis of fruiting body development | Krizsan et al. 2019 | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Nitrogen sources (12h incubation) | Expression profiling on diverse nitrogen sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Plant biomass (12h incubation) | Expression profiling on diverse plant biomasses as carbon sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Simple and complex carbon and nitrogen sources | Expression profiling on diverse complex carbon and nitrogen sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Simple and complex carbon sources (12h incubation) | Expression profiling on diverse complex carbon sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Starvation induced by water agar transfer | Expression profiling on starvation induced by transfer to water agar | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Straw time series | Time series expression profiling on straw as a carbon source | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Stress conditions 1 | Expression profiling under various stress conditions | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Stress conditions 2 | Expression profiling under various stress conditions | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Systematic name | - |
|---|---|
| Protein id | CopciAB_500026.T0 |
| Description | 50S ribosome-binding GTPase |
| Analysis | Signature accession | Signature description | InterPro Accession | Start | End |
|---|---|---|---|---|---|
| No records | |||||
| Prediction | Start | End | Score |
|---|---|---|---|
| No records | |||
| Domain n | Start | End | Length |
|---|---|---|---|
| No records | |||
| Accession | Description |
|---|---|
| No records | |
| Go id | Term | Ontology |
|---|---|---|
| No records | ||
| KEGG Orthology |
|---|
| No records |
| COG category | Description |
|---|---|
| S | 50S ribosome-binding GTPase |
| Class | Family | Subfamily |
|---|---|---|
| No records | ||
| Group |
|---|
| No records |
Arrow shows the origin of gene family containing CopciAB_500026.
| Sequence id | CopciAB_500026.T0 |
|---|---|
| Sequence |
>CopciAB_500026.T0 MASQQPQRQRSMAAFQSCSQFYAIDSHIWVINGDCINYRTLGRDEASNSRTMPSTFSMQRTAAAEQVAVTNSPAP WIYTSASFGEVRLALGCISEVIRFSQIKGLYSHTRELAEVVVLAEKAYKACRGIDIASLVQRGIKECISGLAQCL PGIFSELMHIAFLSDGANLQSSPLGDIVQRWWNSNQKEEEISTLREKVQKHLENLCGCLYSLKSFHWLKWVMFLS LEDGSHFNPEILFRFLESRTPSPRHLRIDEVLIMEPLAGRPLSVPTRFVSSFEDLHLVLQQGCRGTLTSRYIECN EYQLDESSTNLTLDSTCFQQLFKPGKQFEVSIRVVTHGTRLSECPRCGHDNGYLDGRRVDGWVRCGSCLAQFNAV EYQYPSIPTPEDDDVGITAEGQHTEAASTRHDAQADSSSSAPEHNTTPRQAGGHPEARSPLSAPTFQQASPNGQG APIENTLEIDTPRGGISSVSE |
| Length | 471 |
| Sequence id | CopciAB_500026.T0 |
|---|---|
| Sequence |
>CopciAB_500026.T0 ATGGCCAGCCAGCAACCGCAACGCCAGCGGTCGATGGCCGCCTTCCAGAGCTGCTCCCAGTTCTATGCCATCGAC AGCCACATCTGGGTCATCAATGGTGACTGTATCAACTACCGCACCCTGGGCCGCGACGAGGCATCAAACTCGAGA ACAATGCCCTCCACCTTTTCCATGCAAAGAACAGCAGCCGCAGAACAAGTCGCCGTCACCAATTCGCCTGCGCCT TGGATCTACACAAGCGCATCTTTCGGAGAAGTGAGACTGGCTTTGGGCTGTATCTCAGAGGTGATCCGGTTTAGC CAGATCAAGGGCCTCTATTCCCATACCCGCGAATTGGCGGAGGTTGTGGTGCTGGCGGAAAAAGCGTACAAGGCT TGCAGAGGGATCGACATTGCCAGTCTTGTCCAACGCGGCATAAAGGAATGCATCTCAGGACTCGCCCAATGTCTT CCCGGTATCTTTTCTGAACTGATGCACATCGCCTTCCTTTCCGATGGCGCTAATCTGCAAAGCTCCCCGTTGGGA GATATTGTGCAACGCTGGTGGAACAGCAACCAGAAGGAAGAAGAAATCTCGACTCTGCGGGAGAAGGTGCAGAAG CACTTGGAGAATTTGTGCGGATGTCTATACTCGCTTAAATCATTCCATTGGTTGAAATGGGTGATGTTCCTATCC CTCGAGGACGGCTCTCACTTCAACCCCGAAATCCTGTTCCGCTTTCTGGAATCCCGGACACCGTCTCCTCGCCAT CTTCGAATCGATGAGGTCCTGATAATGGAACCTCTCGCTGGCCGGCCGCTGTCAGTGCCGACTCGATTTGTATCT TCGTTCGAGGACTTGCACCTTGTCCTCCAGCAAGGCTGCCGGGGAACTCTGACCAGCCGTTACATCGAGTGCAAC GAATACCAGTTGGACGAATCATCGACAAATCTGACTCTGGATTCCACGTGTTTCCAGCAGCTCTTCAAGCCAGGC AAACAATTTGAGGTCAGTATCCGAGTGGTAACCCACGGCACGAGGCTATCCGAGTGTCCACGCTGTGGGCATGAT AATGGTTATTTAGACGGACGCAGAGTCGACGGATGGGTGAGATGCGGTTCGTGCCTCGCTCAGTTTAACGCTGTC GAGTATCAGTATCCGTCAATTCCGACGCCCGAGGATGACGATGTCGGCATAACAGCTGAGGGACAGCACACTGAG GCCGCCTCTACAAGACATGACGCTCAGGCGGACTCCAGCTCCAGCGCCCCTGAACATAATACTACACCAAGACAA GCCGGCGGGCATCCTGAAGCTCGAAGCCCTTTGTCGGCTCCTACTTTCCAACAGGCGTCTCCGAATGGTCAGGGA GCTCCCATTGAAAACACTTTGGAAATCGATACTCCACGAGGCGGCATTTCCAGCGTCTCAGAGTAG |
| Length | 1416 |
| Sequence id | CopciAB_500026.T0 |
|---|---|
| Sequence |
>CopciAB_500026.T0 GCACCTACTACTATGGCCAGCCAGCAACCGCAACGCCAGCGGTCGATGGCCGCCTTCCAGAGCTGCTCCCAGTTC TATGCCATCGACAGCCACATCTGGGTCATCAATGGTGACTGTATCAACTACCGCACCCTGGGCCGCGACGAGGCA TCAAACTCGAGAACAATGCCCTCCACCTTTTCCATGCAAAGAACAGCAGCCGCAGAACAAGTCGCCGTCACCAAT TCGCCTGCGCCTTGGATCTACACAAGCGCATCTTTCGGAGAAGTGAGACTGGCTTTGGGCTGTATCTCAGAGGTG ATCCGGTTTAGCCAGATCAAGGGCCTCTATTCCCATACCCGCGAATTGGCGGAGGTTGTGGTGCTGGCGGAAAAA GCGTACAAGGCTTGCAGAGGGATCGACATTGCCAGTCTTGTCCAACGCGGCATAAAGGAATGCATCTCAGGACTC GCCCAATGTCTTCCCGGTATCTTTTCTGAACTGATGCACATCGCCTTCCTTTCCGATGGCGCTAATCTGCAAAGC TCCCCGTTGGGAGATATTGTGCAACGCTGGTGGAACAGCAACCAGAAGGAAGAAGAAATCTCGACTCTGCGGGAG AAGGTGCAGAAGCACTTGGAGAATTTGTGCGGATGTCTATACTCGCTTAAATCATTCCATTGGTTGAAATGGGTG ATGTTCCTATCCCTCGAGGACGGCTCTCACTTCAACCCCGAAATCCTGTTCCGCTTTCTGGAATCCCGGACACCG TCTCCTCGCCATCTTCGAATCGATGAGGTCCTGATAATGGAACCTCTCGCTGGCCGGCCGCTGTCAGTGCCGACT CGATTTGTATCTTCGTTCGAGGACTTGCACCTTGTCCTCCAGCAAGGCTGCCGGGGAACTCTGACCAGCCGTTAC ATCGAGTGCAACGAATACCAGTTGGACGAATCATCGACAAATCTGACTCTGGATTCCACGTGTTTCCAGCAGCTC TTCAAGCCAGGCAAACAATTTGAGGTCAGTATCCGAGTGGTAACCCACGGCACGAGGCTATCCGAGTGTCCACGC TGTGGGCATGATAATGGTTATTTAGACGGACGCAGAGTCGACGGATGGGTGAGATGCGGTTCGTGCCTCGCTCAG TTTAACGCTGTCGAGTATCAGTATCCGTCAATTCCGACGCCCGAGGATGACGATGTCGGCATAACAGCTGAGGGA CAGCACACTGAGGCCGCCTCTACAAGACATGACGCTCAGGCGGACTCCAGCTCCAGCGCCCCTGAACATAATACT ACACCAAGACAAGCCGGCGGGCATCCTGAAGCTCGAAGCCCTTTGTCGGCTCCTACTTTCCAACAGGCGTCTCCG AATGGTCAGGGAGCTCCCATTGAAAACACTTTGGAAATCGATACTCCACGAGGCGGCATTTCCAGCGTCTCAGAG TAGAGGTCATCCTTTCCAACCCCGTCGAGCAAGACCGCTCTCTCACAATCAGCATACCTTCTTCCCCTGAAGTCC TACCACCACTAAGTCCAGATTTGGAATACGAGTTTGTCCGTTTGGGAGACGTATCGCCATCAAGTAGCCAGCCAA AACCTCTGGCGACCTCTGGGCGGAAAGGCACACAATTCTCGCAAGATGACATTATTGTCGTGTTGATGGGACCCA CGGGGAGTGGAAAGAGCACGTTCATCAACTGCGCGATGAGGAGCCGTGTCGCTCGCGTCACACATTCGGTCCAAT CCTGCACCGAAAAGATTCACGTTTATGGTTGCCACCATCCAACCAAGCAAGACAGAAGAGTCTTTTTCATCGATA CACCGGGTTTTGAAGGCACTGCCATGAATGACCGCAAAACACTCAAGTCGATCGCCAAGTGGTTGAAGAATATGT ACGGGACAGGGGTCAGACTTAGCGGAATCCTTCTATTCCACATGATGACGGAGGCCCGTTGGAATGGGACGAAAG ACCACAACCTTGAAGTATTTCAAGAGATGTGCGGCCCAAAGGCCCTGAAAAACGTCGTCGTCGTTTCTACCGGCT GGGAGGAACTAGAGGAGGATGTCGGCTCGATTCGAGAGCAGTACCTTGTTGACAAGGTCTTGGCAGAGTCCATCT CGCAAGGCTGCCGATACGAACGCTTTAGCACCCAGGACTTCGACGCGGCCTGGGATATCATTAACCTTTTCCGAT GCAAGGGGAGGGCACTACTTATTCAGGAGGAGATGGCGAAGTGGAGGATGCCACTCAAGATGACCTCGGCATTCA AAGCTTTGGCTCGTTTCGGCCGGATGGGCAAATGAGAGACAGCAGCGATTTTTACGACTTTCCGTTTTAGCTTTT CCAGCTTTCTGGTGCTCTATGTAGATACTACACACATTATGGAAAATTGGAGCATTTTCCGTACC |
| Length | 2390 |
| Sequence id | CopciAB_500026.T0 |
|---|---|
| Sequence |
>CopciAB_500026.T0 GCACCTACTACTATGGCCAGCCAGCAACCGCAACGCCAGCGGTCGATGGCCGCCTTCCAGAGCTGCTCCCAGTTC TATGCCATCGACAGCCACATCTGGGTCATCAATGGTGACTGTATCAACTACCGCACCCTGGGCCGCGACGAGGCA TCAAACTCGAGAACAATGCCCTCCACCTTTTCCATGCAAAGAACAGCAGCCGCAGAACAAGTCGCCGTCACCAAT TCGCCTGCGCCTTGGATCTACACAAGCGCATCTTTCGGAGAAGTGAGACTGGCTTTGGGCTGTATCTCAGAGGTG ATCCGGTTTAGCCAGATCAAGGGCCTCTATTCCCATACCCGCGAATTGGCGGAGGTTGTGGTGCTGGCGGAAAAA GCGTACAAGGCTTGCAGAGGGATCGACATTGCCAGTCTTGTCCAACGCGGCATAAAGGAATGCATCTCAGGACTC GCCCAATGTCTTCCCGGTATCTTTTCTGAACTGATGCACATCGCCTTCCTTTCCGATGGCGCTAATCTGCAAAGC TCCCCGTTGGGAGATATTGTGCAACGCTGGTGGAACAGCAACCAGAAGGAAGAAGAAATCTCGACTCTGCGGGAG AAGGTGCAGAAGCACTTGGAGAATTTGTGCGGATGTCTATACTCGCTTAAATCGTAAGAATCGGTATTAAATTTT AATGCCCTGGCCGTACTGACTGCAATTCATAGATTCCATTGGTTGAAATGGGTGATGTTCCTATCCCTCGAGGAC GGCTCTCACTTCAACCCCGAAATCCTGTTCCGCTTTCTGGAATCCCGGACACCGTCTCCTCGCCATCTTCGAATC GATGAGGTCCTGATAATGGAACCTCTCGCTGGCCGGCCGCTGTCAGTGCCGACTCGATTTGTATCTTCGTTCGAG GTACGCTTGCTGACACGTAATGAGATCTATAGCTCACCAACAGCATTCACAGGACTTGCACCTTGTCCTCCAGCA AGGCTGCCGGGGAACTCTGACCAGCCGTTACATCGAGTGCAACGAATACCAGTTGGACGAATCATCGACAAATCT GACTCTGGATTCCACGTGTTTCCAGCAGCTCTTCAAGCCAGGCAAACAATTTGAGGTCAGTATCCGAGTGGTAAC CCACGGCACGAGGCTATCCGAGTGTCCACGCTGTGGGCATGATAATGGTTATTTAGACGGACGCAGAGTCGACGG ATGGGTGAGATGGTAAGTTTAACTGCGTCAACAATCTCAAATCGGTTCTTTACAAGAGTGCGCGAAGCGGTTCGT GCCTCGCTCAGTTTAACGCTGTCGAGTATCAGTATCCGTCAATTCCGACGCCCGAGGATGACGATGTCGGCATAA CGTATGTAACTCCTCCACTACATTCCTCTGGTCGGTATTGAAACGATAACAGAGCTGAGGGACAGCACACTGAGG CCGCCTCTACAAGACATGACGCTCAGGCGGACTCCAGCTCCAGCGCCCCTGAACATAATACTACACCAAGACAAG CCGGCGGGCATCCTGAAGCTCGAAGCCCTTTGTCGGCTCCTACTTTCCAACAGGCGTCTCCGAATGGTCAGGGAG CTCCCATTGAAAACACTTTGGAAATCGATACTCCACGAGGCGGCATTTCCAGCGTCTCAGAGTAGAGGTCATCCT TTCCAACCCCGTCGAGCAAGACCGCTCTCTCACAATCAGCATACCTTCTTCCCCTGAAGTCCTACCACCACTAAG TCCAGATTTGGAATACGAGTTTGTCCGTTTGGGAGACGTATCGCCATCAAGTAGCCAGCCAAAACCTCTGGCGAC CTCTGGGCGGAAAGGCACACAATTCTCGCAAGATGACATTATTGTCGTGTTGGTACTTTCACAAGCCTGATTTCC GAAACACCTTACTCACGTAGATCCAAGGTTGATGGGACCCACGGGGAGTGGAAAGAGCACGGTACGTGGCCCTAA TCATTCTCCTGGCCTATTAGTGTTCTCTGACAATCTGTATCTCGACAGTTCATCAACTGCGCGATGAGGAGCCGT GTCGCTCGCGTCACACATTCGGTCCAATCCTGCACCGAAAAGATTCACGTTTATGGTTGCCACCATCCAACCAAG CAAGACAGAAGAGTCTTTTTCATCGATACACCGGGTTTTGAAGGCACTGCCATGAATGACCGCAAAACACTCAAG TCGATCGCCAAGTGGTTGAAGAATATGTTTGTACCTTTGCCTCCTTATTCTATACCTCTCGCTGACTAGATCACG CTTGACGCAGGTACGGGACAGGGGTCAGACTTAGCGGAATCCTTCTATTCCACATGATGACGGAGGCCCGTTGGA ATGGGACGAAAGACCACAACCTTGAAGTATTTCAAGAGATGTGCGGCCCAAAGGCCCTGAAAAACGTCGTCGTCG TTTCTACCGGCTGGGAGGAACTAGAGGAGGATGTCGGCTCGATTCGAGAGCAGTACCTTGTTGACAAGGTCTTGG CAGAGTCCATCTCGCAAGGCTGCCGATACGAACGCTTTAGCACCCAGGACTTCGACGCGGCCTGGGATATCATTA ACCTTTTCCGATGCAAGGGGAGGGCACTACTTATTCAGGAGGAGATGGCGAAGTGGAGGATGCCACTCAAGATGA CCTCGGCATTCAAAGCTTTGGCTCGTTTCGGCCGGATGGGCAAATGAGAGACAGCAGCGATTTTTACGACTTTCC GTTTTAGCTTTTCCAGCTTTCTGGTGCTCTATGTAGATACTACACACATTATGGAAAATTGGAGCATTTTCCGTA CC |
| Length | 2777 |