CopciAB_504019
Coprinopsis cinerea A43mutB43mut pab1-1 #326

General data

Systematic name CopciAB_504019 Strain Coprinopsis cinerea Okayama 7
Standard name exgA Synonyms 504019
Uniprot id Functional description Belongs to the glycosyl hydrolase 5 (cellulase A) family
Location scaffold_3:1094218..1095750 Strand +
Gene length (nt) 1533 Transcript length (nt) 1170
CDS length (nt) 1170 Protein length (aa) 389

Reciprocal best hits in model fungi

Strain name Gene / Protein name

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
Pleurotus eryngii ATCC 90797 Pleery1_1445833 68.6 5.63E-184 572
Agrocybe aegerita Agrae_CAA7266842 64.5 1.296E-183 571
Hypsizygus marmoreus strain 51987-8 Hypma_RDB26208 64.6 1.596E-182 568
Pleurotus ostreatus PC15 PleosPC15_2_1067593 66.2 6.848E-180 560
Pleurotus ostreatus PC9 PleosPC9_1_86868 65.9 7.329E-179 557
Schizophyllum commune H4-8 Schco3_2627090 65.5 1.549E-173 542
Ganoderma sp. 10597 SS1 v1.0 Gansp1_123281 62.3 9.616E-168 525
Flammulina velutipes Flave_chr09AA01159 61.2 1.057E-166 522
Agaricus bisporus var bisporus (H97) Agabi_varbisH97_2_184098 58.6 2.053E-165 518
Agaricus bisporus var. burnettii JB137-S8 Agabi_varbur_1_75231 58.8 2.139E-165 518
Lentinula edodes NBRC 111202 Lenedo1_1111530 59.3 5.14E-158 497
Lentinula edodes W1-26 v1.0 Lentinedodes1_11327 59.3 5.101E-158 497
Auricularia subglabra Aurde3_1_1276417 58.1 7.552E-150 474
Grifola frondosa Grifr_OBZ72452 52 5.435E-138 439

Expression

Name Summary Attribution Assay type
Carbon metabolism Transcriptional changes along alternative morphogenetic paths of C. cinerea Xie et al. 2020 RNA-Seq
Sample Mean cpm SD cpm Se of mean
sclerotia 0 0 0
oidia 0 0 0
vegetative_mycelium 0 0 0
primordia 0 0 0
hyphal_knot 0 0 0
young_fruiting_body 0 0 0
Complex carbon sources 1 (long incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control - glucose 0 0 0
Wheat bran 0 0 0
Horse manure 0 0 0
Oak leaves 0 0 0
Hay 0 0 0
Corn stalk 0 0 0
Pectine 0 0 0
Microcrystalline cellulose 0 0 0
Xylose 0 0 0
Cellobiose 0 0 0
Lignin 0 0 0
Apple peels 0 0 0
Coprinopsis challenged with bacteria Transcriptional response to Bacillus subtilis and Escherichia coli. Kombrink et al. 2018 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control 0 0 0
Bsubtilis 0 0 0
Ecoli 0 0 0
Early development 1 Time series expression profiling of basidiospore and oidium germination Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
BS 0h 0 0 0
BS 4h 0 0 0
BS 8h 0.0038 0.0066 0.0038
BS 12h 0 0 0
Oidia 0 h 0 0 0
Oidia 18 h 0 0 0
Sclerotia 0 0 0
Early development 2 Time series expression profiling of mycelial growth, light induction and fruiting body initiation. Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
DM 12h 0 0 0
DM 36h 0 0 0
DM 60h 0.0093 0.0161 0.0093
DM 84h 0 0 0
DM 108h 0 0 0
DM 132h 0 0 0
DM 156hAE 0.0101 0.0175 0.0101
ELI1hAE 0 0 0
ELI2hAE 0 0 0
LI2hAE 0 0 0
LI6hAE 0 0 0
LI12hAE 0.0208 0.036 0.0208
LI18hAE 0 0 0
LI 24hAE 0 0 0
DM 156hAM 0.0136 0.0236 0.0136
ELI1hAM 0 0 0
ELI2hAM 0 0 0
LI2hAM 0 0 0
LI6hAM 0 0 0
LI12hAM 0 0 0
LI18hAM 0.0022 0.0038 0.0022
LI 24hAM 0.0308 0.0534 0.0308
LI 24hHK 0 0 0
L/D 6h 0 0 0
L/D 12h 0 0 0
L/D 18h 0 0 0
L/D 24h 0.0066 0.0113 0.0066
Fruiting body development RNA-Seq analysis of fruiting body development Krizsan et al. 2019 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Vegetative mycelium 0 0 0
Hyphal knots 0 0 0
Primordium 1 0 0 0
Primordium 2 0 0 0
Young Fruiting body cap 0 0 0
Younf fruiting body gill 0 0 0
Young fruiting body stipe 0 0 0
Mature fruiting body cap_gill 0 0 0
Mature fruiting body stipe 0 0 0
Nitrogen sources (12h incubation) Expression profiling on diverse nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Complete medium - control 0 0 0
NH4NO3 0 0 0
Proline 0 0 0
Tryptophan 0 0 0
Isoleucin 0 0 0
Arginine 0 0 0
Metionine 0 0 0
NaNO3 0 0 0
Plant biomass (12h incubation) Expression profiling on diverse plant biomasses as carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 0 0 0
Citrus peel 0 0 0
Poplar leaves 0 0 0
Typha leaves 0 0 0
Overwintered Salix leaves 0 0 0
Reed flowering 0 0 0
Tigernut 0 0 0
Energy cane 0 0 0
Guar gum 0 0 0
Apple peels 0 0 0
Cellobiose 0 0 0
Corn stalk 0 0 0
Horse manure 0 0 0
Lignin 0 0 0
Microcrystalline cellulose 0 0 0
Oak leaves 0 0 0
Pectin esterified 0 0 0
Poplar sawdust 0 0 0
Wheat bran 0 0 0
Chlamydomonas reinhardtii 0 0 0
Vertatryl alcohol 0 0 0
Furfural 0 0 0
Autoclaved mycelium 0 0 0
Simple and complex carbon and nitrogen sources Expression profiling on diverse complex carbon and nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 0 0 0
Ribose 0 0 0
Mannose 0 0 0
Fructose 0 0 0
Arabinose 0 0 0
Xylose 0 0 0
Galacturonic acid 0 0 0
Rhamnogalacturonan 0 0 0
Pectin esterified 0 0 0
Polygalacturonic acid 0 0 0
Sodium acetate 0 0 0
No nitrogen 0 0 0
BSA 0 0 0
Glutamine 0 0 0
No phosphate 0 0 0
No carbon 0 0 0
No sulphur 0 0 0
Simple and complex carbon sources (12h incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 0 0 0
Amylose 0 0 0
Fucose 0 0 0
Galactose 0 0 0
Lactose 0 0 0
Maltose 0 0 0
Mannitol 0 0 0
Rhamnose 0 0 0
Sorbitol 0 0 0
Trehalose 0 0 0
Glycerol 0 0 0
Glucuronic acid 0 0 0
Arabinan 0 0 0
Galactan 0 0 0
Galactomannan 0 0 0
Glucan 0 0 0
Xylan 0 0 0
Xyloglucan 0 0 0
Arabinogalactan 0 0 0
Pectin 0 0 0
Rhamnogalacturonan 0 0 0
Polygalacturonic acid 0 0 0
Mannan 0 0 0
Amylopectin 0 0 0
Inulin 0 0 0
BSA 0 0 0
Starvation induced by water agar transfer Expression profiling on starvation induced by transfer to water agar Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Control 0.0093 0.0161 0.0093
2h WAT 0 0 0
4h WAT 0.0069 0.012 0.0069
8h WAT 0 0 0
16h WAT 0.0073 0.0127 0.0073
24h WAT 0 0 0
WAT hyphal knot -30h 0.0044 0.0077 0.0044
WAT hyphal knot -22h 0 0 0
WAT hyphal knot -15h 0 0 0
WAT hyphal knot -7.5h 0 0 0
WAT hyphal knot 0 0 0
WAT hyphal knot +7.5h 0 0 0
Straw time series Time series expression profiling on straw as a carbon source Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 0 0 0
Straw 3h 0 0 0
Straw 6h 0 0 0
Straw 12h 0 0 0
Straw 24h 0 0 0
Stress conditions 1 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 0.0109 0.0189 0.0109
Frost (-20C, 30min) 0.0045 0.0078 0.0045
Heat shock (47C, 2h) 0 0 0
High CO2 0.0106 0.0184 0.0106
Drought (4% agar, 12h) 0 0 0
Oxidative (1mM H2O2, 3h) 0.0018 0.0031 0.0018
Acidic (pH4, 3h) 0 0 0
Alkaline (pH9, 3h) 0 0 0
Osmotic (sorbitol 2h) 0 0 0
CongoRed (3h) 0 0 0
Cobalt chloride control 0.0391 0.0495 0.0286
Cobalt chloride 2mM 0 0 0
Stress conditions 2 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 0.1948 0.3375 0.1948
Cold stimulation 0 0 0
Scratched surface 0.0059 0.0102 0.0059
Ca2+, 200mM, 24h 0 0 0
Cu2+, 2mM, 6h 0 0 0
Voriconazole 0.0035 0.006 0.0035
Trichoderma interaction, early 0.0539 0.0933 0.0539
Trichoderma interaction 60h 0.3947 0.6836 0.3947
Cobalt chloride 2mM repeat 0 0 0
Hypoxia 0 0 0
Hypoxia control 0 0 0
Protoplastation control 0 0 0
Protoplastation 3.5h 0 0 0
Protoplastation 1.5h 0 0 0

General data

Systematic name exgA
Protein id CopciAB_504019.T0
Description Belongs to the glycosyl hydrolase 5 (cellulase A) family

Annotation summary

0 100 200 300 389

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
Pfam PF00150 Cellulase (glycosyl hydrolase family 5) IPR001547 75 312

SignalP

Prediction Start End Score
No records

Transmembrane domains

Domain n Start End Length
No records

InterPro

Accession Description
IPR001547 Glycoside hydrolase, family 5
IPR017853 Glycoside hydrolase superfamily

GO

Go id Term Ontology
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds MF
GO:0071704 organic substance metabolic process BP

KEGG

KEGG Orthology
K01210

EggNOG

COG category Description
G Belongs to the glycosyl hydrolase 5 (cellulase A) family

CAZy

Class Family Subfamily
GH GH5 GH5_9

Transcription factor

Group
No records

Conservation of CopciAB_504019 across fungi.

Arrow shows the origin of gene family containing CopciAB_504019.

Protein

Sequence id CopciAB_504019.T0
Sequence >CopciAB_504019.T0
MEVLPAPSSTDAPEVQLPAFEYGRDKIRAVNLGGWLVLEPWITPSFFERTNNTDVIDEYTLGALVDRAAALEMLT
QHWETWITEDDFIAIRAAGLTHVRIPLGFWSVPLTQDDVRTSVSSDPYIPGAWPYFLRGLTWARKHGVRVIVDLH
GAPGSQNGYDNSGQRTSGPQWALQPHFVTHTVDVVRFIAANVGGLIDVLELLNEPAGFRGDDWAAVIREFWIEGY
DAVRDAAGEDIHVMIGDAFLGVESWTDFLTPPRGHGVLMDFHEYQIFSHGELERSPQEHIDFACGYIDRLSSFAS
SNLWTVVGEWSNAITDCARWLNGRGVGARWDGTWYDTDQYHDTCEGYTGSYHNFSEEYMAFLRRYWEVQVEIGES
VQGWVFWTWKVCLS
Length 389

Coding

Sequence id CopciAB_504019.T0
Sequence >CopciAB_504019.T0
ATGGAAGTGCTCCCAGCGCCTTCAAGCACCGATGCACCAGAGGTCCAATTGCCCGCTTTCGAATACGGAAGAGAT
AAAATCCGAGCAGTCAATCTGGGAGGATGGCTCGTTCTAGAGCCTTGGATAACACCCAGCTTCTTTGAAAGGACG
AACAATACGGACGTCATAGACGAGTATACACTTGGGGCTCTTGTTGACCGTGCTGCTGCATTGGAAATGCTGACA
CAACATTGGGAAACGTGGATAACGGAAGACGACTTTATCGCCATTCGTGCGGCAGGCCTTACCCATGTTCGGATA
CCCCTCGGTTTCTGGTCCGTTCCCCTCACGCAAGACGACGTTCGCACTTCAGTTTCGTCCGACCCATACATTCCA
GGCGCGTGGCCGTACTTCCTTCGTGGCCTCACCTGGGCACGCAAACACGGCGTGCGAGTCATTGTCGATCTGCAC
GGTGCTCCAGGCTCACAGAACGGCTATGACAACTCCGGACAACGGACCTCCGGTCCTCAATGGGCTCTCCAACCG
CACTTTGTGACGCATACCGTCGACGTTGTGCGCTTCATTGCGGCGAATGTTGGCGGGTTAATCGATGTACTAGAA
CTCCTAAACGAACCCGCGGGCTTTAGAGGAGATGATTGGGCCGCAGTGATACGAGAGTTTTGGATAGAAGGGTAT
GATGCTGTTAGGGATGCGGCTGGGGAGGACATTCATGTTATGATTGGGGATGCGTTTCTGGGAGTTGAGTCATGG
ACTGATTTCCTGACACCTCCAAGAGGACATGGAGTTTTGATGGACTTCCACGAATACCAAATATTCAGTCACGGA
GAGCTGGAACGATCACCACAAGAACATATCGACTTTGCGTGCGGATATATCGACCGATTGTCTAGCTTTGCGTCG
TCGAACCTATGGACAGTCGTTGGTGAATGGTCGAACGCGATAACCGATTGCGCTCGCTGGTTAAATGGAAGAGGA
GTTGGTGCTCGGTGGGATGGCACCTGGTACGACACAGACCAATATCACGACACCTGCGAGGGGTACACCGGGAGC
TACCATAACTTCTCGGAAGAGTACATGGCATTTCTTAGAAGGTATTGGGAGGTTCAAGTCGAGATCGGAGAAAGC
GTCCAAGGCTGGGTGTTTTGGACATGGAAGGTGTGTCTATCTTAA
Length 1170

Transcript

Sequence id CopciAB_504019.T0
Sequence >CopciAB_504019.T0
ATGGAAGTGCTCCCAGCGCCTTCAAGCACCGATGCACCAGAGGTCCAATTGCCCGCTTTCGAATACGGAAGAGAT
AAAATCCGAGCAGTCAATCTGGGAGGATGGCTCGTTCTAGAGCCTTGGATAACACCCAGCTTCTTTGAAAGGACG
AACAATACGGACGTCATAGACGAGTATACACTTGGGGCTCTTGTTGACCGTGCTGCTGCATTGGAAATGCTGACA
CAACATTGGGAAACGTGGATAACGGAAGACGACTTTATCGCCATTCGTGCGGCAGGCCTTACCCATGTTCGGATA
CCCCTCGGTTTCTGGTCCGTTCCCCTCACGCAAGACGACGTTCGCACTTCAGTTTCGTCCGACCCATACATTCCA
GGCGCGTGGCCGTACTTCCTTCGTGGCCTCACCTGGGCACGCAAACACGGCGTGCGAGTCATTGTCGATCTGCAC
GGTGCTCCAGGCTCACAGAACGGCTATGACAACTCCGGACAACGGACCTCCGGTCCTCAATGGGCTCTCCAACCG
CACTTTGTGACGCATACCGTCGACGTTGTGCGCTTCATTGCGGCGAATGTTGGCGGGTTAATCGATGTACTAGAA
CTCCTAAACGAACCCGCGGGCTTTAGAGGAGATGATTGGGCCGCAGTGATACGAGAGTTTTGGATAGAAGGGTAT
GATGCTGTTAGGGATGCGGCTGGGGAGGACATTCATGTTATGATTGGGGATGCGTTTCTGGGAGTTGAGTCATGG
ACTGATTTCCTGACACCTCCAAGAGGACATGGAGTTTTGATGGACTTCCACGAATACCAAATATTCAGTCACGGA
GAGCTGGAACGATCACCACAAGAACATATCGACTTTGCGTGCGGATATATCGACCGATTGTCTAGCTTTGCGTCG
TCGAACCTATGGACAGTCGTTGGTGAATGGTCGAACGCGATAACCGATTGCGCTCGCTGGTTAAATGGAAGAGGA
GTTGGTGCTCGGTGGGATGGCACCTGGTACGACACAGACCAATATCACGACACCTGCGAGGGGTACACCGGGAGC
TACCATAACTTCTCGGAAGAGTACATGGCATTTCTTAGAAGGTATTGGGAGGTTCAAGTCGAGATCGGAGAAAGC
GTCCAAGGCTGGGTGTTTTGGACATGGAAGGTGTGTCTATCTTAA
Length 1170

Gene

Sequence id CopciAB_504019.T0
Sequence >CopciAB_504019.T0
ATGGAAGTGCTCCCAGCGCCTTCAAGCACCGATGCACCAGAGGTCCAATTGCCCGCTTTCGAATACGGAAGAGAT
AAAATCCGAGCAGTCAATCTGTATGTCTATGTGGTTGGCTTTTTATGCAGTGATATTAACTTCAATCCAGGGGAG
GATGGCTCGTTCTAGAGGTACTGAAACTCCGCGCCTTTCCCCTCCGGATCACAGCTAAACCACTCGTAGCCTTGG
ATAACACCCAGCTTCTTTGAAAGGACGAACAATACGGACGTCATAGACGAGTATACACTTGGGGCTCTTGTTGAC
CGTGCTGCTGCATTGGAAATGCTGACACAACATTGGGAAACGGTGTGTCTCCCTCTTTCTCTCTGTTTGTCCGCC
TAAGTTCCGCTTTCTAGTGGATAACGGAAGACGACTTTATCGCCATTCGTGCGGCAGGCCTTACCCATGTTCGGT
GAGTCGCCATCATTTCCCCTGTTACCCACCTTGCTCATGGAGTCACTCAGGATACCCCTCGGTTTCTGGTCCGTT
CCCCTCACGCAAGACGACGTTCGCACTTCAGTTTCGTCCGACCCATACATTCCAGGCGCGTGGCCGTACTTCCTT
CGTGGCCTCACCTGGGCACGCAAACACGGCGTGCGAGTCATTGTCGATCTGCACGGTGCTCCAGGCTCACAGAAC
GGCTATGACAACTCCGGACAACGGACCTCCGGTCCTCAATGGGCTCTCCAACCGCACTTTGTGACGCATACCGTC
GACGTTGTGCGCTTCATTGCGGCGAATGTTGGCGGGTTAATCGATGTACTAGAACTCCTAAACGAACCCGCGGGC
TTTAGAGGAGATGATTGGGCCGCAGTGATACGAGAGTTTTGGATAGAAGGGTATGATGCTGTTAGGGATGCGGCT
GGGGAGGACATTCATGTTATGATTGGGGATGCGTTTCTGGGAGTTGAGGTACATCGTCTAGATCCCCTTCCCGGC
TGAACAATCGCTGATGCCCTGTATCCATAGTCATGGACTGATTTCCTGACACCTCCAAGAGGACATGGAGTTTTG
ATGGACTTCGTGCGTACATCGTTCTCTGTTCATTCCCTCCATGCTGACCCTTTCACAGCACGAATACCAAATATT
CAGTCACGGAGAGCTGGAACGATCACCACAAGAACATATCGACTTTGCGTGCGGATATATCGACCGATTGTCTAG
CTTTGCGTCGTCGAACCTATGGACAGTCGTTGGTGAATGGTCGAACGCGATAACCGATTGCGCTCGCTGGTTAAA
TGGAAGAGGAGTTGGTGCTCGGTGGGATGGCACCTGGTACGACACAGACCAATATCACGACACCTGCGAGGGGTA
CACCGGGAGCTACCATAACTTCTCGGAAGAGTACATGGCATTTCTTAGAAGGTAAGTGTCGACATCCCTGTTGCT
ATCTACGCCTGGTTACCACTCGTTCTTAGGTATTGGGAGGTTCAAGTCGAGATCGGAGAAAGCGTCCAAGGCTGG
GTGTTTTGGACATGGAAGGTGTGTCTATCTTAA
Length 1533