CopciAB_502291
Coprinopsis cinerea A43mutB43mut pab1-1 #326

General data

Systematic name CopciAB_502291 Strain Coprinopsis cinerea Okayama 7
Standard name - Synonyms 502291
Uniprot id Functional description
Location scaffold_6:2664225..2666018 Strand +
Gene length (nt) 1794 Transcript length (nt) 1581
CDS length (nt) 975 Protein length (aa) 324

Reciprocal best hits in model fungi

Strain name Gene / Protein name

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
0

Expression

Name Summary Attribution Assay type
Carbon metabolism Transcriptional changes along alternative morphogenetic paths of C. cinerea Xie et al. 2020 RNA-Seq
Sample Mean cpm SD cpm Se of mean
sclerotia 6.2276 0.8952 0.5168
oidia 1.1291 0.2488 0.1436
vegetative_mycelium 1.6402 0.6912 0.3991
primordia 1.3636 0.3537 0.2042
hyphal_knot 9.324 0.7021 0.4053
young_fruiting_body 15.3947 1.3786 0.7959
Complex carbon sources 1 (long incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control - glucose 5.0546 3.1036 1.7919
Wheat bran 4.634 1.6992 0.981
Horse manure 4.3573 1.8642 1.0763
Oak leaves 6.3899 1.9674 1.1359
Hay 2.6254 0.7328 0.4231
Corn stalk 4.5111 0.5779 0.3337
Pectine 4.2338 1.0358 0.598
Microcrystalline cellulose 3.1252 1.3316 0.7688
Xylose 4.9343 2.3773 1.3725
Cellobiose 4.3072 1.6303 0.9413
Lignin 5.6792 4.1275 2.383
Apple peels 2.765 0.178 0.1028
Coprinopsis challenged with bacteria Transcriptional response to Bacillus subtilis and Escherichia coli. Kombrink et al. 2018 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control 1.116 0.1445 0.0834
Bsubtilis 1.8825 0.277 0.1599
Ecoli 2.6245 0.112 0.0646
Early development 1 Time series expression profiling of basidiospore and oidium germination Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
BS 0h 0.2112 0.0859 0.0496
BS 4h 0.5396 0.584 0.3372
BS 8h 0.8141 0.3 0.1732
BS 12h 0.4097 0.2714 0.1567
Oidia 0 h 10.2901 0.8263 0.4771
Oidia 18 h 1.0321 0.3243 0.1872
Sclerotia 5.6784 4.1576 2.4004
Early development 2 Time series expression profiling of mycelial growth, light induction and fruiting body initiation. Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
DM 12h 0.8055 0.3704 0.2139
DM 36h 0.3687 0.2265 0.1307
DM 60h 0.4132 0.086 0.0497
DM 84h 0.783 0.2238 0.1292
DM 108h 0.7936 0.2078 0.12
DM 132h 0.5015 0.1156 0.0668
DM 156hAE 1.8034 0.3295 0.1902
ELI1hAE 1.2574 0.5231 0.302
ELI2hAE 1.4919 0.708 0.4088
LI2hAE 1.0655 0.3385 0.1955
LI6hAE 1.3851 0.2677 0.1545
LI12hAE 1.0513 0.5945 0.3433
LI18hAE 2.7955 1.7005 0.9818
LI 24hAE 1.6824 1.0639 0.6142
DM 156hAM 0.9357 0.7418 0.4283
ELI1hAM 0.6479 0.176 0.1016
ELI2hAM 0.8236 0.0753 0.0435
LI2hAM 0.5177 0.0621 0.0358
LI6hAM 1.8374 0.3766 0.2174
LI12hAM 3.2757 0.3589 0.2072
LI18hAM 3.304 2.1171 1.2223
LI 24hAM 1.2911 0.539 0.3112
LI 24hHK 1.4578 0.4932 0.2847
L/D 6h 5.3945 4.0816 2.3565
L/D 12h 6.1988 2.3114 1.3345
L/D 18h 4.4256 1.8374 1.0608
L/D 24h 1.8756 0.4982 0.2876
Fruiting body development RNA-Seq analysis of fruiting body development Krizsan et al. 2019 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Vegetative mycelium 3.0931 0.3812 0.2201
Hyphal knots 5.6125 1.8854 1.0886
Primordium 1 3.231 1.5674 0.9049
Primordium 2 3.4598 0.5376 0.3104
Young Fruiting body cap 4.7071 1.9908 1.1494
Younf fruiting body gill 1.9879 2.6961 1.5566
Young fruiting body stipe 2.0992 0.7576 0.4374
Mature fruiting body cap_gill 25.2534 5.998 3.4629
Mature fruiting body stipe 8.4343 2.6688 1.5408
Nitrogen sources (12h incubation) Expression profiling on diverse nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Complete medium - control 1.6342 0.437 0.2523
NH4NO3 1.5827 0.181 0.1045
Proline 1.2031 0.3488 0.2014
Tryptophan 1.6483 0.5318 0.307
Isoleucin 1.1473 0.3776 0.218
Arginine 1.25 0.1692 0.0977
Metionine 2.0518 0.4304 0.2485
NaNO3 0.7924 0.0717 0.0414
Plant biomass (12h incubation) Expression profiling on diverse plant biomasses as carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 1.6342 0.437 0.2523
Citrus peel 0.8961 0.345 0.1992
Poplar leaves 1.5309 0.1298 0.0749
Typha leaves 1.0521 0.3302 0.1907
Overwintered Salix leaves 1.2632 0.2188 0.1263
Reed flowering 0.6032 0.132 0.0762
Tigernut 0.4642 0.1297 0.0749
Energy cane 1.5408 0.5087 0.2937
Guar gum 1.47 0.9556 0.5517
Apple peels 0.5394 0.1698 0.0981
Cellobiose 0.9607 0.5322 0.3073
Corn stalk 1.7892 0.4917 0.2839
Horse manure 1.8377 0.5948 0.3434
Lignin 2.4774 0.9318 0.538
Microcrystalline cellulose 0.999 0.6657 0.3843
Oak leaves 2.2667 0.4676 0.27
Pectin esterified 0.8143 0.751 0.4336
Poplar sawdust 2.4895 0.2525 0.1458
Wheat bran 1.8021 0.9228 0.5328
Chlamydomonas reinhardtii 1.6924 0.0839 0.0485
Vertatryl alcohol 3.7943 0.5941 0.343
Furfural 1.5214 0.8816 0.509
Autoclaved mycelium 1.2637 0.2778 0.1604
Simple and complex carbon and nitrogen sources Expression profiling on diverse complex carbon and nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 2.8029 0.4658 0.2689
Ribose 2.5815 1.0347 0.5974
Mannose 2.2844 0.4927 0.3484
Fructose 2.6357 0.7207 0.4161
Arabinose 3.999 1.52 0.8776
Xylose 3.1438 0.2733 0.1578
Galacturonic acid 3.4317 0.8057 0.4652
Rhamnogalacturonan 3.0543 0.6453 0.3726
Pectin esterified 3.0381 0.638 0.3684
Polygalacturonic acid 3.1886 0.2443 0.141
Sodium acetate 2.2572 0.5416 0.3127
No nitrogen 2.7667 0.6896 0.3982
BSA 2.8957 0.6368 0.3677
Glutamine 3.6791 0.7492 0.4325
No phosphate 2.3819 0.526 0.3037
No carbon 1.8098 0.5 0.3536
No sulphur 3.0119 1.0322 0.596
Simple and complex carbon sources (12h incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 1.6342 0.437 0.2523
Amylose 2.3652 0.4841 0.2795
Fucose 1.9111 0.1354 0.0782
Galactose 2.3816 0.0846 0.0488
Lactose 1.289 0.5893 0.3402
Maltose 2.732 0.3493 0.2017
Mannitol 1.5482 0.4043 0.2334
Rhamnose 1.7126 0.4561 0.2633
Sorbitol 1.4266 0.0752 0.0434
Trehalose 1.9181 0.9379 0.5415
Glycerol 1.4122 0.8135 0.4697
Glucuronic acid 2.338 0.6928 0.4
Arabinan 1.4429 0.2817 0.1626
Galactan 1.4343 0.3717 0.2146
Galactomannan 1.6811 1.433 0.8274
Glucan 2.1336 0.4735 0.2734
Xylan 1.4823 0.4286 0.2475
Xyloglucan 2.2384 0.3471 0.2004
Arabinogalactan 2.3923 1.0757 0.6211
Pectin 3.0575 0.6483 0.3743
Rhamnogalacturonan 1.3308 0.4942 0.2854
Polygalacturonic acid 2.721 0.6176 0.3566
Mannan 1.8868 0.5494 0.3172
Amylopectin 1.6669 0.8506 0.4911
Inulin 3.2146 0.4253 0.2455
BSA 0.4087 0.4158 0.2401
Starvation induced by water agar transfer Expression profiling on starvation induced by transfer to water agar Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Control 0.4132 0.086 0.0497
2h WAT 1.4894 1.2032 0.6946
4h WAT 1.8107 1.4018 0.8093
8h WAT 0.8389 0.5422 0.3131
16h WAT 1.6486 0.7149 0.4128
24h WAT 0.8528 0.5828 0.3365
WAT hyphal knot -30h 0.5443 0.2447 0.1413
WAT hyphal knot -22h 0.4068 0.2434 0.1405
WAT hyphal knot -15h 1.0857 1.012 0.5843
WAT hyphal knot -7.5h 1.448 0.8189 0.4728
WAT hyphal knot 1.6985 0.152 0.0878
WAT hyphal knot +7.5h 0.7783 0.8013 0.4626
Straw time series Time series expression profiling on straw as a carbon source Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 1.6711 0.3261 0.1883
Straw 3h 3.9167 2.8041 1.6189
Straw 6h 5.5995 5.3178 3.0702
Straw 12h 4.1739 1.8311 1.0572
Straw 24h 2.2615 2.7414 1.5828
Stress conditions 1 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 0.1328 0.23 0.1328
Frost (-20C, 30min) 1.0354 0.25 0.1443
Heat shock (47C, 2h) 4.6466 0.2018 0.1165
High CO2 1.6354 0.8087 0.4669
Drought (4% agar, 12h) 0.5621 0.1518 0.0876
Oxidative (1mM H2O2, 3h) 1.0347 0.4363 0.2519
Acidic (pH4, 3h) 0.0902 0.1563 0.0902
Alkaline (pH9, 3h) 0.3241 0.1971 0.1138
Osmotic (sorbitol 2h) 0.6597 0.6103 0.3523
CongoRed (3h) 0.7498 0.3889 0.2245
Cobalt chloride control 2.9953 2.067 1.1934
Cobalt chloride 2mM 5.0199 1.1926 0.6886
Stress conditions 2 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 1.1527 1.0794 0.6232
Cold stimulation 1.5703 0.8589 0.4959
Scratched surface 0.3399 0.21 0.1213
Ca2+, 200mM, 24h 5.024 1.9188 1.1078
Cu2+, 2mM, 6h 0.8888 0.1749 0.101
Voriconazole 1.8934 1.7062 0.9851
Trichoderma interaction, early 0.4875 0.4305 0.2486
Trichoderma interaction 60h 3.733 3.7088 2.1413
Cobalt chloride 2mM repeat 1.8672 0.6941 0.4008
Hypoxia 1.1078 1.3091 0.7558
Hypoxia control 0.3342 0.163 0.0941
Protoplastation control 1.7847 0.0886 0.0626
Protoplastation 3.5h 5.9246 3.1696 2.2413
Protoplastation 1.5h 5.4344 3.0823 2.1795

General data

Systematic name -
Protein id CopciAB_502291.T0
Description

Annotation summary

0 100 200 300 324

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
Pfam PF17667 Fungal protein kinase IPR040976 34 166

SignalP

Prediction Start End Score
No records

Transmembrane domains

Domain n Start End Length
No records

InterPro

Accession Description
IPR040976 Fungal-type protein kinase
IPR011009 Protein kinase-like domain superfamily

GO

Go id Term Ontology
No records

KEGG

KEGG Orthology
No records

EggNOG

COG category Description
No records

CAZy

Class Family Subfamily
No records

Transcription factor

Group
No records

Conservation of CopciAB_502291 across fungi.

Arrow shows the origin of gene family containing CopciAB_502291.

Protein

Sequence id CopciAB_502291.T0
Sequence >CopciAB_502291.T0
MQSWCGGSQSRCPSEEPSDLSLVYANAMNEHGFSSGTKRRSSRTIFKEIGPPIYKFNTVLDVLYALIDAIRVHQR
MVQQAGVLHGNVSINSIIFGGVVPGADSEEGRRVSLVDFDIVPTSFDRSDALSDELRTGTRMFQSLNALKTWRPH
DYLDDLESFLYVLAYLVFAFPSPGASVTVKRKLPMDLQDWNARDLRRAFNSKSEFIDYGPQGSDLPVPPMWGPHI
FTLIDDLCLHFQPIHTTSSRMRSRSLSTTHRENIEISFKEKYLDNRVVDGRYDEVVGYFESAIKSILAEQDSAND
SEQSTLSDSLSHSRPSKGRREEGI
Length 324

Coding

Sequence id CopciAB_502291.T0
Sequence >CopciAB_502291.T0
ATGCAGTCTTGGTGCGGGGGATCGCAGTCACGGTGTCCGTCCGAAGAGCCCTCAGATCTGTCCCTCGTATATGCC
AATGCAATGAACGAGCATGGCTTCTCAAGCGGGACCAAACGACGTAGTAGCCGCACCATCTTCAAAGAAATTGGT
CCACCAATCTACAAGTTCAACACCGTCCTCGACGTACTCTACGCATTGATCGATGCCATTCGAGTCCATCAACGT
ATGGTCCAACAAGCAGGAGTCCTGCACGGCAATGTCAGCATTAACAGCATCATCTTTGGGGGAGTAGTACCCGGT
GCCGACTCTGAGGAAGGACGGCGAGTATCTCTCGTCGACTTCGATATCGTGCCTACCTCCTTCGACCGCTCTGAT
GCACTTTCGGATGAGCTTAGGACTGGCACCCGCATGTTCCAATCCCTCAACGCCCTCAAAACCTGGCGTCCACAC
GACTACTTGGATGACCTCGAGTCGTTTCTCTACGTCCTAGCCTACCTCGTCTTCGCCTTTCCGAGTCCGGGTGCC
AGCGTCACGGTCAAACGCAAGCTACCGATGGACCTTCAAGATTGGAACGCACGCGACTTACGCAGAGCCTTCAAT
AGCAAATCGGAATTCATCGACTACGGACCTCAGGGTTCAGACCTCCCGGTTCCCCCGATGTGGGGACCTCACATA
TTCACCCTCATCGACGACCTTTGTCTCCATTTCCAACCCATCCACACCACATCGTCTCGCATGCGCAGTCGGAGT
CTGTCCACCACCCACCGCGAAAACATCGAAATCTCGTTCAAGGAGAAGTATCTTGATAATCGTGTTGTAGATGGG
CGGTATGATGAGGTTGTGGGGTACTTTGAGTCGGCCATCAAGAGTATCCTTGCGGAACAGGATAGCGCTAATGAC
TCGGAGCAGTCCACTTTGTCCGACTCCCTCTCCCACTCCAGGCCTTCGAAAGGGCGCCGGGAAGAGGGGATCTGA
Length 975

Transcript

Sequence id CopciAB_502291.T0
Sequence >CopciAB_502291.T0
ATCTTGAACCTTGACCACCACCCAGCAGTGGCACTGAGTTTTTACTTCCATCTTACCTCCACCCTCAGATAAGCA
ACCGCCCACCAACGTTAACGGTTAACCGAGCTCGAGAGTGGCCACTGGCCACACTGCGACACTCTTCGAGACCTG
GGACCGCAGAAACCCTAGTGCGACACCTTTACTCATCGAGCCCTTTATCCGAGGCATGCAGTCTTGGTGCGGGGG
ATCGCAGTCACGGTGTCCGTCCGAAGAGCCCTCAGATCTGTCCCTCGTATATGCCAATGCAATGAACGAGCATGG
CTTCTCAAGCGGGACCAAACGACGTAGTAGCCGCACCATCTTCAAAGAAATTGGTCCACCAATCTACAAGTTCAA
CACCGTCCTCGACGTACTCTACGCATTGATCGATGCCATTCGAGTCCATCAACGTATGGTCCAACAAGCAGGAGT
CCTGCACGGCAATGTCAGCATTAACAGCATCATCTTTGGGGGAGTAGTACCCGGTGCCGACTCTGAGGAAGGACG
GCGAGTATCTCTCGTCGACTTCGATATCGTGCCTACCTCCTTCGACCGCTCTGATGCACTTTCGGATGAGCTTAG
GACTGGCACCCGCATGTTCCAATCCCTCAACGCCCTCAAAACCTGGCGTCCACACGACTACTTGGATGACCTCGA
GTCGTTTCTCTACGTCCTAGCCTACCTCGTCTTCGCCTTTCCGAGTCCGGGTGCCAGCGTCACGGTCAAACGCAA
GCTACCGATGGACCTTCAAGATTGGAACGCACGCGACTTACGCAGAGCCTTCAATAGCAAATCGGAATTCATCGA
CTACGGACCTCAGGGTTCAGACCTCCCGGTTCCCCCGATGTGGGGACCTCACATATTCACCCTCATCGACGACCT
TTGTCTCCATTTCCAACCCATCCACACCACATCGTCTCGCATGCGCAGTCGGAGTCTGTCCACCACCCACCGCGA
AAACATCGAAATCTCGTTCAAGGAGAAGTATCTTGATAATCGTGTTGTAGATGGGCGGTATGATGAGGTTGTGGG
GTACTTTGAGTCGGCCATCAAGAGTATCCTTGCGGAACAGGATAGCGCTAATGACTCGGAGCAGTCCACTTTGTC
CGACTCCCTCTCCCACTCCAGGCCTTCGAAAGGGCGCCGGGAAGAGGGGATCTGAGGAACCCTACCCAGGCCATG
ACGCCGAGGAGCCTTCCCCCAAGCAAACTAAGTTCCCGTCTTCGCAATTGATTCATCATTTATGTAGATCATCCC
CTCTTTTCACTGGTATTCTTACACTTATTAATATCTATCTATCCCCTGCCGCACTTTGAATTCTATCTCATCTGC
ATATTCCTGACCATGTATCATATTCTTACTATATACTTGCGCGCTTGTTACCACAACGGACTTTAGATTGTAGAC
TATAGTTACGCTAGTACATGGTTTGAAAACATCGGACCCGGTGGGGCGCCTGTCATGGCCGTTCAAGTTAGCCAT
AAAGACCCATCCCGATTCCCAATAAATCTAGTCGCAACAGTGTAACATCCATCGGTATCGGTAATCTAAACGAGA
GGTTTT
Length 1581

Gene

Sequence id CopciAB_502291.T0
Sequence >CopciAB_502291.T0
ATCTTGAACCTTGACCACCACCCAGCAGTGGCACTGAGTTTTTACTTCCATCTTACCTCCACCCTCAGATAAGGT
AAGCCCCTCTACAGTATTCCTAGCTGGTACTCTGAACTCATCCATTATCTGCTGACCCAATCTTTTTCACCTGCA
CTCAGCAACCGCCCACCAACGTTAACGGTTAACCGAGCTCGAGAGTGGCCACTGGCCACACTGCGACACTCTTCG
AGACCTGGGACCGCAGAAACCCTAGTGCGACACCTTTACTCATCGAGCCCTTTATCCGAGGCATGCAGTCTTGGT
GCGGGGGATCGCAGTCACGGTGTCCGTCCGAAGAGCCCTCAGATCTGTCCCTCGTATATGCCAATGCAATGAACG
AGCATGGCTTCTCAAGCGGGACCAAACGACGTAGTAGCCGCACCATCTTCAAAGAAATTGGTCCACCAATCTACA
AGTTCAACACCGTCCTCGACGTACTCTACGCATTGATCGATGCCATTCGAGGTGAGAAAGAAGAAATAATTACAT
CTCCAAACTTCCACCGTGACCGCTGACATCCCGTGCTCGCGTTGGTTCGGCAGTCCATCAACGTATGGTCCAACA
AGCAGGAGTCCTGCACGGCAATGTCAGCATTAACAGCATCATCTTTGGGGGAGTAGTACCCGGTGCCGACTCTGA
GGAAGGACGGCGAGTATCTCTCGTCGACTTCGATATCGTGCCTACCTCCTTCGACCGCTCTGATGCACTTTCGGA
TGAGCTTAGGACTGTAAGTTCCGGCACTCTCCACAACCATACCATCTCTTACTGACTCCCAACAAAGGGCACCCG
CATGTTCCAATCCCTCAACGCCCTCAAAACCTGGCGTCCACACGACTACTTGGATGACCTCGAGTCGTTTCTCTA
CGTCCTAGCCTACCTCGTCTTCGCCTTTCCGAGTCCGGGTGCCAGCGTCACGGTCAAACGCAAGCTACCGATGGA
CCTTCAAGATTGGAACGCACGCGACTTACGCAGAGCCTTCAATAGCAAATCGGAATTCATCGACTACGGACCTCA
GGGTTCAGACCTCCCGGTTCCCCCGATGTGGGGACCTCACATATTCACCCTCATCGACGACCTTTGTCTCCATTT
CCAACCCATCCACACCACATCGTCTCGCATGCGCAGTCGGAGTCTGTCCACCACCCACCGCGAAAACATCGAAAT
CTCGTTCAAGGAGAAGTATCTTGATAATCGTGTTGTAGATGGGCGGTATGATGAGGTTGTGGGGTACTTTGAGTC
GGCCATCAAGAGTATCCTTGCGGAACAGGATAGCGCTAATGACTCGGAGCAGTCCACTTTGTCCGACTCCCTCTC
CCACTCCAGGCCTTCGAAAGGGCGCCGGGAAGAGGGGATCTGAGGAACCCTACCCAGGCCATGACGCCGAGGAGC
CTTCCCCCAAGCAAACTAAGTTCCCGTCTTCGCAATTGATTCATCATTTATGTAGATCATCCCCTCTTTTCACTG
GTATTCTTACACTTATTAATATCTATCTATCCCCTGCCGCACTTTGAATTCTATCTCATCTGCATATTCCTGACC
ATGTATCATATTCTTACTATATACTTGCGCGCTTGTTACCACAACGGACTTTAGATTGTAGACTATAGTTACGCT
AGTACATGGTTTGAAAACATCGGACCCGGTGGGGCGCCTGTCATGGCCGTTCAAGTTAGCCATAAAGACCCATCC
CGATTCCCAATAAATCTAGTCGCAACAGTGTAACATCCATCGGTATCGGTAATCTAAACGAGAGGTTTT
Length 1794