CopciAB_509851
Coprinopsis cinerea A43mutB43mut pab1-1 #326

General data

Systematic name CopciAB_509851 Strain Coprinopsis cinerea Okayama 7
Standard name - Synonyms 509851
Uniprot id Functional description Protein kinase subdomain-containing protein PKL ccin3
Location scaffold_8:144093..145153 Strand -
Gene length (nt) 1061 Transcript length (nt) 993
CDS length (nt) 993 Protein length (aa) 330

Reciprocal best hits in model fungi

Strain name Gene / Protein name

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
Flammulina velutipes Flave_chr11AA00376 38.4 1.215E-57 203

Expression

Name Summary Attribution Assay type
Carbon metabolism Transcriptional changes along alternative morphogenetic paths of C. cinerea Xie et al. 2020 RNA-Seq
Sample Mean cpm SD cpm Se of mean
sclerotia 0 0 0
oidia 0 0 0
vegetative_mycelium 0 0 0
primordia 0 0 0
hyphal_knot 0 0 0
young_fruiting_body 0 0 0
Complex carbon sources 1 (long incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control - glucose 0.0069 0.012 0.0069
Wheat bran 0.0098 0.017 0.0098
Horse manure 0.0155 0.0268 0.0155
Oak leaves 0 0 0
Hay 0.0083 0.0143 0.0083
Corn stalk 0.0128 0.0222 0.0128
Pectine 0.0044 0.0076 0.0044
Microcrystalline cellulose 0 0 0
Xylose 0 0 0
Cellobiose 0 0 0
Lignin 0 0 0
Apple peels 0 0 0
Coprinopsis challenged with bacteria Transcriptional response to Bacillus subtilis and Escherichia coli. Kombrink et al. 2018 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control 0.11 0.0486 0.0281
Bsubtilis 0.0827 0.0491 0.0283
Ecoli 0.0849 0.0517 0.0299
Early development 1 Time series expression profiling of basidiospore and oidium germination Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
BS 0h 0.0258 0.0447 0.0258
BS 4h 0.0054 0.0094 0.0054
BS 8h 0 0 0
BS 12h 0 0 0
Oidia 0 h 0 0 0
Oidia 18 h 0.007 0.012 0.007
Sclerotia 0 0 0
Early development 2 Time series expression profiling of mycelial growth, light induction and fruiting body initiation. Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
DM 12h 0 0 0
DM 36h 0 0 0
DM 60h 0 0 0
DM 84h 0.015 0.026 0.015
DM 108h 0 0 0
DM 132h 0 0 0
DM 156hAE 0.013 0.0225 0.013
ELI1hAE 0 0 0
ELI2hAE 0.0021 0.0036 0.0021
LI2hAE 0 0 0
LI6hAE 0 0 0
LI12hAE 0 0 0
LI18hAE 0.1438 0.2293 0.1324
LI 24hAE 0 0 0
DM 156hAM 0 0 0
ELI1hAM 0 0 0
ELI2hAM 0 0 0
LI2hAM 0.0137 0.0238 0.0137
LI6hAM 0.0283 0.0352 0.0203
LI12hAM 0 0 0
LI18hAM 0.0821 0.0769 0.0444
LI 24hAM 0 0 0
LI 24hHK 0 0 0
L/D 6h 0 0 0
L/D 12h 0 0 0
L/D 18h 0.0124 0.0214 0.0124
L/D 24h 0 0 0
Fruiting body development RNA-Seq analysis of fruiting body development Krizsan et al. 2019 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Vegetative mycelium 0 0 0
Hyphal knots 0 0 0
Primordium 1 0 0 0
Primordium 2 0 0 0
Young Fruiting body cap 0 0 0
Younf fruiting body gill 0 0 0
Young fruiting body stipe 0 0 0
Mature fruiting body cap_gill 0 0 0
Mature fruiting body stipe 0.0138 0.012 0.0069
Nitrogen sources (12h incubation) Expression profiling on diverse nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Complete medium - control 0 0 0
NH4NO3 0 0 0
Proline 0 0 0
Tryptophan 0.0114 0.0198 0.0114
Isoleucin 0 0 0
Arginine 0 0 0
Metionine 0 0 0
NaNO3 0.0064 0.0111 0.0064
Plant biomass (12h incubation) Expression profiling on diverse plant biomasses as carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 0 0 0
Citrus peel 0 0 0
Poplar leaves 0 0 0
Typha leaves 0 0 0
Overwintered Salix leaves 0 0 0
Reed flowering 0 0 0
Tigernut 0.0075 0.013 0.0075
Energy cane 0 0 0
Guar gum 0.0053 0.0092 0.0053
Apple peels 0 0 0
Cellobiose 0.0041 0.0071 0.0041
Corn stalk 0.0049 0.0084 0.0049
Horse manure 0 0 0
Lignin 0 0 0
Microcrystalline cellulose 0 0 0
Oak leaves 0 0 0
Pectin esterified 0 0 0
Poplar sawdust 0 0 0
Wheat bran 0 0 0
Chlamydomonas reinhardtii 0 0 0
Vertatryl alcohol 0 0 0
Furfural 0 0 0
Autoclaved mycelium 0 0 0
Simple and complex carbon and nitrogen sources Expression profiling on diverse complex carbon and nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 0.022 0.0381 0.022
Ribose 0.009 0.0156 0.009
Mannose 0.0282 0.0135 0.0096
Fructose 0.0088 0.0152 0.0088
Arabinose 0 0 0
Xylose 0 0 0
Galacturonic acid 0.0148 0.0256 0.0148
Rhamnogalacturonan 0.0146 0.0253 0.0146
Pectin esterified 0 0 0
Polygalacturonic acid 0.0145 0.0142 0.0082
Sodium acetate 0 0 0
No nitrogen 0 0 0
BSA 0.0062 0.0108 0.0062
Glutamine 0 0 0
No phosphate 0 0 0
No carbon 0 0 0
No sulphur 0.0053 0.0093 0.0053
Simple and complex carbon sources (12h incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 0 0 0
Amylose 0 0 0
Fucose 0 0 0
Galactose 0 0 0
Lactose 0 0 0
Maltose 0 0 0
Mannitol 0 0 0
Rhamnose 0 0 0
Sorbitol 0 0 0
Trehalose 0 0 0
Glycerol 0 0 0
Glucuronic acid 0.0045 0.0078 0.0045
Arabinan 0 0 0
Galactan 0.0189 0.0328 0.0189
Galactomannan 0 0 0
Glucan 0.0127 0.011 0.0064
Xylan 0.0204 0.0353 0.0204
Xyloglucan 0.0053 0.0092 0.0053
Arabinogalactan 0.0052 0.009 0.0052
Pectin 0 0 0
Rhamnogalacturonan 0 0 0
Polygalacturonic acid 0 0 0
Mannan 0 0 0
Amylopectin 0 0 0
Inulin 0 0 0
BSA 0.0089 0.0154 0.0089
Starvation induced by water agar transfer Expression profiling on starvation induced by transfer to water agar Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Control 0 0 0
2h WAT 0.0434 0.0517 0.0298
4h WAT 0 0 0
8h WAT 0.0142 0.0246 0.0142
16h WAT 0 0 0
24h WAT 0 0 0
WAT hyphal knot -30h 0 0 0
WAT hyphal knot -22h 0 0 0
WAT hyphal knot -15h 0.0282 0.0318 0.0183
WAT hyphal knot -7.5h 0.0146 0.0253 0.0146
WAT hyphal knot 0.0158 0.0274 0.0158
WAT hyphal knot +7.5h 0.0178 0.0308 0.0178
Straw time series Time series expression profiling on straw as a carbon source Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 0 0 0
Straw 3h 0 0 0
Straw 6h 0 0 0
Straw 12h 0 0 0
Straw 24h 0 0 0
Stress conditions 1 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 0 0 0
Frost (-20C, 30min) 0 0 0
Heat shock (47C, 2h) 0.0187 0.0325 0.0187
High CO2 0 0 0
Drought (4% agar, 12h) 0.0274 0.0474 0.0274
Oxidative (1mM H2O2, 3h) 0.0014 0.0025 0.0014
Acidic (pH4, 3h) 0.0411 0.0394 0.0228
Alkaline (pH9, 3h) 0.0082 0.0142 0.0082
Osmotic (sorbitol 2h) 0.0081 0.014 0.0081
CongoRed (3h) 0 0 0
Cobalt chloride control 0 0 0
Cobalt chloride 2mM 0 0 0
Stress conditions 2 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 0.1099 0.1903 0.1099
Cold stimulation 0.1071 0.1598 0.0923
Scratched surface 0.0482 0.012 0.0069
Ca2+, 200mM, 24h 0 0 0
Cu2+, 2mM, 6h 0.0058 0.01 0.0058
Voriconazole 0 0 0
Trichoderma interaction, early 0.0304 0.0526 0.0304
Trichoderma interaction 60h 0.1944 0.3367 0.1944
Cobalt chloride 2mM repeat 0.0147 0.0254 0.0147
Hypoxia 0.1113 0.1195 0.069
Hypoxia control 0.0151 0.0261 0.0151
Protoplastation control 0 0 0
Protoplastation 3.5h 0.032 0.0452 0.032
Protoplastation 1.5h 0.0244 0.0345 0.0244

General data

Systematic name -
Protein id CopciAB_509851.T0
Description Protein kinase subdomain-containing protein PKL ccin3

Annotation summary

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
No records

SignalP

Prediction Start End Score
No records

Transmembrane domains

Domain n Start End Length
No records

InterPro

Accession Description
No records

GO

Go id Term Ontology
No records

KEGG

KEGG Orthology
No records

EggNOG

COG category Description
G Protein kinase subdomain-containing protein PKL ccin3

CAZy

Class Family Subfamily
No records

Transcription factor

Group
No records

Conservation of CopciAB_509851 across fungi.

Arrow shows the origin of gene family containing CopciAB_509851.

Protein

Sequence id CopciAB_509851.T0
Sequence >CopciAB_509851.T0
MFSTILIHNCGSIDGEPTTITLKASPSFPAALWYQQDWERPVPATWAAKDVSGFDGTLEIKLVERISEGRIGITY
VAQVISATQSGSDVRSTIPSTLCLKFAKPEFSRSLAREAWFYEQLESLQGISVPLSFGFFASTASEQPKFPGVDF
EFEPWTDRQVLFEDTDSTPDNIDEYPSPDWLTDDVPEYYAERTFEHTHHELDSPWYQWSRNLDDNPTISVLVLEL
LGEPCTGRKTAADKHAIHEVMDDLAAVGVVHDNLTPWNTLAFKPSPHSEPQLCPRHGVVHPWRIIDFDRSKMADP
TNLSDFGCRNVLDTEYVLDIAVSFNFWAWR
Length 330

Coding

Sequence id CopciAB_509851.T0
Sequence >CopciAB_509851.T0
ATGTTCTCTACAATACTGATTCACAACTGCGGCTCCATCGATGGCGAACCAACAACTATTACACTCAAAGCCTCA
CCCTCTTTCCCCGCAGCCCTCTGGTATCAGCAAGACTGGGAAAGACCAGTTCCAGCCACATGGGCGGCCAAGGAT
GTTTCTGGCTTCGACGGGACGCTCGAAATCAAGCTTGTTGAACGCATCTCGGAGGGACGAATTGGCATAACCTAC
GTGGCACAAGTTATTTCTGCCACACAAAGCGGCAGTGACGTCCGTTCAACCATCCCTTCCACCTTATGCCTCAAA
TTCGCCAAGCCAGAGTTCAGTCGGAGCCTAGCTAGAGAAGCTTGGTTCTACGAGCAGCTCGAATCGTTGCAGGGC
ATCTCCGTACCCCTTTCATTCGGATTCTTCGCGTCCACCGCCTCGGAACAACCCAAATTCCCCGGTGTCGATTTC
GAGTTTGAGCCCTGGACTGACCGACAGGTATTATTCGAAGATACGGACTCGACCCCGGACAACATCGACGAGTAT
CCTTCGCCAGACTGGCTGACTGACGACGTGCCCGAATATTACGCTGAACGGACCTTTGAGCACACGCACCACGAA
CTAGACTCGCCCTGGTACCAATGGAGTCGGAACCTCGACGACAATCCCACCATCTCCGTCCTCGTCCTCGAGCTG
CTGGGCGAACCATGTACCGGGCGGAAAACTGCTGCAGACAAACATGCAATTCATGAAGTAATGGACGACTTGGCT
GCAGTCGGCGTGGTGCATGATAATCTTACACCTTGGAACACACTGGCATTCAAGCCATCTCCGCACAGTGAGCCA
CAGCTATGCCCTCGACACGGAGTTGTCCATCCCTGGCGGATCATCGACTTCGACCGATCCAAGATGGCAGATCCC
ACAAACCTCAGCGATTTTGGCTGCCGTAACGTTTTGGATACTGAGTACGTGTTGGATATTGCAGTTTCTTTCAAC
TTTTGGGCATGGCGATAG
Length 993

Transcript

Sequence id CopciAB_509851.T0
Sequence >CopciAB_509851.T0
ATGTTCTCTACAATACTGATTCACAACTGCGGCTCCATCGATGGCGAACCAACAACTATTACACTCAAAGCCTCA
CCCTCTTTCCCCGCAGCCCTCTGGTATCAGCAAGACTGGGAAAGACCAGTTCCAGCCACATGGGCGGCCAAGGAT
GTTTCTGGCTTCGACGGGACGCTCGAAATCAAGCTTGTTGAACGCATCTCGGAGGGACGAATTGGCATAACCTAC
GTGGCACAAGTTATTTCTGCCACACAAAGCGGCAGTGACGTCCGTTCAACCATCCCTTCCACCTTATGCCTCAAA
TTCGCCAAGCCAGAGTTCAGTCGGAGCCTAGCTAGAGAAGCTTGGTTCTACGAGCAGCTCGAATCGTTGCAGGGC
ATCTCCGTACCCCTTTCATTCGGATTCTTCGCGTCCACCGCCTCGGAACAACCCAAATTCCCCGGTGTCGATTTC
GAGTTTGAGCCCTGGACTGACCGACAGGTATTATTCGAAGATACGGACTCGACCCCGGACAACATCGACGAGTAT
CCTTCGCCAGACTGGCTGACTGACGACGTGCCCGAATATTACGCTGAACGGACCTTTGAGCACACGCACCACGAA
CTAGACTCGCCCTGGTACCAATGGAGTCGGAACCTCGACGACAATCCCACCATCTCCGTCCTCGTCCTCGAGCTG
CTGGGCGAACCATGTACCGGGCGGAAAACTGCTGCAGACAAACATGCAATTCATGAAGTAATGGACGACTTGGCT
GCAGTCGGCGTGGTGCATGATAATCTTACACCTTGGAACACACTGGCATTCAAGCCATCTCCGCACAGTGAGCCA
CAGCTATGCCCTCGACACGGAGTTGTCCATCCCTGGCGGATCATCGACTTCGACCGATCCAAGATGGCAGATCCC
ACAAACCTCAGCGATTTTGGCTGCCGTAACGTTTTGGATACTGAGTACGTGTTGGATATTGCAGTTTCTTTCAAC
TTTTGGGCATGGCGATAG
Length 993

Gene

Sequence id CopciAB_509851.T0
Sequence >CopciAB_509851.T0
ATGTTCTCTACAATACTGATTCACAACTGCGGCTCCATCGATGGCGAACCAACAACTATTACACTCAAAGCCTCA
CCCTCTTTCCCCGCAGCCCTCTGGTATCAGCAAGACTGGGAAAGACCAGTTCCAGCCACATGGGCGGCCAAGGAT
GTTTCTGGCTTCGACGGGACGCTCGAAATCAAGCTTGTTGAACGCATCTCGGAGGGACGAATTGGCATAACCTAC
GTGGCACAAGTTATTTCTGCCACACAAAGCGGCAGTGACGTCCGTTCAACCATCCCTTCCACCTTATGCCTCAAA
TTCGCCAAGCCAGAGTTCAGTCGGAGCCTAGCTAGAGAAGCTTGGTTCTACGAGCAGCTCGAATCGTTGCAGGGC
ATCTCCGTACCCCTTTCATTCGGATTCTTCGCGTCCACCGCCTCGGAACAACCCAAATTCCCCGGTGTCGATTTC
GAGTTTGAGCCCTGGACTGACCGACAGGTATTATTCGAAGATACGGACTCGACCCCGGACAACATCGACGAGTAT
CCTTCGCCAGACTGGCTGACTGACGACGTGCCCGAATATTACGCTGAACGGACCTTTGAGCACACGCACCACGAA
CTAGACTCGCCCTGGTACCAATGGAGTCGGAACCTCGACGACAATCCCACCATCTCCGTCCTCGTCCTCGAGCTG
CTGGGCGAACCATGTACCGGGCGGAAAACTGCTGCAGACAAGTGAGTGCTCTTCGTTCACATGTGTTCCCAGTAA
TATATCTGGCTCAACATTAAGACTTGGACTCCAGACATGCAATTCATGAAGTAATGGACGACTTGGCTGCAGTCG
GCGTGGTGCATGATAATCTTACACCTTGGAACACACTGGCATTCAAGCCATCTCCGCACAGTGAGCCACAGCTAT
GCCCTCGACACGGAGTTGTCCATCCCTGGCGGATCATCGACTTCGACCGATCCAAGATGGCAGATCCCACAAACC
TCAGCGATTTTGGCTGCCGTAACGTTTTGGATACTGAGTACGTGTTGGATATTGCAGTTTCTTTCAACTTTTGGG
CATGGCGATAG
Length 1061