CopciAB_502519
Coprinopsis cinerea A43mutB43mut pab1-1 #326

General data

Systematic name CopciAB_502519 Strain Coprinopsis cinerea Okayama 7
Standard name - Synonyms 502519
Uniprot id Functional description PKL CAK Fmp29-like protein kinase subdomain-containing protein
Location scaffold_11:642539..643249 Strand +
Gene length (nt) 711 Transcript length (nt) 711
CDS length (nt) 711 Protein length (aa) 236

Reciprocal best hits in model fungi

Strain name Gene / Protein name

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
Agrocybe aegerita Agrae_CAA7270766 27.1 1.972E-7 51

Expression

Name Summary Attribution Assay type
Carbon metabolism Transcriptional changes along alternative morphogenetic paths of C. cinerea Xie et al. 2020 RNA-Seq
Sample Mean cpm SD cpm Se of mean
sclerotia 0 0 0
oidia 0 0 0
vegetative_mycelium 0 0 0
primordia 0 0 0
hyphal_knot 0 0 0
young_fruiting_body 0 0 0
Complex carbon sources 1 (long incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control - glucose 0 0 0
Wheat bran 0 0 0
Horse manure 0 0 0
Oak leaves 0 0 0
Hay 0 0 0
Corn stalk 0 0 0
Pectine 0 0 0
Microcrystalline cellulose 0 0 0
Xylose 0 0 0
Cellobiose 0 0 0
Lignin 0 0 0
Apple peels 0 0 0
Coprinopsis challenged with bacteria Transcriptional response to Bacillus subtilis and Escherichia coli. Kombrink et al. 2018 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control 0 0 0
Bsubtilis 0 0 0
Ecoli 0 0 0
Early development 1 Time series expression profiling of basidiospore and oidium germination Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
BS 0h 0 0 0
BS 4h 0 0 0
BS 8h 0.0096 0.0166 0.0096
BS 12h 0.0082 0.0142 0.0082
Oidia 0 h 0 0 0
Oidia 18 h 0 0 0
Sclerotia 0 0 0
Early development 2 Time series expression profiling of mycelial growth, light induction and fruiting body initiation. Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
DM 12h 0 0 0
DM 36h 0 0 0
DM 60h 0 0 0
DM 84h 0 0 0
DM 108h 0 0 0
DM 132h 0 0 0
DM 156hAE 0 0 0
ELI1hAE 0 0 0
ELI2hAE 0 0 0
LI2hAE 0 0 0
LI6hAE 0 0 0
LI12hAE 0.0431 0.0746 0.0431
LI18hAE 0 0 0
LI 24hAE 0 0 0
DM 156hAM 0.0155 0.0268 0.0155
ELI1hAM 0 0 0
ELI2hAM 0 0 0
LI2hAM 0 0 0
LI6hAM 0 0 0
LI12hAM 0 0 0
LI18hAM 0 0 0
LI 24hAM 0 0 0
LI 24hHK 0 0 0
L/D 6h 0 0 0
L/D 12h 0 0 0
L/D 18h 0 0 0
L/D 24h 0 0 0
Fruiting body development RNA-Seq analysis of fruiting body development Krizsan et al. 2019 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Vegetative mycelium 0 0 0
Hyphal knots 0 0 0
Primordium 1 0 0 0
Primordium 2 0 0 0
Young Fruiting body cap 0 0 0
Younf fruiting body gill 0 0 0
Young fruiting body stipe 0 0 0
Mature fruiting body cap_gill 0 0 0
Mature fruiting body stipe 0 0 0
Nitrogen sources (12h incubation) Expression profiling on diverse nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Complete medium - control 0 0 0
NH4NO3 0 0 0
Proline 0 0 0
Tryptophan 0 0 0
Isoleucin 0 0 0
Arginine 0 0 0
Metionine 0 0 0
NaNO3 0 0 0
Plant biomass (12h incubation) Expression profiling on diverse plant biomasses as carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 0 0 0
Citrus peel 0 0 0
Poplar leaves 0 0 0
Typha leaves 0 0 0
Overwintered Salix leaves 0 0 0
Reed flowering 0 0 0
Tigernut 0 0 0
Energy cane 0 0 0
Guar gum 0 0 0
Apple peels 0 0 0
Cellobiose 0 0 0
Corn stalk 0 0 0
Horse manure 0 0 0
Lignin 0 0 0
Microcrystalline cellulose 0 0 0
Oak leaves 0 0 0
Pectin esterified 0 0 0
Poplar sawdust 0 0 0
Wheat bran 0 0 0
Chlamydomonas reinhardtii 0 0 0
Vertatryl alcohol 0 0 0
Furfural 0 0 0
Autoclaved mycelium 0 0 0
Simple and complex carbon and nitrogen sources Expression profiling on diverse complex carbon and nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 0 0 0
Ribose 0 0 0
Mannose 0 0 0
Fructose 0 0 0
Arabinose 0 0 0
Xylose 0 0 0
Galacturonic acid 0 0 0
Rhamnogalacturonan 0 0 0
Pectin esterified 0 0 0
Polygalacturonic acid 0 0 0
Sodium acetate 0 0 0
No nitrogen 0 0 0
BSA 0 0 0
Glutamine 0 0 0
No phosphate 0 0 0
No carbon 0 0 0
No sulphur 0 0 0
Simple and complex carbon sources (12h incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 0 0 0
Amylose 0 0 0
Fucose 0 0 0
Galactose 0 0 0
Lactose 0 0 0
Maltose 0 0 0
Mannitol 0 0 0
Rhamnose 0 0 0
Sorbitol 0 0 0
Trehalose 0 0 0
Glycerol 0 0 0
Glucuronic acid 0 0 0
Arabinan 0 0 0
Galactan 0 0 0
Galactomannan 0 0 0
Glucan 0 0 0
Xylan 0 0 0
Xyloglucan 0 0 0
Arabinogalactan 0 0 0
Pectin 0 0 0
Rhamnogalacturonan 0 0 0
Polygalacturonic acid 0 0 0
Mannan 0 0 0
Amylopectin 0 0 0
Inulin 0 0 0
BSA 0 0 0
Starvation induced by water agar transfer Expression profiling on starvation induced by transfer to water agar Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Control 0 0 0
2h WAT 0 0 0
4h WAT 0 0 0
8h WAT 0 0 0
16h WAT 0 0 0
24h WAT 0 0 0
WAT hyphal knot -30h 0.005 0.0086 0.005
WAT hyphal knot -22h 0 0 0
WAT hyphal knot -15h 0 0 0
WAT hyphal knot -7.5h 0 0 0
WAT hyphal knot 0 0 0
WAT hyphal knot +7.5h 0 0 0
Straw time series Time series expression profiling on straw as a carbon source Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 0 0 0
Straw 3h 0 0 0
Straw 6h 0 0 0
Straw 12h 0 0 0
Straw 24h 0 0 0
Stress conditions 1 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 0 0 0
Frost (-20C, 30min) 0.0018 0.0032 0.0018
Heat shock (47C, 2h) 0.038 0.0659 0.038
High CO2 0 0 0
Drought (4% agar, 12h) 0 0 0
Oxidative (1mM H2O2, 3h) 0 0 0
Acidic (pH4, 3h) 0 0 0
Alkaline (pH9, 3h) 0 0 0
Osmotic (sorbitol 2h) 0 0 0
CongoRed (3h) 0 0 0
Cobalt chloride control 0 0 0
Cobalt chloride 2mM 0 0 0
Stress conditions 2 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 0 0 0
Cold stimulation 0.0279 0.0483 0.0279
Scratched surface 0 0 0
Ca2+, 200mM, 24h 0 0 0
Cu2+, 2mM, 6h 0 0 0
Voriconazole 0 0 0
Trichoderma interaction, early 0 0 0
Trichoderma interaction 60h 0 0 0
Cobalt chloride 2mM repeat 0 0 0
Hypoxia 0 0 0
Hypoxia control 0 0 0
Protoplastation control 0 0 0
Protoplastation 3.5h 0 0 0
Protoplastation 1.5h 0 0 0

General data

Systematic name -
Protein id CopciAB_502519.T0
Description PKL CAK Fmp29-like protein kinase subdomain-containing protein

Annotation summary

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
No records

SignalP

Prediction Start End Score
No records

Transmembrane domains

Domain n Start End Length
No records

InterPro

Accession Description
IPR011009 Protein kinase-like domain superfamily

GO

Go id Term Ontology
No records

KEGG

KEGG Orthology
No records

EggNOG

COG category Description
G PKL CAK Fmp29-like protein kinase subdomain-containing protein

CAZy

Class Family Subfamily
No records

Transcription factor

Group
No records

Conservation of CopciAB_502519 across fungi.

Arrow shows the origin of gene family containing CopciAB_502519.

Protein

Sequence id CopciAB_502519.T0
Sequence >CopciAB_502519.T0
MQPSVSVTKPQKLPSDWSTQLGDLDIPLSDAIHEEWELSLGIDVRALVFAAMHTFGFNPSHPAPRLSSLTSGGYN
EIFVATFAREPDGYDGLQVVIRIPAKNDRLLGRMEANVALMTYAKYCRGLPVPKVITWCDGTKEDGNPIGAPYIM
MEHLDMTKRWRVLWDTYTPNWEFWYRMMDITSGGHASLARPLPFDGLGSLYFSSSVGDHKQGHQRETVEELQKAE
TYRLDPLFWVG
Length 236

Coding

Sequence id CopciAB_502519.T0
Sequence >CopciAB_502519.T0
ATGCAGCCTTCTGTCTCAGTCACCAAACCTCAAAAGCTCCCCTCGGATTGGTCCACGCAGCTGGGAGACCTTGAC
ATTCCACTGTCTGATGCCATTCACGAAGAGTGGGAGCTCTCTCTCGGAATCGATGTACGAGCCCTCGTCTTCGCC
GCAATGCACACCTTTGGCTTCAATCCCTCTCACCCTGCCCCCCGACTCTCGAGTCTAACGTCTGGGGGGTACAAT
GAAATATTCGTCGCGACCTTTGCAAGAGAGCCTGACGGTTATGATGGGCTCCAAGTCGTCATCCGGATACCCGCA
AAGAACGATCGACTGCTGGGTAGGATGGAAGCCAACGTAGCTCTCATGACCTATGCGAAGTACTGTCGGGGTCTT
CCGGTGCCCAAGGTCATAACATGGTGCGATGGGACAAAGGAAGACGGAAATCCCATCGGCGCGCCCTACATCATG
ATGGAGCACCTCGACATGACCAAGCGCTGGCGTGTCCTTTGGGATACTTATACTCCCAACTGGGAATTCTGGTAC
AGGATGATGGATATAACATCAGGCGGACACGCTTCCTTGGCCCGACCGCTACCCTTTGATGGTTTGGGTTCCCTC
TACTTCTCTAGTTCCGTTGGCGACCACAAGCAAGGTCATCAAAGGGAGACTGTTGAAGAGCTGCAGAAGGCGGAG
ACATATCGCTTGGACCCCTTGTTTTGGGTGGGATAG
Length 711

Transcript

Sequence id CopciAB_502519.T0
Sequence >CopciAB_502519.T0
ATGCAGCCTTCTGTCTCAGTCACCAAACCTCAAAAGCTCCCCTCGGATTGGTCCACGCAGCTGGGAGACCTTGAC
ATTCCACTGTCTGATGCCATTCACGAAGAGTGGGAGCTCTCTCTCGGAATCGATGTACGAGCCCTCGTCTTCGCC
GCAATGCACACCTTTGGCTTCAATCCCTCTCACCCTGCCCCCCGACTCTCGAGTCTAACGTCTGGGGGGTACAAT
GAAATATTCGTCGCGACCTTTGCAAGAGAGCCTGACGGTTATGATGGGCTCCAAGTCGTCATCCGGATACCCGCA
AAGAACGATCGACTGCTGGGTAGGATGGAAGCCAACGTAGCTCTCATGACCTATGCGAAGTACTGTCGGGGTCTT
CCGGTGCCCAAGGTCATAACATGGTGCGATGGGACAAAGGAAGACGGAAATCCCATCGGCGCGCCCTACATCATG
ATGGAGCACCTCGACATGACCAAGCGCTGGCGTGTCCTTTGGGATACTTATACTCCCAACTGGGAATTCTGGTAC
AGGATGATGGATATAACATCAGGCGGACACGCTTCCTTGGCCCGACCGCTACCCTTTGATGGTTTGGGTTCCCTC
TACTTCTCTAGTTCCGTTGGCGACCACAAGCAAGGTCATCAAAGGGAGACTGTTGAAGAGCTGCAGAAGGCGGAG
ACATATCGCTTGGACCCCTTGTTTTGGGTGGGATAG
Length 711

Gene

Sequence id CopciAB_502519.T0
Sequence >CopciAB_502519.T0
ATGCAGCCTTCTGTCTCAGTCACCAAACCTCAAAAGCTCCCCTCGGATTGGTCCACGCAGCTGGGAGACCTTGAC
ATTCCACTGTCTGATGCCATTCACGAAGAGTGGGAGCTCTCTCTCGGAATCGATGTACGAGCCCTCGTCTTCGCC
GCAATGCACACCTTTGGCTTCAATCCCTCTCACCCTGCCCCCCGACTCTCGAGTCTAACGTCTGGGGGGTACAAT
GAAATATTCGTCGCGACCTTTGCAAGAGAGCCTGACGGTTATGATGGGCTCCAAGTCGTCATCCGGATACCCGCA
AAGAACGATCGACTGCTGGGTAGGATGGAAGCCAACGTAGCTCTCATGACCTATGCGAAGTACTGTCGGGGTCTT
CCGGTGCCCAAGGTCATAACATGGTGCGATGGGACAAAGGAAGACGGAAATCCCATCGGCGCGCCCTACATCATG
ATGGAGCACCTCGACATGACCAAGCGCTGGCGTGTCCTTTGGGATACTTATACTCCCAACTGGGAATTCTGGTAC
AGGATGATGGATATAACATCAGGCGGACACGCTTCCTTGGCCCGACCGCTACCCTTTGATGGTTTGGGTTCCCTC
TACTTCTCTAGTTCCGTTGGCGACCACAAGCAAGGTCATCAAAGGGAGACTGTTGAAGAGCTGCAGAAGGCGGAG
ACATATCGCTTGGACCCCTTGTTTTGGGTGGGATAG
Length 711