CopciAB_503441
Coprinopsis cinerea A43mutB43mut pab1-1 #326

General data

Systematic name CopciAB_503441 Strain Coprinopsis cinerea Okayama 7
Standard name - Synonyms 503441
Uniprot id Functional description Protein kinase subdomain-containing protein PKL ccin3
Location scaffold_3:17646..18683 Strand -
Gene length (nt) 1038 Transcript length (nt) 984
CDS length (nt) 984 Protein length (aa) 327

Reciprocal best hits in model fungi

Strain name Gene / Protein name

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
0

Expression

Name Summary Attribution Assay type
Carbon metabolism Transcriptional changes along alternative morphogenetic paths of C. cinerea Xie et al. 2020 RNA-Seq
Sample Mean cpm SD cpm Se of mean
sclerotia 0 0 0
oidia 0 0 0
vegetative_mycelium 0 0 0
primordia 0 0 0
hyphal_knot 0 0 0
young_fruiting_body 0 0 0
Complex carbon sources 1 (long incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control - glucose 0 0 0
Wheat bran 0 0 0
Horse manure 0 0 0
Oak leaves 0 0 0
Hay 0 0 0
Corn stalk 0 0 0
Pectine 0 0 0
Microcrystalline cellulose 0 0 0
Xylose 0 0 0
Cellobiose 0 0 0
Lignin 0 0 0
Apple peels 0 0 0
Coprinopsis challenged with bacteria Transcriptional response to Bacillus subtilis and Escherichia coli. Kombrink et al. 2018 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control 0 0 0
Bsubtilis 0 0 0
Ecoli 0 0 0
Early development 1 Time series expression profiling of basidiospore and oidium germination Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
BS 0h 0 0 0
BS 4h 0 0 0
BS 8h 0 0 0
BS 12h 0 0 0
Oidia 0 h 0 0 0
Oidia 18 h 0 0 0
Sclerotia 0 0 0
Early development 2 Time series expression profiling of mycelial growth, light induction and fruiting body initiation. Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
DM 12h 0 0 0
DM 36h 0 0 0
DM 60h 0.0141 0.0243 0.0141
DM 84h 0 0 0
DM 108h 0 0 0
DM 132h 0 0 0
DM 156hAE 0 0 0
ELI1hAE 0 0 0
ELI2hAE 0 0 0
LI2hAE 0.0155 0.0269 0.0155
LI6hAE 0 0 0
LI12hAE 0 0 0
LI18hAE 0 0 0
LI 24hAE 0 0 0
DM 156hAM 0 0 0
ELI1hAM 0 0 0
ELI2hAM 0 0 0
LI2hAM 0 0 0
LI6hAM 0.0149 0.0257 0.0149
LI12hAM 0 0 0
LI18hAM 0.0057 0.0099 0.0057
LI 24hAM 0 0 0
LI 24hHK 0 0 0
L/D 6h 0 0 0
L/D 12h 0 0 0
L/D 18h 0 0 0
L/D 24h 0 0 0
Fruiting body development RNA-Seq analysis of fruiting body development Krizsan et al. 2019 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Vegetative mycelium 0 0 0
Hyphal knots 0 0 0
Primordium 1 0 0 0
Primordium 2 0 0 0
Young Fruiting body cap 0 0 0
Younf fruiting body gill 0 0 0
Young fruiting body stipe 0 0 0
Mature fruiting body cap_gill 0 0 0
Mature fruiting body stipe 0 0 0
Nitrogen sources (12h incubation) Expression profiling on diverse nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Complete medium - control 0 0 0
NH4NO3 0 0 0
Proline 0 0 0
Tryptophan 0 0 0
Isoleucin 0 0 0
Arginine 0 0 0
Metionine 0 0 0
NaNO3 0 0 0
Plant biomass (12h incubation) Expression profiling on diverse plant biomasses as carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 0 0 0
Citrus peel 0 0 0
Poplar leaves 0 0 0
Typha leaves 0 0 0
Overwintered Salix leaves 0 0 0
Reed flowering 0 0 0
Tigernut 0 0 0
Energy cane 0 0 0
Guar gum 0 0 0
Apple peels 0.0731 0.1266 0.0731
Cellobiose 0 0 0
Corn stalk 0 0 0
Horse manure 0 0 0
Lignin 0 0 0
Microcrystalline cellulose 0 0 0
Oak leaves 0 0 0
Pectin esterified 0 0 0
Poplar sawdust 0.0129 0.0224 0.0129
Wheat bran 0.0351 0.0608 0.0351
Chlamydomonas reinhardtii 0 0 0
Vertatryl alcohol 0 0 0
Furfural 0 0 0
Autoclaved mycelium 0 0 0
Simple and complex carbon and nitrogen sources Expression profiling on diverse complex carbon and nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 0 0 0
Ribose 0 0 0
Mannose 0 0 0
Fructose 0 0 0
Arabinose 0 0 0
Xylose 0 0 0
Galacturonic acid 0 0 0
Rhamnogalacturonan 0 0 0
Pectin esterified 0 0 0
Polygalacturonic acid 0 0 0
Sodium acetate 0.0296 0.0513 0.0296
No nitrogen 0 0 0
BSA 0 0 0
Glutamine 0 0 0
No phosphate 0 0 0
No carbon 0 0 0
No sulphur 0 0 0
Simple and complex carbon sources (12h incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 0 0 0
Amylose 0 0 0
Fucose 0 0 0
Galactose 0 0 0
Lactose 0 0 0
Maltose 0 0 0
Mannitol 0 0 0
Rhamnose 0 0 0
Sorbitol 0 0 0
Trehalose 0 0 0
Glycerol 0 0 0
Glucuronic acid 0 0 0
Arabinan 0 0 0
Galactan 0 0 0
Galactomannan 0 0 0
Glucan 0 0 0
Xylan 0 0 0
Xyloglucan 0.0486 0.0487 0.0281
Arabinogalactan 0 0 0
Pectin 0 0 0
Rhamnogalacturonan 0 0 0
Polygalacturonic acid 0 0 0
Mannan 0 0 0
Amylopectin 0 0 0
Inulin 0 0 0
BSA 0 0 0
Starvation induced by water agar transfer Expression profiling on starvation induced by transfer to water agar Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Control 0.0141 0.0243 0.0141
2h WAT 0 0 0
4h WAT 0 0 0
8h WAT 0 0 0
16h WAT 0 0 0
24h WAT 0 0 0
WAT hyphal knot -30h 0 0 0
WAT hyphal knot -22h 0.0082 0.0142 0.0082
WAT hyphal knot -15h 0 0 0
WAT hyphal knot -7.5h 0 0 0
WAT hyphal knot 0.0106 0.0183 0.0106
WAT hyphal knot +7.5h 0 0 0
Straw time series Time series expression profiling on straw as a carbon source Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 0 0 0
Straw 3h 0 0 0
Straw 6h 0 0 0
Straw 12h 0.0156 0.027 0.0156
Straw 24h 0 0 0
Stress conditions 1 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 0 0 0
Frost (-20C, 30min) 0 0 0
Heat shock (47C, 2h) 0 0 0
High CO2 0 0 0
Drought (4% agar, 12h) 0.0061 0.0106 0.0061
Oxidative (1mM H2O2, 3h) 0 0 0
Acidic (pH4, 3h) 0 0 0
Alkaline (pH9, 3h) 0 0 0
Osmotic (sorbitol 2h) 0 0 0
CongoRed (3h) 0 0 0
Cobalt chloride control 0 0 0
Cobalt chloride 2mM 0.01 0.0174 0.01
Stress conditions 2 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 0 0 0
Cold stimulation 0 0 0
Scratched surface 0.0032 0.0056 0.0032
Ca2+, 200mM, 24h 0 0 0
Cu2+, 2mM, 6h 0 0 0
Voriconazole 0 0 0
Trichoderma interaction, early 0 0 0
Trichoderma interaction 60h 0.1692 0.2931 0.1692
Cobalt chloride 2mM repeat 0 0 0
Hypoxia 0.0121 0.0209 0.0121
Hypoxia control 0 0 0
Protoplastation control 0 0 0
Protoplastation 3.5h 0 0 0
Protoplastation 1.5h 0 0 0

General data

Systematic name -
Protein id CopciAB_503441.T0
Description Protein kinase subdomain-containing protein PKL ccin3

Annotation summary

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
No records

SignalP

Prediction Start End Score
No records

Transmembrane domains

Domain n Start End Length
No records

InterPro

Accession Description
No records

GO

Go id Term Ontology
No records

KEGG

KEGG Orthology
No records

EggNOG

COG category Description
G Protein kinase subdomain-containing protein PKL ccin3

CAZy

Class Family Subfamily
No records

Transcription factor

Group
No records

Conservation of CopciAB_503441 across fungi.

Arrow shows the origin of gene family containing CopciAB_503441.

Protein

Sequence id CopciAB_503441.T0
Sequence >CopciAB_503441.T0
MFSTLVIHDCGTVDGELITVTLKASPSFPGAVWYQEDWDQPVPATWGPKDVSAFDETLELRLVGRISEGRIGVAY
IAKVVSATRNGADVRTTLPPTLCLKFAKPEFSRSLAREAWVYEQLESLQGTSVPSSFGFYASTAAEQPSFPNLEF
EPWRNREVLFEDTDKVPSNIDEYASPDWLTDDVPEYYDEGTFGDPLYKLNSPWFEWARLPDNPTISVLVLELLGE
ACTGVKTAADKQAIKEVMDDLAEAGVLHDNITPWNTLAFKPSSHGEARLCPRHNVVHPWRIIDFDRSRMVNPKNL
GELGKRRIANTERRLNRAVAFQFWCWN
Length 327

Coding

Sequence id CopciAB_503441.T0
Sequence >CopciAB_503441.T0
ATGTTCTCGACATTAGTGATTCACGACTGTGGAACTGTTGACGGGGAGCTGATAACGGTCACTCTCAAAGCTTCG
CCCTCGTTCCCTGGTGCTGTCTGGTATCAGGAAGACTGGGATCAGCCTGTTCCTGCCACATGGGGACCGAAGGAC
GTCTCCGCTTTTGACGAGACCCTCGAGCTCAGGCTTGTAGGCCGAATCTCAGAGGGCCGAATCGGTGTAGCTTAC
ATCGCAAAGGTCGTCTCTGCAACGCGCAATGGCGCCGACGTCAGGACAACACTCCCGCCCACCCTGTGCCTCAAA
TTCGCAAAGCCCGAATTCAGTCGTAGCCTCGCGAGGGAGGCGTGGGTCTACGAACAGCTGGAGTCTCTTCAGGGT
ACCTCTGTGCCCAGTTCCTTTGGGTTCTACGCGTCCACTGCAGCAGAACAGCCCTCTTTCCCCAACCTCGAATTT
GAGCCGTGGAGGAACAGGGAGGTGTTGTTCGAGGACACAGACAAGGTCCCGAGTAACATCGACGAATATGCATCC
CCGGACTGGCTGACCGACGATGTGCCCGAGTATTACGACGAAGGGACGTTTGGCGACCCGCTCTACAAGTTGAAT
TCGCCCTGGTTCGAGTGGGCTCGCCTTCCCGACAACCCAACCATCTCGGTACTTGTCCTCGAGCTGCTTGGGGAA
GCCTGTACTGGGGTAAAAACCGCTGCCGACAAGCAGGCTATCAAGGAAGTAATGGACGACTTGGCGGAAGCTGGC
GTGCTGCATGACAACATCACCCCGTGGAACACGCTCGCATTCAAACCCTCGTCGCACGGTGAGGCTCGCCTATGC
CCTCGACACAATGTCGTCCATCCCTGGAGGATAATCGACTTTGATCGTTCAAGGATGGTAAATCCCAAAAACCTG
GGCGAGCTTGGCAAACGTCGCATTGCGAATACCGAGCGCAGACTGAACCGTGCAGTGGCCTTCCAGTTTTGGTGC
TGGAATTAA
Length 984

Transcript

Sequence id CopciAB_503441.T0
Sequence >CopciAB_503441.T0
ATGTTCTCGACATTAGTGATTCACGACTGTGGAACTGTTGACGGGGAGCTGATAACGGTCACTCTCAAAGCTTCG
CCCTCGTTCCCTGGTGCTGTCTGGTATCAGGAAGACTGGGATCAGCCTGTTCCTGCCACATGGGGACCGAAGGAC
GTCTCCGCTTTTGACGAGACCCTCGAGCTCAGGCTTGTAGGCCGAATCTCAGAGGGCCGAATCGGTGTAGCTTAC
ATCGCAAAGGTCGTCTCTGCAACGCGCAATGGCGCCGACGTCAGGACAACACTCCCGCCCACCCTGTGCCTCAAA
TTCGCAAAGCCCGAATTCAGTCGTAGCCTCGCGAGGGAGGCGTGGGTCTACGAACAGCTGGAGTCTCTTCAGGGT
ACCTCTGTGCCCAGTTCCTTTGGGTTCTACGCGTCCACTGCAGCAGAACAGCCCTCTTTCCCCAACCTCGAATTT
GAGCCGTGGAGGAACAGGGAGGTGTTGTTCGAGGACACAGACAAGGTCCCGAGTAACATCGACGAATATGCATCC
CCGGACTGGCTGACCGACGATGTGCCCGAGTATTACGACGAAGGGACGTTTGGCGACCCGCTCTACAAGTTGAAT
TCGCCCTGGTTCGAGTGGGCTCGCCTTCCCGACAACCCAACCATCTCGGTACTTGTCCTCGAGCTGCTTGGGGAA
GCCTGTACTGGGGTAAAAACCGCTGCCGACAAGCAGGCTATCAAGGAAGTAATGGACGACTTGGCGGAAGCTGGC
GTGCTGCATGACAACATCACCCCGTGGAACACGCTCGCATTCAAACCCTCGTCGCACGGTGAGGCTCGCCTATGC
CCTCGACACAATGTCGTCCATCCCTGGAGGATAATCGACTTTGATCGTTCAAGGATGGTAAATCCCAAAAACCTG
GGCGAGCTTGGCAAACGTCGCATTGCGAATACCGAGCGCAGACTGAACCGTGCAGTGGCCTTCCAGTTTTGGTGC
TGGAATTAA
Length 984

Gene

Sequence id CopciAB_503441.T0
Sequence >CopciAB_503441.T0
ATGTTCTCGACATTAGTGATTCACGACTGTGGAACTGTTGACGGGGAGCTGATAACGGTCACTCTCAAAGCTTCG
CCCTCGTTCCCTGGTGCTGTCTGGTATCAGGAAGACTGGGATCAGCCTGTTCCTGCCACATGGGGACCGAAGGAC
GTCTCCGCTTTTGACGAGACCCTCGAGCTCAGGCTTGTAGGCCGAATCTCAGAGGGCCGAATCGGTGTAGCTTAC
ATCGCAAAGGTCGTCTCTGCAACGCGCAATGGCGCCGACGTCAGGACAACACTCCCGCCCACCCTGTGCCTCAAA
TTCGCAAAGCCCGAATTCAGTCGTAGCCTCGCGAGGGAGGCGTGGGTCTACGAACAGCTGGAGTCTCTTCAGGGT
ACCTCTGTGCCCAGTTCCTTTGGGTTCTACGCGTCCACTGCAGCAGAACAGCCCTCTTTCCCCAACCTCGAATTT
GAGCCGTGGAGGAACAGGGAGGTGTTGTTCGAGGACACAGACAAGGTCCCGAGTAACATCGACGAATATGCATCC
CCGGACTGGCTGACCGACGATGTGCCCGAGTATTACGACGAAGGGACGTTTGGCGACCCGCTCTACAAGTTGAAT
TCGCCCTGGTTCGAGTGGGCTCGCCTTCCCGACAACCCAACCATCTCGGTACTTGTCCTCGAGCTGCTTGGGGAA
GCCTGTACTGGGGTAAAAACCGCTGCCGACAAGTGAGTGAACTATGCACCTTATTATGATTGCTCGTACTCAACG
TAACATCCCAGGCAGGCTATCAAGGAAGTAATGGACGACTTGGCGGAAGCTGGCGTGCTGCATGACAACATCACC
CCGTGGAACACGCTCGCATTCAAACCCTCGTCGCACGGTGAGGCTCGCCTATGCCCTCGACACAATGTCGTCCAT
CCCTGGAGGATAATCGACTTTGATCGTTCAAGGATGGTAAATCCCAAAAACCTGGGCGAGCTTGGCAAACGTCGC
ATTGCGAATACCGAGCGCAGACTGAACCGTGCAGTGGCCTTCCAGTTTTGGTGCTGGAATTAA
Length 1038