CopciAB_500402
Coprinopsis cinerea A43mutB43mut pab1-1 #326

General data

Systematic name CopciAB_500402 Strain Coprinopsis cinerea Okayama 7
Standard name - Synonyms 500402
Uniprot id Functional description alpha/beta hydrolase fold
Location scaffold_7:638484..639868 Strand -
Gene length (nt) 1385 Transcript length (nt) 1270
CDS length (nt) 1164 Protein length (aa) 387

Reciprocal best hits in model fungi

Strain name Gene / Protein name

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
Agrocybe aegerita Agrae_CAA7262899 48.9 3.38E-106 347
Ganoderma sp. 10597 SS1 v1.0 Gansp1_84880 46.5 4.766E-100 329
Agaricus bisporus var bisporus (H97) Agabi_varbisH97_2_207012 46.9 4.153E-99 326
Pleurotus ostreatus PC15 PleosPC15_2_1045533 45.4 5.196E-98 323
Pleurotus eryngii ATCC 90797 Pleery1_1450099 44.9 2.986E-97 321
Pleurotus ostreatus PC9 PleosPC9_1_58363 45.2 1.214E-96 319
Agaricus bisporus var. burnettii JB137-S8 Agabi_varbur_1_74194 46.7 2.467E-96 318
Schizophyllum commune H4-8 Schco3_1124648 45.3 4.562E-93 309
Lentinula edodes NBRC 111202 Lenedo1_465944 42 4.672E-91 303
Lentinula edodes W1-26 v1.0 Lentinedodes1_14423 42.3 1.024E-90 302
Hypsizygus marmoreus strain 51987-8 Hypma_RDB14647 46 7.228E-76 259
Grifola frondosa Grifr_OBZ71192 50.1 1.396E-60 214
Lentinula edodes B17 Lened_B_1_1_9020 37.9 1.27E-59 211

Expression

Name Summary Attribution Assay type
Carbon metabolism Transcriptional changes along alternative morphogenetic paths of C. cinerea Xie et al. 2020 RNA-Seq
Sample Mean cpm SD cpm Se of mean
sclerotia 1.6263 0.7851 0.4533
oidia 2.59 1.2353 0.7132
vegetative_mycelium 2.8289 0.6819 0.3937
primordia 8.2816 0.4139 0.2389
hyphal_knot 2.389 0.1629 0.094
young_fruiting_body 24.713 1.8822 1.0867
Complex carbon sources 1 (long incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control - glucose 4.5955 1.3315 0.7687
Wheat bran 5.0318 1.5255 0.8807
Horse manure 4.1921 0.0367 0.0212
Oak leaves 4.6897 1.1713 0.6763
Hay 4.0454 0.839 0.4844
Corn stalk 4.1888 1.2538 0.7239
Pectine 3.5974 0.8766 0.5061
Microcrystalline cellulose 5.6385 1.5665 0.9044
Xylose 3.5099 0.5503 0.3177
Cellobiose 4.2719 0.5288 0.3053
Lignin 6.1978 4.26 2.4595
Apple peels 2.4552 0.2649 0.1529
Coprinopsis challenged with bacteria Transcriptional response to Bacillus subtilis and Escherichia coli. Kombrink et al. 2018 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control 3.8684 0.1638 0.0946
Bsubtilis 3.6493 0.5085 0.2936
Ecoli 6.2473 0.1797 0.1037
Early development 1 Time series expression profiling of basidiospore and oidium germination Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
BS 0h 0.2886 0.1492 0.0861
BS 4h 0.5403 0.2037 0.1176
BS 8h 0.4091 0.0955 0.0551
BS 12h 0.2534 0.1302 0.0752
Oidia 0 h 1.5321 0.9412 0.5434
Oidia 18 h 0.5296 0.2903 0.1676
Sclerotia 0.8033 0.5164 0.2981
Early development 2 Time series expression profiling of mycelial growth, light induction and fruiting body initiation. Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
DM 12h 0.4331 0.1051 0.0607
DM 36h 0.1394 0.1769 0.1021
DM 60h 0.7295 0.5328 0.3076
DM 84h 0.4937 0.1329 0.0767
DM 108h 0.3784 0.0086 0.0049
DM 132h 0.8094 0.5411 0.3124
DM 156hAE 0.8813 0.4576 0.2642
ELI1hAE 0.5135 0.3585 0.207
ELI2hAE 0.4346 0.4309 0.2488
LI2hAE 0.3011 0.5216 0.3011
LI6hAE 0.3756 0.3478 0.2008
LI12hAE 0.3293 0.2499 0.1443
LI18hAE 0.4502 0.4146 0.2394
LI 24hAE 1.0257 0.2814 0.1625
DM 156hAM 0.5904 0.1334 0.077
ELI1hAM 0.1862 0.1808 0.1044
ELI2hAM 0.3002 0.129 0.0745
LI2hAM 0.3631 0.0353 0.0204
LI6hAM 0.4219 0.3417 0.1973
LI12hAM 0.5544 0.5236 0.3023
LI18hAM 0.5279 0.1489 0.086
LI 24hAM 0.9217 0.2373 0.137
LI 24hHK 0.983 0.4459 0.2574
L/D 6h 2.1369 0.1641 0.0947
L/D 12h 2.8543 0.8772 0.5064
L/D 18h 2.9884 1.4344 0.8282
L/D 24h 2.5544 0.4031 0.2328
Fruiting body development RNA-Seq analysis of fruiting body development Krizsan et al. 2019 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Vegetative mycelium 2.0693 0.2717 0.1568
Hyphal knots 5.6113 0.6888 0.3977
Primordium 1 5.6472 0.7676 0.4432
Primordium 2 4.7323 0.6443 0.372
Young Fruiting body cap 9.4825 1.5322 0.8846
Younf fruiting body gill 11.1909 8.3409 4.8156
Young fruiting body stipe 15.228 6.5755 3.7963
Mature fruiting body cap_gill 2.1252 0.7327 0.423
Mature fruiting body stipe 3.782 0.1268 0.0732
Nitrogen sources (12h incubation) Expression profiling on diverse nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Complete medium - control 1.4766 0.283 0.1634
NH4NO3 3.004 0.9535 0.5505
Proline 2.3821 0.4161 0.2402
Tryptophan 2.1222 0.9857 0.5691
Isoleucin 2.5834 0.9494 0.5481
Arginine 2.2899 0.6091 0.3517
Metionine 1.8137 0.2985 0.1724
NaNO3 1.4386 0.4992 0.2882
Plant biomass (12h incubation) Expression profiling on diverse plant biomasses as carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 1.4766 0.283 0.1634
Citrus peel 0.8627 0.51 0.2944
Poplar leaves 1.1548 0.6136 0.3543
Typha leaves 1.2481 0.8753 0.5053
Overwintered Salix leaves 1.5383 0.3673 0.2121
Reed flowering 1.6391 0.5208 0.3007
Tigernut 1.2681 0.3174 0.1832
Energy cane 1.9614 0.6057 0.3497
Guar gum 2.3695 1.4708 0.8492
Apple peels 1.1104 0.3032 0.175
Cellobiose 1.4773 0.1915 0.1106
Corn stalk 2.5222 0.7108 0.4104
Horse manure 1.6189 0.1945 0.1123
Lignin 1.1202 0.925 0.5341
Microcrystalline cellulose 1.0006 0.2884 0.1665
Oak leaves 2.0097 0.0852 0.0492
Pectin esterified 1.6959 0.6891 0.3979
Poplar sawdust 2.2514 0.5559 0.3209
Wheat bran 2.6683 0.8651 0.4995
Chlamydomonas reinhardtii 1.9991 0.2844 0.1642
Vertatryl alcohol 1.3428 0.2464 0.1423
Furfural 1.2421 0.4222 0.2438
Autoclaved mycelium 1.2454 0.6252 0.361
Simple and complex carbon and nitrogen sources Expression profiling on diverse complex carbon and nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 2.0157 0.1337 0.0772
Ribose 2.0427 0.5526 0.319
Mannose 2.3989 0.6545 0.4628
Fructose 2.0836 0.4715 0.2722
Arabinose 2.3482 0.2992 0.1728
Xylose 1.3632 0.3933 0.2271
Galacturonic acid 2.2499 0.5401 0.3118
Rhamnogalacturonan 1.7721 0.7627 0.4403
Pectin esterified 1.8038 0.5442 0.3142
Polygalacturonic acid 2.2246 0.5391 0.3113
Sodium acetate 1.9031 0.5175 0.2988
No nitrogen 2.0164 0.6592 0.3806
BSA 1.9827 0.2328 0.1344
Glutamine 1.4715 0.4288 0.2475
No phosphate 1.0008 0.3499 0.202
No carbon 2.4706 0.3636 0.2571
No sulphur 1.3437 0.3631 0.2096
Simple and complex carbon sources (12h incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 1.4766 0.283 0.1634
Amylose 3.8053 0.3671 0.212
Fucose 2.5697 0.2565 0.1481
Galactose 4.1386 0.2934 0.1694
Lactose 4.5551 1.4518 0.8382
Maltose 3.3129 0.5948 0.3434
Mannitol 4.1279 1.5165 0.8756
Rhamnose 2.8308 0.6016 0.3473
Sorbitol 3.9615 0.6889 0.3977
Trehalose 3.6762 1.4346 0.8283
Glycerol 3.4891 1.4388 0.8307
Glucuronic acid 4.9507 1.1251 0.6496
Arabinan 2.6196 0.628 0.3626
Galactan 1.2101 0.408 0.2355
Galactomannan 2.0241 0.935 0.5398
Glucan 2.1716 0.9074 0.5239
Xylan 2.3869 0.8037 0.464
Xyloglucan 3.7362 0.9618 0.5553
Arabinogalactan 2.5612 0.471 0.2719
Pectin 2.3295 0.7648 0.4416
Rhamnogalacturonan 1.3451 0.6747 0.3896
Polygalacturonic acid 4.052 1.3189 0.7615
Mannan 2.4138 0.9153 0.5284
Amylopectin 2.1233 1.2423 0.7172
Inulin 3.3183 0.4221 0.2437
BSA 0.6167 0.3553 0.2051
Starvation induced by water agar transfer Expression profiling on starvation induced by transfer to water agar Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Control 0.7295 0.5328 0.3076
2h WAT 0.7824 0.3379 0.1951
4h WAT 0.042 0.0728 0.042
8h WAT 0.7552 0.5934 0.3426
16h WAT 0.2224 0.1398 0.0807
24h WAT 0.5832 0.4384 0.2531
WAT hyphal knot -30h 0.2414 0.0575 0.0332
WAT hyphal knot -22h 0.193 0.2636 0.1522
WAT hyphal knot -15h 0.0405 0.0701 0.0405
WAT hyphal knot -7.5h 0.1553 0.0337 0.0194
WAT hyphal knot 0.1124 0.0997 0.0576
WAT hyphal knot +7.5h 0.5364 0.4699 0.2713
Straw time series Time series expression profiling on straw as a carbon source Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 1.1272 0.615 0.3551
Straw 3h 1.2893 0.6528 0.3769
Straw 6h 1.7232 0.9579 0.5531
Straw 12h 1.5711 0.767 0.4428
Straw 24h 1.6887 0.7473 0.4315
Stress conditions 1 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 0.519 0.1058 0.0611
Frost (-20C, 30min) 0.3608 0.1994 0.1151
Heat shock (47C, 2h) 0.0729 0.1023 0.0591
High CO2 0.5064 0.3112 0.1797
Drought (4% agar, 12h) 0.3135 0.2902 0.1676
Oxidative (1mM H2O2, 3h) 0.42 0.4217 0.2435
Acidic (pH4, 3h) 0.1784 0.2074 0.1198
Alkaline (pH9, 3h) 0.5515 0.3324 0.1919
Osmotic (sorbitol 2h) 0.2839 0.1316 0.076
CongoRed (3h) 0.5938 0.2924 0.1688
Cobalt chloride control 0.6993 0.1754 0.1012
Cobalt chloride 2mM 0.2458 0.2112 0.1219
Stress conditions 2 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 0.0498 0.0863 0.0498
Cold stimulation 0.3698 0.184 0.1062
Scratched surface 0.2346 0.208 0.1201
Ca2+, 200mM, 24h 0.2529 0.2387 0.1378
Cu2+, 2mM, 6h 0.4323 0.2207 0.1274
Voriconazole 0.2165 0.1893 0.1093
Trichoderma interaction, early 0.6172 0.1315 0.0759
Trichoderma interaction 60h 0 0 0
Cobalt chloride 2mM repeat 0.262 0.2349 0.1356
Hypoxia 0.245 0.4244 0.245
Hypoxia control 0.1471 0.2547 0.1471
Protoplastation control 0.4942 0.2378 0.1682
Protoplastation 3.5h 0.1939 0.2742 0.1939
Protoplastation 1.5h 0.4439 0.6277 0.4439

General data

Systematic name -
Protein id CopciAB_500402.T0
Description alpha/beta hydrolase fold

Annotation summary

0 100 200 300 387

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
Pfam PF07859 alpha/beta hydrolase fold IPR013094 44 170

SignalP

Prediction Start End Score
No records

Transmembrane domains

Domain n Start End Length
No records

InterPro

Accession Description
IPR029058 Alpha/Beta hydrolase fold
IPR013094 Alpha/beta hydrolase fold-3

GO

Go id Term Ontology
GO:0016787 hydrolase activity MF

KEGG

KEGG Orthology
No records

EggNOG

COG category Description
S alpha/beta hydrolase fold

CAZy

Class Family Subfamily
CE CE10

Transcription factor

Group
No records

Conservation of CopciAB_500402 across fungi.

Arrow shows the origin of gene family containing CopciAB_500402.

Protein

Sequence id CopciAB_500402.T0
Sequence >CopciAB_500402.T0
MSAMSSEPLTVTYKRRGDLNILSDVWQPESGPTPNGDKITVPAVVFFHGGGLTVGNRRSWFPEWLCKRFTKLGYL
FISADYSLIPPATGHDIVEDIKDLWSFILDPHNIFSFVNGGTQKDFVVQPDKIVVAGTSAGGLCAYLCAMHCVDP
PPVALLSIYGMGGDFFTPHYLHEKHAPFFRGRELLDPSEFQEFVYPFQEGDSTFVSDSPLSHHPPTHPIPGYPSN
PRMLLARLYLQLGQFLDYYTGQHSPSLSRQLREIYDSYHQEHTQPSTLKGASPPLDGGDDDSSRLWEAIESCLGQ
HRNLFPQVNVVKGEGRWPRTVFLHGTADTAVPIGESRSMESQLKAIGVPTQLFEVEEEEHSFDLVPNAEERFGVI
FDKVTAFLHGVE
Length 387

Coding

Sequence id CopciAB_500402.T0
Sequence >CopciAB_500402.T0
ATGTCAGCGATGTCTTCTGAGCCCCTCACGGTCACGTACAAAAGAAGAGGAGACTTGAACATTCTTTCGGACGTA
TGGCAACCTGAAAGCGGACCGACGCCGAACGGGGACAAGATTACAGTTCCGGCAGTGGTGTTCTTCCATGGCGGT
GGGCTGACAGTCGGGAATAGACGTAGCTGGTTTCCTGAGTGGTTATGTAAACGTTTCACCAAGCTTGGATATCTT
TTTATTTCAGCGGACTACAGTCTGATCCCTCCGGCAACTGGACATGACATCGTGGAGGACATCAAGGACTTGTGG
TCCTTCATACTCGATCCTCACAATATCTTCTCCTTCGTAAATGGGGGGACGCAGAAGGATTTTGTCGTGCAGCCG
GACAAAATCGTCGTAGCGGGAACAAGCGCTGGTGGTCTTTGTGCCTATCTGTGCGCGATGCACTGTGTTGATCCT
CCTCCCGTGGCGCTGCTCTCGATCTACGGAATGGGTGGAGATTTCTTCACGCCTCACTATCTACATGAGAAACAT
GCACCGTTCTTCCGAGGAAGGGAGCTTCTCGATCCCTCCGAGTTCCAGGAGTTTGTGTATCCGTTCCAAGAGGGG
GACTCAACATTCGTATCTGACTCACCCCTCTCACACCACCCTCCAACCCACCCCATCCCCGGCTACCCTTCCAAT
CCCCGGATGCTTCTCGCACGGCTGTACCTGCAGCTCGGTCAATTTCTGGATTACTACACAGGCCAGCATTCACCC
AGTCTAAGCCGCCAGCTCCGAGAGATTTATGACTCTTATCATCAGGAACATACCCAGCCTTCGACATTGAAGGGT
GCGTCACCTCCCCTTGACGGGGGAGATGACGATTCCTCTCGGCTTTGGGAGGCAATCGAGTCATGCCTTGGTCAA
CATCGAAACCTGTTCCCGCAGGTTAACGTTGTGAAAGGGGAAGGTCGGTGGCCGAGGACGGTCTTCCTTCATGGA
ACAGCAGATACGGCTGTCCCGATAGGCGAATCGAGGAGCATGGAAAGTCAACTGAAGGCAATTGGAGTGCCTACC
CAGCTTTTCGAAGTTGAAGAAGAGGAGCATTCCTTTGATCTAGTACCTAACGCAGAGGAAAGGTTTGGCGTTATT
TTTGATAAAGTGACGGCCTTCCTACATGGTGTAGAGTAA
Length 1164

Transcript

Sequence id CopciAB_500402.T0
Sequence >CopciAB_500402.T0
ATCTTCCTTCTCTTCATTCACATCCATGTCAGCGATGTCTTCTGAGCCCCTCACGGTCACGTACAAAAGAAGAGG
AGACTTGAACATTCTTTCGGACGTATGGCAACCTGAAAGCGGACCGACGCCGAACGGGGACAAGATTACAGTTCC
GGCAGTGGTGTTCTTCCATGGCGGTGGGCTGACAGTCGGGAATAGACGTAGCTGGTTTCCTGAGTGGTTATGTAA
ACGTTTCACCAAGCTTGGATATCTTTTTATTTCAGCGGACTACAGTCTGATCCCTCCGGCAACTGGACATGACAT
CGTGGAGGACATCAAGGACTTGTGGTCCTTCATACTCGATCCTCACAATATCTTCTCCTTCGTAAATGGGGGGAC
GCAGAAGGATTTTGTCGTGCAGCCGGACAAAATCGTCGTAGCGGGAACAAGCGCTGGTGGTCTTTGTGCCTATCT
GTGCGCGATGCACTGTGTTGATCCTCCTCCCGTGGCGCTGCTCTCGATCTACGGAATGGGTGGAGATTTCTTCAC
GCCTCACTATCTACATGAGAAACATGCACCGTTCTTCCGAGGAAGGGAGCTTCTCGATCCCTCCGAGTTCCAGGA
GTTTGTGTATCCGTTCCAAGAGGGGGACTCAACATTCGTATCTGACTCACCCCTCTCACACCACCCTCCAACCCA
CCCCATCCCCGGCTACCCTTCCAATCCCCGGATGCTTCTCGCACGGCTGTACCTGCAGCTCGGTCAATTTCTGGA
TTACTACACAGGCCAGCATTCACCCAGTCTAAGCCGCCAGCTCCGAGAGATTTATGACTCTTATCATCAGGAACA
TACCCAGCCTTCGACATTGAAGGGTGCGTCACCTCCCCTTGACGGGGGAGATGACGATTCCTCTCGGCTTTGGGA
GGCAATCGAGTCATGCCTTGGTCAACATCGAAACCTGTTCCCGCAGGTTAACGTTGTGAAAGGGGAAGGTCGGTG
GCCGAGGACGGTCTTCCTTCATGGAACAGCAGATACGGCTGTCCCGATAGGCGAATCGAGGAGCATGGAAAGTCA
ACTGAAGGCAATTGGAGTGCCTACCCAGCTTTTCGAAGTTGAAGAAGAGGAGCATTCCTTTGATCTAGTACCTAA
CGCAGAGGAAAGGTTTGGCGTTATTTTTGATAAAGTGACGGCCTTCCTACATGGTGTAGAGTAATCTGGCTCCTC
CAGGACTCCAGCGGTTTCCTGAAACTTTCAATGTTTTTCCGAATCTAAGAATAGAGATGATTCGCCGAGA
Length 1270

Gene

Sequence id CopciAB_500402.T0
Sequence >CopciAB_500402.T0
ATCTTCCTTCTCTTCATTCACATCCATGTCAGCGATGTCTTCTGAGCCCCTCACGGTCACGTACAAAAGAAGAGG
AGACTTGAACATTCTTTCGGACGTATGGCAACCTGAAAGCGGACCGACGCCGAACGGGGACAAGATTACAGTTCC
GGCAGTGGTGTTCTTCCATGGCGGTGGGCTGACAGTCGGGAATAGACGTAGCTGGTTTCCTGAGTGGTTATGTAG
TATGTCTTTAAAATCGCATCAGGGAACGGTTTGAATCCTCACATCTCAAGAAAGAACGTTTCACCAAGCTTGGAT
ATCTTTTTATTTCAGCGGACTACAGTCTGATCCCTCCGGCAACTGGACATGACATCGTGGAGGACATCAAGGACT
TGTGGTCCTTCATACTCGATCCTCACAATATCTTCTCCTTCGTAAATGGGGGGACGCAGAAGGATTTTGTCGTGC
AGCCGGACAAAATCGTCGTAGCGGGAACAAGCGCTGGTGGTCTTTGTGCCTATCTGTGCGCGATGCACTGTGTTG
ATCCTCCTCCCGTGGCGCTGCTCTCGATCTACGGAATGGGTGGAGATTTCTTCGTGAGTTATACTTTCGCTGTCC
GTTACTGCATGGTGATTGATGATACGCTGGCGAGACAGACGCCTCACTATCTACATGAGAAACATGCACCGTTCT
TCCGAGGAAGGGAGCTTCTCGATCCCTCCGAGTTCCAGGAGTTTGTGTATCCGTTCCAAGAGGGGGACTCAACAT
TCGTATCTGACTCACCCCTCTCACACCACCCTCCAACCCACCCCATCCCCGGCTACCCTTCCAATCCCCGGATGC
TTCTCGCACGGCTGTACCTGCAGCTCGGTCAATTTCTGGATTACTACACAGGCCAGCATTCACCCAGTCTAAGCC
GCCAGCTCCGAGAGATTTATGACTCTTATCATCAGGAACATACCCAGCCTTCGACATTGAAGGGTGCGTCACCTC
CCCTTGACGGGGGAGATGACGATTCCTCTCGGCTTTGGGAGGCAATCGAGTCATGCCTTGGTCAACATCGAAACC
TGTTCCCGCAGGTTAACGTTGTGAAAGGGGAAGGTCGGTGGCCGAGGACGGTCTTCCTTCATGGAACAGCAGATA
CGGCTGTCCCGATAGGCGAATCGAGGAGCATGGAAAGTCAACTGAAGGCAATTGGAGTGCCTACCCAGCTTTTCG
AAGTTGAAGAAGAGGAGCATTCCTTTGATCTAGTACCTAACGCAGAGGAAAGGTTTGGCGTTATTTTTGATAAAG
TGACGGCCTTCCTACATGGTGTAGAGTAATCTGGCTCCTCCAGGACTCCAGCGGTTTCCTGAAACTTTCAATGTT
TTTCCGAATCTAAGAATAGAGATGATTCGCCGAGA
Length 1385