CopciAB_501860
Coprinopsis cinerea A43mutB43mut pab1-1 #326

General data

Systematic name CopciAB_501860 Strain Coprinopsis cinerea Okayama 7
Standard name - Synonyms 501860
Uniprot id Functional description
Location scaffold_15:100157..101519 Strand -
Gene length (nt) 1363 Transcript length (nt) 1131
CDS length (nt) 1131 Protein length (aa) 376

Reciprocal best hits in model fungi

Strain name Gene / Protein name

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
0

Expression

Name Summary Attribution Assay type
Carbon metabolism Transcriptional changes along alternative morphogenetic paths of C. cinerea Xie et al. 2020 RNA-Seq
Sample Mean cpm SD cpm Se of mean
sclerotia 0 0 0
oidia 0.0437 0.038 0.0219
vegetative_mycelium 0 0 0
primordia 0.0491 0.085 0.0491
hyphal_knot 0 0 0
young_fruiting_body 0.0455 0.0789 0.0455
Complex carbon sources 1 (long incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control - glucose 0.0209 0.0362 0.0209
Wheat bran 0.0705 0.0163 0.0094
Horse manure 0 0 0
Oak leaves 0.0763 0.019 0.011
Hay 0.0817 0.0759 0.0438
Corn stalk 0.0893 0.0242 0.014
Pectine 0.0394 0.0364 0.021
Microcrystalline cellulose 0.1146 0.0554 0.032
Xylose 0.1265 0.1374 0.0793
Cellobiose 0.0961 0.1665 0.0961
Lignin 0.2299 0.0456 0.0264
Apple peels 0.0177 0.0307 0.0177
Coprinopsis challenged with bacteria Transcriptional response to Bacillus subtilis and Escherichia coli. Kombrink et al. 2018 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control 0 0 0
Bsubtilis 0 0 0
Ecoli 0 0 0
Early development 1 Time series expression profiling of basidiospore and oidium germination Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
BS 0h 0 0 0
BS 4h 0.0209 0.0362 0.0209
BS 8h 0 0 0
BS 12h 0 0 0
Oidia 0 h 0 0 0
Oidia 18 h 0.1132 0.131 0.0756
Sclerotia 0 0 0
Early development 2 Time series expression profiling of mycelial growth, light induction and fruiting body initiation. Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
DM 12h 0 0 0
DM 36h 0 0 0
DM 60h 0 0 0
DM 84h 0.0142 0.0246 0.0142
DM 108h 0 0 0
DM 132h 0 0 0
DM 156hAE 0.0254 0.0439 0.0254
ELI1hAE 0 0 0
ELI2hAE 0.1204 0.2085 0.1204
LI2hAE 0 0 0
LI6hAE 0 0 0
LI12hAE 0.0142 0.0246 0.0142
LI18hAE 0 0 0
LI 24hAE 0 0 0
DM 156hAM 0 0 0
ELI1hAM 0.0082 0.0143 0.0082
ELI2hAM 0 0 0
LI2hAM 0.0359 0.0623 0.0359
LI6hAM 0.0919 0.155 0.0895
LI12hAM 0 0 0
LI18hAM 0.0157 0.0272 0.0157
LI 24hAM 0 0 0
LI 24hHK 0.0049 0.0086 0.0049
L/D 6h 0 0 0
L/D 12h 0 0 0
L/D 18h 0 0 0
L/D 24h 0 0 0
Fruiting body development RNA-Seq analysis of fruiting body development Krizsan et al. 2019 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Vegetative mycelium 0.0477 0.0599 0.0346
Hyphal knots 0.1972 0.2481 0.1432
Primordium 1 0.0168 0.0292 0.0168
Primordium 2 0.0348 0.0602 0.0348
Young Fruiting body cap 0.017 0.0295 0.017
Younf fruiting body gill 0.0471 0.0313 0.0181
Young fruiting body stipe 0.0216 0.0195 0.0113
Mature fruiting body cap_gill 0.2181 0.2305 0.1331
Mature fruiting body stipe 0.2079 0.3069 0.1772
Nitrogen sources (12h incubation) Expression profiling on diverse nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Complete medium - control 0.0408 0.0355 0.0205
NH4NO3 0.0297 0.0514 0.0297
Proline 0.0172 0.0298 0.0172
Tryptophan 0.0683 0.1183 0.0683
Isoleucin 0 0 0
Arginine 0 0 0
Metionine 0.0175 0.0303 0.0175
NaNO3 0.0764 0.0678 0.0391
Plant biomass (12h incubation) Expression profiling on diverse plant biomasses as carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 0.0408 0.0355 0.0205
Citrus peel 0.0558 0.0966 0.0558
Poplar leaves 0.0541 0.0938 0.0541
Typha leaves 0.0918 0.0809 0.0467
Overwintered Salix leaves 0.0168 0.0291 0.0168
Reed flowering 0.162 0.1537 0.0887
Tigernut 0.1582 0.1588 0.0917
Energy cane 0.1357 0.1251 0.0722
Guar gum 0.0983 0.099 0.0572
Apple peels 0.0919 0.0777 0.0448
Cellobiose 0 0 0
Corn stalk 0.143 0.1466 0.0846
Horse manure 0 0 0
Lignin 0.0847 0.1467 0.0847
Microcrystalline cellulose 0.0167 0.0289 0.0167
Oak leaves 0.127 0.1439 0.0831
Pectin esterified 0.1201 0.1068 0.0617
Poplar sawdust 0 0 0
Wheat bran 0.1197 0.1713 0.0989
Chlamydomonas reinhardtii 0.0361 0.0315 0.0182
Vertatryl alcohol 0.0602 0.0098 0.0057
Furfural 0.3844 0.17 0.0981
Autoclaved mycelium 0.0174 0.0301 0.0174
Simple and complex carbon and nitrogen sources Expression profiling on diverse complex carbon and nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 0.04 0.0694 0.04
Ribose 0.0305 0.0529 0.0305
Mannose 0.0186 0.0263 0.0186
Fructose 0 0 0
Arabinose 0.0609 0.1054 0.0609
Xylose 0.0432 0.0749 0.0432
Galacturonic acid 0.0383 0.0663 0.0383
Rhamnogalacturonan 0 0 0
Pectin esterified 0 0 0
Polygalacturonic acid 0.1156 0.1405 0.0811
Sodium acetate 0 0 0
No nitrogen 0 0 0
BSA 0.041 0.0358 0.0207
Glutamine 0.1023 0.1772 0.1023
No phosphate 0.0311 0.0538 0.0311
No carbon 0.047 0.0665 0.047
No sulphur 0.0904 0.0873 0.0504
Simple and complex carbon sources (12h incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 0.0408 0.0355 0.0205
Amylose 0.0165 0.0286 0.0165
Fucose 0.015 0.0261 0.015
Galactose 0.0284 0.0492 0.0284
Lactose 0.0331 0.0574 0.0331
Maltose 0.0156 0.027 0.0156
Mannitol 0.0156 0.027 0.0156
Rhamnose 0.0313 0.0277 0.016
Sorbitol 0 0 0
Trehalose 0.0422 0.0731 0.0422
Glycerol 0.1325 0.2296 0.1325
Glucuronic acid 0.0136 0.0235 0.0136
Arabinan 0.0615 0.0718 0.0414
Galactan 0.2238 0.1939 0.112
Galactomannan 0 0 0
Glucan 0 0 0
Xylan 0.0329 0.0287 0.0166
Xyloglucan 0.0487 0.0844 0.0487
Arabinogalactan 0.0299 0.0518 0.0299
Pectin 0.1731 0.0909 0.0525
Rhamnogalacturonan 0.1919 0.2007 0.1159
Polygalacturonic acid 0.0157 0.0272 0.0157
Mannan 0.0307 0.0268 0.0155
Amylopectin 0.0254 0.044 0.0254
Inulin 0 0 0
BSA 0.1937 0.0464 0.0268
Starvation induced by water agar transfer Expression profiling on starvation induced by transfer to water agar Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Control 0 0 0
2h WAT 0 0 0
4h WAT 0 0 0
8h WAT 0 0 0
16h WAT 0.0796 0.1379 0.0796
24h WAT 0.0499 0.0864 0.0499
WAT hyphal knot -30h 0 0 0
WAT hyphal knot -22h 0 0 0
WAT hyphal knot -15h 0 0 0
WAT hyphal knot -7.5h 0.1833 0.2133 0.1232
WAT hyphal knot 0.0105 0.0181 0.0105
WAT hyphal knot +7.5h 0 0 0
Straw time series Time series expression profiling on straw as a carbon source Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 0.0801 0.1388 0.0801
Straw 3h 0 0 0
Straw 6h 0.0159 0.0276 0.0159
Straw 12h 0.0412 0.0714 0.0412
Straw 24h 0.2886 0.3061 0.1767
Stress conditions 1 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 0.0332 0.0575 0.0332
Frost (-20C, 30min) 0.0057 0.0099 0.0057
Heat shock (47C, 2h) 0.0422 0.0731 0.0422
High CO2 0 0 0
Drought (4% agar, 12h) 0.0041 0.0071 0.0041
Oxidative (1mM H2O2, 3h) 0 0 0
Acidic (pH4, 3h) 0 0 0
Alkaline (pH9, 3h) 0 0 0
Osmotic (sorbitol 2h) 0.0365 0.0632 0.0365
CongoRed (3h) 0.0339 0.0586 0.0339
Cobalt chloride control 0.03 0.052 0.03
Cobalt chloride 2mM 0 0 0
Stress conditions 2 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 0.0164 0.0191 0.011
Cold stimulation 0.0037 0.0064 0.0037
Scratched surface 0 0 0
Ca2+, 200mM, 24h 0.0527 0.0913 0.0527
Cu2+, 2mM, 6h 0.1734 0.1898 0.1096
Voriconazole 0 0 0
Trichoderma interaction, early 0.0359 0.0622 0.0359
Trichoderma interaction 60h 0 0 0
Cobalt chloride 2mM repeat 0.0843 0.0735 0.0424
Hypoxia 0.0083 0.0144 0.0083
Hypoxia control 0 0 0
Protoplastation control 0.163 0.2305 0.163
Protoplastation 3.5h 0 0 0
Protoplastation 1.5h 0 0 0

General data

Systematic name -
Protein id CopciAB_501860.T0
Description

Annotation summary

0 100 200 300 376

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
Pfam PF17667 Fungal protein kinase IPR040976 145 292

SignalP

Prediction Start End Score
No records

Transmembrane domains

Domain n Start End Length
No records

InterPro

Accession Description
IPR040976 Fungal-type protein kinase

GO

Go id Term Ontology
No records

KEGG

KEGG Orthology
No records

EggNOG

COG category Description
No records

CAZy

Class Family Subfamily
No records

Transcription factor

Group
No records

Conservation of CopciAB_501860 across fungi.

Arrow shows the origin of gene family containing CopciAB_501860.

Protein

Sequence id CopciAB_501860.T0
Sequence >CopciAB_501860.T0
MTSYDDTLPNFETPQYTPFRRVTKEITTYTPPEPRIIAVPEAKTTAIGLDIGKDMNKQTSVCDIEVFMDHYLPKV
DDEVFGAVLDDLKKRGTLVPRDICATDAATARVATLDTTNLGRAICKALEKAGIKPNAHIIRMFRDNQLKSPING
SIRNTDVAVAFEFKSTRVLEMEDPIHVALQASDAINDDARRKFVLGITIEDDHVSLWYFSRTNSAKSMSFSIVER
ADLYVKIMISLFCATDEQLGFDPLVQLIDDHLLSPSDEMAEAKYYRTKNSVSASRSVGRAGRFSRARQVELVDTA
NESGEKDMILNDVLSMVDAPAEVDIPKLVLADIEGLRKDSEQPLYDAPLMGALSEADSAFLTSLLQGAESGFCIG
L
Length 376

Coding

Sequence id CopciAB_501860.T0
Sequence >CopciAB_501860.T0
ATGACGAGCTACGATGATACCCTCCCCAATTTCGAGACACCGCAGTATACGCCTTTCAGACGCGTTACAAAGGAG
ATTACAACTTACACGCCGCCAGAGCCAAGAATTATCGCAGTCCCAGAAGCAAAGACGACCGCGATTGGCTTGGAC
ATCGGGAAGGACATGAACAAGCAGACGTCCGTTTGCGATATCGAGGTATTCATGGATCACTATCTCCCGAAGGTC
GACGATGAGGTTTTTGGCGCTGTTCTCGATGACCTGAAGAAGAGGGGTACTCTTGTACCTCGCGACATCTGTGCC
ACAGACGCTGCCACCGCACGGGTCGCCACTTTGGACACCACTAATCTCGGCCGCGCTATTTGCAAGGCGCTCGAG
AAGGCCGGTATTAAGCCAAACGCGCATATCATTCGCATGTTCCGCGACAACCAGCTCAAGTCGCCAATCAATGGC
AGTATTCGCAACACCGATGTGGCTGTGGCATTTGAATTCAAGTCGACGCGAGTACTCGAGATGGAGGACCCCATT
CATGTAGCATTGCAAGCCAGTGACGCAATCAACGACGATGCTCGACGCAAATTCGTTCTTGGAATAACCATCGAA
GACGATCATGTATCCCTCTGGTATTTCTCCCGTACCAATTCCGCGAAATCAATGTCATTCAGTATCGTTGAGCGA
GCAGATCTTTATGTTAAGATCATGATATCACTTTTTTGCGCCACCGATGAGCAGCTTGGATTCGACCCCCTCGTG
CAGTTGATCGACGATCATCTCCTGAGTCCAAGTGACGAGATGGCTGAAGCCAAGTACTACCGAACCAAGAACTCA
GTTTCTGCAAGCCGCTCTGTTGGTCGTGCAGGTCGCTTCAGTCGTGCTCGACAGGTTGAGCTCGTGGACACCGCA
AACGAGTCGGGTGAAAAGGACATGATCTTGAACGATGTTTTGTCAATGGTTGACGCGCCTGCTGAGGTCGACATT
CCAAAGCTGGTACTCGCCGATATTGAGGGACTGAGAAAGGACTCTGAGCAGCCCCTGTACGACGCCCCACTCATG
GGGGCCCTGTCCGAGGCGGACAGTGCTTTCCTCACAAGCCTCCTTCAGGGTGCCGAAAGTGGCTTCTGCATTGGA
CTCTGA
Length 1131

Transcript

Sequence id CopciAB_501860.T0
Sequence >CopciAB_501860.T0
ATGACGAGCTACGATGATACCCTCCCCAATTTCGAGACACCGCAGTATACGCCTTTCAGACGCGTTACAAAGGAG
ATTACAACTTACACGCCGCCAGAGCCAAGAATTATCGCAGTCCCAGAAGCAAAGACGACCGCGATTGGCTTGGAC
ATCGGGAAGGACATGAACAAGCAGACGTCCGTTTGCGATATCGAGGTATTCATGGATCACTATCTCCCGAAGGTC
GACGATGAGGTTTTTGGCGCTGTTCTCGATGACCTGAAGAAGAGGGGTACTCTTGTACCTCGCGACATCTGTGCC
ACAGACGCTGCCACCGCACGGGTCGCCACTTTGGACACCACTAATCTCGGCCGCGCTATTTGCAAGGCGCTCGAG
AAGGCCGGTATTAAGCCAAACGCGCATATCATTCGCATGTTCCGCGACAACCAGCTCAAGTCGCCAATCAATGGC
AGTATTCGCAACACCGATGTGGCTGTGGCATTTGAATTCAAGTCGACGCGAGTACTCGAGATGGAGGACCCCATT
CATGTAGCATTGCAAGCCAGTGACGCAATCAACGACGATGCTCGACGCAAATTCGTTCTTGGAATAACCATCGAA
GACGATCATGTATCCCTCTGGTATTTCTCCCGTACCAATTCCGCGAAATCAATGTCATTCAGTATCGTTGAGCGA
GCAGATCTTTATGTTAAGATCATGATATCACTTTTTTGCGCCACCGATGAGCAGCTTGGATTCGACCCCCTCGTG
CAGTTGATCGACGATCATCTCCTGAGTCCAAGTGACGAGATGGCTGAAGCCAAGTACTACCGAACCAAGAACTCA
GTTTCTGCAAGCCGCTCTGTTGGTCGTGCAGGTCGCTTCAGTCGTGCTCGACAGGTTGAGCTCGTGGACACCGCA
AACGAGTCGGGTGAAAAGGACATGATCTTGAACGATGTTTTGTCAATGGTTGACGCGCCTGCTGAGGTCGACATT
CCAAAGCTGGTACTCGCCGATATTGAGGGACTGAGAAAGGACTCTGAGCAGCCCCTGTACGACGCCCCACTCATG
GGGGCCCTGTCCGAGGCGGACAGTGCTTTCCTCACAAGCCTCCTTCAGGGTGCCGAAAGTGGCTTCTGCATTGGA
CTCTGA
Length 1131

Gene

Sequence id CopciAB_501860.T0
Sequence >CopciAB_501860.T0
ATGACGAGCTACGATGATACCCTCCCCAATTTCGAGTAAGTCGCTTCAGTGGCTCTCCAGGTGCAGTGTCGGACT
AACTTTTTGAAATTCGGGCAGGACACCGCAGTATACGCCTTTCAGACGCGTTACAAAGGAGATTACAACTTACAC
GCCGCCAGAGCCAAGAATTATCGCAGTCCCAGAAGCAAAGACGACCGCGATTGGCTTGGACATCGGGAAGGACAT
GAACAAGCAGACGTCCGTTTGCGATATCGAGGTATTCATGGATCACTATCTCCCGAAGGTCGACGATGAGGTTTT
TGGCGCTGTTCTCGATGACCTGAAGAAGAGGGGTACTCTTGTACCTCGCGACATCTGTGCCACAGACGCTGCCAC
CGCACGGGTCGCCACTTTGGACACCACTAATCTCGGCCGCGCTATTTGCAAGGCGCTCGAGAAGGCCGGTATTAA
GCCAAACGCGCATATCATTCGCATGTTCCGCGACAACCAGCTCAAGTCGCCAATCAATGGCAGTATTCGCAACAC
CGATGTGGCTGTGGCATTTGAATTCAAGTCGACGCGAGTACTCGAGATGGAGGTACGTTCTTTCTTCGTTACTGT
GCAGTTTGAGTACGCCGGATCCTGACATGGATACCTTCCTAGGACCCCATTCATGTAGCATTGCAAGCCAGTGAC
GCAATCAACGACGATGCTCGACGCAAATTCGTTCTTGGAGTACGTTTTCAATGCCCCCTAAATTCCTTGATATAC
TAACATCAAATCGCAGATAACCATCGAAGACGATCATGTATCCCTCTGGTATTTCTCCCGTACCAATTCCGCGAA
ATCAATGTCATTCAGTATCGTTGAGGTTAGTCTCCTTTTCAGCTGCGCACCGACGTGAATGGTAACTCTACTTTC
TTAGCGAGCAGATCTTTATGTTAAGATCATGATATCACTTTTTTGCGCCACCGATGAGCAGCTTGGATTCGACCC
CCTCGTGCAGTTGATCGACGATCATCTCCTGAGTCCAAGTGACGAGATGGCTGAAGCCAAGTACTACCGAACCAA
GAACTCAGTTTCTGCAAGCCGCTCTGTTGGTCGTGCAGGTCGCTTCAGTCGTGCTCGACAGGTTGAGCTCGTGGA
CACCGCAAACGAGTCGGGTGAAAAGGACATGATCTTGAACGATGTTTTGTCAATGGTTGACGCGCCTGCTGAGGT
CGACATTCCAAAGCTGGTACTCGCCGATATTGAGGGACTGAGAAAGGACTCTGAGCAGCCCCTGTACGACGCCCC
ACTCATGGGGGCCCTGTCCGAGGCGGACAGTGCTTTCCTCACAAGCCTCCTTCAGGGTGCCGAAAGTGGCTTCTG
CATTGGACTCTGA
Length 1363