Systematic name | CopciAB_500888 | Strain | Coprinopsis cinerea Okayama 7 |
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Standard name | - | Synonyms | 500888 |
Uniprot id | Functional description | ||
Location | scaffold_12:567411..569320 | Strand | - |
Gene length (nt) | 1910 | Transcript length (nt) | 1800 |
CDS length (nt) | 960 | Protein length (aa) | 319 |
Strain name | Gene / Protein name |
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Strain name | Gene / Protein name | Pident | E-value | Bits |
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0 |
Name | Summary | Attribution | Assay type | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Carbon metabolism | Transcriptional changes along alternative morphogenetic paths of C. cinerea | Xie et al. 2020 | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Complex carbon sources 1 (long incubation) | Expression profiling on diverse complex carbon sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Coprinopsis challenged with bacteria | Transcriptional response to Bacillus subtilis and Escherichia coli. | Kombrink et al. 2018 | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Early development 1 | Time series expression profiling of basidiospore and oidium germination | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Early development 2 | Time series expression profiling of mycelial growth, light induction and fruiting body initiation. | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Fruiting body development | RNA-Seq analysis of fruiting body development | Krizsan et al. 2019 | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Nitrogen sources (12h incubation) | Expression profiling on diverse nitrogen sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Plant biomass (12h incubation) | Expression profiling on diverse plant biomasses as carbon sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Simple and complex carbon and nitrogen sources | Expression profiling on diverse complex carbon and nitrogen sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Simple and complex carbon sources (12h incubation) | Expression profiling on diverse complex carbon sources. | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Starvation induced by water agar transfer | Expression profiling on starvation induced by transfer to water agar | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Straw time series | Time series expression profiling on straw as a carbon source | Hegedus et al. | RNA-Seq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Stress conditions 1 | Expression profiling under various stress conditions | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Stress conditions 2 | Expression profiling under various stress conditions | Hegedus et al. | QuantSeq | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Systematic name | - |
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Protein id | CopciAB_500888.T0 |
Description |
Analysis | Signature accession | Signature description | InterPro Accession | Start | End |
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No records |
Prediction | Start | End | Score |
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No records |
Domain n | Start | End | Length |
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No records |
Accession | Description |
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IPR000719 | Protein kinase domain |
IPR011009 | Protein kinase-like domain superfamily |
Go id | Term | Ontology |
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GO:0004672 | protein kinase activity | MF |
GO:0005524 | ATP binding | MF |
GO:0006468 | protein phosphorylation | BP |
KEGG Orthology |
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No records |
COG category | Description |
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No records |
Class | Family | Subfamily |
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No records |
Group |
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No records |
Arrow shows the origin of gene family containing CopciAB_500888.
Sequence id | CopciAB_500888.T0 |
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Sequence |
>CopciAB_500888.T0 MHLARVLPTMAIQTLPRYLRLSFLPSRFAVLPSTRHVPSRSSLNRRNLTASSRLQEHGDTTQRRGNGLSMPRHSS KDSGRPLSPGPSSEVDSLRYFPAQLNTVLRGNPKITVIRKLGSGPRSSTWLVKHIESSTYSALKIYTAAASREER GLAEEKRLVELRDVMAYSSGYSKHPCHFSTWWEESTRGRHLCYLVEPYCGLSLEDVRNGDPMGRLPIRTVQFVFN ELVEKLSEVHGFADGMHGSLSAENAVFWTWADVKYLKPHLSLPEGSTIDGVAKIKAQPLMQVENPDPKSTDDLPT VMKTWQFVFRGFEYALFGF |
Length | 319 |
Sequence id | CopciAB_500888.T0 |
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Sequence |
>CopciAB_500888.T0 ATGCATCTAGCTAGGGTGCTTCCAACAATGGCCATCCAGACACTTCCTCGATACCTGCGTCTATCTTTTTTGCCC TCTCGTTTCGCAGTGCTTCCAAGCACCCGTCATGTCCCATCCAGGTCCTCGTTGAATCGCCGCAACCTGACAGCA AGCTCAAGGCTTCAAGAACATGGAGATACCACGCAAAGACGTGGCAATGGCCTCTCAATGCCCAGACATAGCTCC AAGGACTCTGGACGACCACTCAGCCCAGGCCCCAGCTCCGAAGTCGACAGCCTCAGATACTTCCCTGCCCAGCTC AACACCGTTCTTCGTGGCAATCCCAAAATCACAGTAATCAGGAAACTAGGCTCTGGCCCTCGTTCCTCAACATGG CTCGTGAAACACATCGAATCCAGTACCTACTCAGCGCTCAAAATCTACACTGCCGCCGCTTCTCGGGAAGAACGA GGACTGGCAGAAGAGAAAAGGTTAGTTGAGTTGAGGGACGTGATGGCTTACAGCAGCGGCTATTCCAAGCATCCC TGCCATTTCAGTACGTGGTGGGAGGAGAGCACCCGCGGACGTCATCTGTGTTACCTTGTGGAACCCTATTGCGGG TTATCGCTCGAGGACGTCAGAAATGGAGACCCGATGGGCCGGCTGCCTATTCGTACCGTCCAATTCGTCTTCAAT GAACTAGTGGAGAAGCTGAGCGAAGTTCATGGGTTCGCGGATGGGATGCACGGGTCCCTCTCGGCAGAGAACGCT GTGTTCTGGACCTGGGCCGACGTTAAATACCTCAAGCCACACCTCTCTCTGCCAGAAGGGAGTACTATCGACGGA GTTGCGAAGATAAAAGCCCAGCCATTAATGCAAGTCGAGAATCCCGACCCTAAATCGACGGACGACCTTCCAACC GTGATGAAAACCTGGCAATTCGTTTTCCGCGGTTTCGAATATGCACTCTTCGGTTTCTGA |
Length | 960 |
Sequence id | CopciAB_500888.T0 |
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Sequence |
>CopciAB_500888.T0 GGCTAATCCTCGAACTCCTCGATGCAACGGCCCTGCACTTCTAGGGGTATGAAAGCAAACTTGGAAATGAGAAAG TCCTTCCCTGGGCAGCTCCTCGAGAATCAATACAGCGCCGTTGTCTTCGGCGTCACTCGATCAGAATAGCGCCCA CTGTCAACCTACACAACCTGGACAACTCCAGTTTGTGTGTTAACTTCCATGCATCTAGCTAGGGTGCTTCCAACA ATGGCCATCCAGACACTTCCTCGATACCTGCGTCTATCTTTTTTGCCCTCTCGTTTCGCAGTGCTTCCAAGCACC CGTCATGTCCCATCCAGGTCCTCGTTGAATCGCCGCAACCTGACAGCAAGCTCAAGGCTTCAAGAACATGGAGAT ACCACGCAAAGACGTGGCAATGGCCTCTCAATGCCCAGACATAGCTCCAAGGACTCTGGACGACCACTCAGCCCA GGCCCCAGCTCCGAAGTCGACAGCCTCAGATACTTCCCTGCCCAGCTCAACACCGTTCTTCGTGGCAATCCCAAA ATCACAGTAATCAGGAAACTAGGCTCTGGCCCTCGTTCCTCAACATGGCTCGTGAAACACATCGAATCCAGTACC TACTCAGCGCTCAAAATCTACACTGCCGCCGCTTCTCGGGAAGAACGAGGACTGGCAGAAGAGAAAAGGTTAGTT GAGTTGAGGGACGTGATGGCTTACAGCAGCGGCTATTCCAAGCATCCCTGCCATTTCAGTACGTGGTGGGAGGAG AGCACCCGCGGACGTCATCTGTGTTACCTTGTGGAACCCTATTGCGGGTTATCGCTCGAGGACGTCAGAAATGGA GACCCGATGGGCCGGCTGCCTATTCGTACCGTCCAATTCGTCTTCAATGAACTAGTGGAGAAGCTGAGCGAAGTT CATGGGTTCGCGGATGGGATGCACGGGTCCCTCTCGGCAGAGAACGCTGTGTTCTGGACCTGGGCCGACGTTAAA TACCTCAAGCCACACCTCTCTCTGCCAGAAGGGAGTACTATCGACGGAGTTGCGAAGATAAAAGCCCAGCCATTA ATGCAAGTCGAGAATCCCGACCCTAAATCGACGGACGACCTTCCAACCGTGATGAAAACCTGGCAATTCGTTTTC CGCGGTTTCGAATATGCACTCTTCGGTTTCTGAACACCAGCTCAGGTTGGTTCCGGCCTCAAACCACACCCGCAA CATGACTACGCGTCTGCACCAGAGACACTCTTATCCAATGCAACCTGCTCGTCCCAAACCGATATTTGGATGCTA GGAGTGATGGTGCTCCTTCAATTCATTTCTAGGCAGTGTCGCCCAGCTCACCGACGCTTACCTTGCAGATATTCA AGCTCTTGACAGGTCGTGATCTCTTCACCTCCACTGGTACACCTCTGGAACGCTTCACCGAAATACGCCATATCC TCGAGGAGGACGATATCCCGAGTGGTTAATGCGACGACCCTTCCCTCAAAGGACAAGTTGTCCCAAAGACATCCT CGGGAGGCACCAGACCCAGACTTGAACAACTCCTTGCGGACGTCCTACCCCTACATGAAGTCCCAGGAACAGTGA AGCTCTTGAAGAAGTGCCTACGTATTAACCCGGACAACCGACCTTCTGCGTTAGAGATGGAGGACGACGAGTGGG TGGGTTCTCTCCCACTGCTCGTGTGGGTATCCCCATGATTAACGATGAGTCGTGATTTGTGTTGGCTTTATCGAT GGTGTGGGCGTCGATTGGGTAGTCGAGCGCCATGTATGTCGTCGCGAAGGTTCTATACACGAGTTCCGCAGAGAG |
Length | 1800 |
Sequence id | CopciAB_500888.T0 |
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Sequence |
>CopciAB_500888.T0 GGCTAATCCTCGAACTCCTCGATGCAACGGCCCTGCACTTCTAGGGGTATGAAAGCAAACTTGGAAATGAGAAAG TCCTTCCCTGGGCAGCTCCTCGAGAATCAATACAGCGCCGTTGTCTTCGGCGTCACTCGATCAGAATAGCGCCCA CTGTCAACCTACACAACCTGGACAACTCCAGTTTGTGTGTTAACTTCCATGCATCTAGCTAGGGTGCTTCCAACA ATGGCCATCCAGACACTTCCTCGATACCTGCGTCTATCTTTTTTGCCCTCTCGTTTCGCAGTGCTTCCAAGCACC CGTCATGTCCCATCCAGGTCCTCGTTGAATCGCCGCAACCTGACAGCAAGCTCAAGGCTTCAAGAACATGGAGAT ACCACGCAAAGACGTGGCAATGGCCTCTCAATGCCCAGACATAGCTCCAAGGACTCTGGACGACCACTCAGCCCA GGCCCCAGCTCCGAAGTCGACAGCCTCAGATACTTCCCTGCCCAGCTCAACACCGTTCTTCGTGGCAATCCCAAA ATCACAGTAATCAGGAAACTAGGCTCTGGCCCTCGTTCCTCAACATGGCTCGTGAAACACATCGAATCCAGTACC TACTCAGCGCTCAAAATCTACACTGCCGCCGCTTCTCGGGAAGAACGAGGACTGGCAGAAGAGAAAAGGTTAGTT GAGTTGAGGGACGTGATGGCTTACAGCAGCGGCTATTCCAAGCATCCCTGCCATTTCAGTACGTGGTGGGAGGAG AGCACCCGCGGACGTCATCTGTGTTACCTTGTGGAACCCTATTGCGGGTTATCGCTCGAGGACGTCAGAAATGGA GACCCGATGGGCCGGCTGCCTATTCGTACCGTCCAATTCGTCTTCAATGAACTAGTGGAGAAGCTGAGCGAAGTT CATGGGTTCGCGGATGGGATGCACGGGTGTGAGAGTCACGTCCCCATTAAACGAGCAATCCAACTAAAGCCTTTT ATTCTAGCCCTCTCGGCAGAGAACGCTGTGTTCTGGACCTGGGCCGACGTTAAATACCTCAAGCCACACCTCTCT CTGCCAGAAGGGAGTACTATCGACGGAGTTGCGAAGATAAAAGCCCAGCCATTAATGCAAGTCGAGAATCCCGAC CCTAAATCGACGGACGACCTTCCAACCGTGATGAAAACCTGGCAATTCGTTTTCCGCGGTTTCGAATATGGTATG TAACTCTCATTCTCTCCGATCTAGCCCGCCATTGACCCTCCTCTCCCTCAGCACTCTTCGGTTTCTGAACACCAG CTCAGGTTGGTTCCGGCCTCAAACCACACCCGCAACATGACTACGCGTCTGCACCAGAGACACTCTTATCCAATG CAACCTGCTCGTCCCAAACCGATATTTGGATGCTAGGAGTGATGGTGCTCCTTCAATTCATTTCTAGGCAGTGTC GCCCAGCTCACCGACGCTTACCTTGCAGATATTCAAGCTCTTGACAGGTCGTGATCTCTTCACCTCCACTGGTAC ACCTCTGGAACGCTTCACCGAAATACGCCATATCCTCGAGGAGGACGATATCCCGAGTGGTTAATGCGACGACCC TTCCCTCAAAGGACAAGTTGTCCCAAAGACATCCTCGGGAGGCACCAGACCCAGACTTGAACAACTCCTTGCGGA CGTCCTACCCCTACATGAAGTCCCAGGAACAGTGAAGCTCTTGAAGAAGTGCCTACGTATTAACCCGGACAACCG ACCTTCTGCGTTAGAGATGGAGGACGACGAGTGGGTGGGTTCTCTCCCACTGCTCGTGTGGGTATCCCCATGATT AACGATGAGTCGTGATTTGTGTTGGCTTTATCGATGGTGTGGGCGTCGATTGGGTAGTCGAGCGCCATGTATGTC GTCGCGAAGGTTCTATACACGAGTTCCGCAGAGAG |
Length | 1910 |