CopciAB_510262
Coprinopsis cinerea A43mutB43mut pab1-1 #326

General data

Systematic name CopciAB_510262 Strain Coprinopsis cinerea Okayama 7
Standard name - Synonyms 510262
Uniprot id Functional description
Location scaffold_7:2385930..2387775 Strand +
Gene length (nt) 1846 Transcript length (nt) 1538
CDS length (nt) 1083 Protein length (aa) 360

Reciprocal best hits in model fungi

Strain name Gene / Protein name

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
0

Expression

Name Summary Attribution Assay type
Carbon metabolism Transcriptional changes along alternative morphogenetic paths of C. cinerea Xie et al. 2020 RNA-Seq
Sample Mean cpm SD cpm Se of mean
sclerotia 23.8179 4.4152 2.5491
oidia 13.9285 1.3597 0.785
vegetative_mycelium 15.0138 2.2348 1.2902
primordia 8.5033 1.0502 0.6064
hyphal_knot 19.1622 1.4601 0.843
young_fruiting_body 1.326 0.0936 0.0541
Complex carbon sources 1 (long incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control - glucose 11.8905 5.3444 3.0856
Wheat bran 14.315 1.9021 1.0982
Horse manure 8.9022 3.4054 1.9661
Oak leaves 9.1797 2.2381 1.2922
Hay 13.8441 0.6754 0.3899
Corn stalk 12.1845 3.5078 2.0252
Pectine 15.1821 0.945 0.5456
Microcrystalline cellulose 14.6485 0.5424 0.3132
Xylose 6.3497 1.5789 0.9116
Cellobiose 7.7206 1.4054 0.8114
Lignin 6.0535 2.1845 1.2612
Apple peels 16.5995 0.9743 0.5625
Coprinopsis challenged with bacteria Transcriptional response to Bacillus subtilis and Escherichia coli. Kombrink et al. 2018 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control 11.0558 1.1472 0.6623
Bsubtilis 12.2672 0.7 0.4042
Ecoli 11.6481 0.9118 0.5264
Early development 1 Time series expression profiling of basidiospore and oidium germination Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
BS 0h 0.0258 0.0447 0.0258
BS 4h 0.1712 0.0828 0.0478
BS 8h 0.3483 0.0563 0.0325
BS 12h 0.4591 0.0953 0.055
Oidia 0 h 1.7578 0.918 0.53
Oidia 18 h 0.474 0.311 0.1796
Sclerotia 3.3299 0.8875 0.5124
Early development 2 Time series expression profiling of mycelial growth, light induction and fruiting body initiation. Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
DM 12h 1.1643 0.4381 0.253
DM 36h 1.0849 0.5341 0.3084
DM 60h 0.9668 0.1976 0.1141
DM 84h 1.3425 0.2515 0.1452
DM 108h 1.5575 0.5052 0.2917
DM 132h 1.6405 1.2469 0.7199
DM 156hAE 1.2871 0.4935 0.2849
ELI1hAE 2.2329 1.2735 0.7353
ELI2hAE 2.4176 1.0454 0.6036
LI2hAE 2.0833 0.1172 0.0677
LI6hAE 1.2292 0.5429 0.3135
LI12hAE 1.8083 0.5624 0.3247
LI18hAE 3.474 1.1897 0.6869
LI 24hAE 1.6689 1.0772 0.6219
DM 156hAM 1.7032 0.3894 0.2248
ELI1hAM 1.7667 0.2761 0.1594
ELI2hAM 1.412 0.134 0.0774
LI2hAM 1.7505 1.3336 0.7699
LI6hAM 1.4753 0.3402 0.1964
LI12hAM 2.6522 1.0556 0.6094
LI18hAM 3.171 1.2871 0.7431
LI 24hAM 1.6787 0.4669 0.2695
LI 24hHK 1.9017 0.9997 0.5772
L/D 6h 1.5743 0.5587 0.3225
L/D 12h 1.1069 0.1923 0.111
L/D 18h 1.6019 0.649 0.3747
L/D 24h 1.2538 0.5383 0.3108
Fruiting body development RNA-Seq analysis of fruiting body development Krizsan et al. 2019 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Vegetative mycelium 12.7615 2.2911 1.3228
Hyphal knots 8.2539 2.3196 1.3392
Primordium 1 6.6816 0.502 0.2898
Primordium 2 7.9413 0.7933 0.458
Young Fruiting body cap 2.6616 1.4261 0.8233
Younf fruiting body gill 4.7524 3.0447 1.7579
Young fruiting body stipe 3.4512 0.2979 0.172
Mature fruiting body cap_gill 3.0595 0.9861 0.5693
Mature fruiting body stipe 11.8416 1.3057 0.7539
Nitrogen sources (12h incubation) Expression profiling on diverse nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Complete medium - control 9.8392 0.7496 0.4328
NH4NO3 12.9421 1.1378 0.6569
Proline 11.0914 1.5558 0.8982
Tryptophan 11.0582 1.3001 0.7506
Isoleucin 11.9454 1.395 0.8054
Arginine 14.0479 1.0894 0.629
Metionine 12.5234 3.5865 2.0706
NaNO3 9.8321 2.1319 1.2308
Plant biomass (12h incubation) Expression profiling on diverse plant biomasses as carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 9.8392 0.7496 0.4328
Citrus peel 10.4451 1.5692 0.906
Poplar leaves 6.9804 2.0703 1.1953
Typha leaves 6.278 1.0235 0.5909
Overwintered Salix leaves 7.4125 0.916 0.5289
Reed flowering 7.6305 2.2521 1.3002
Tigernut 7.7431 0.4586 0.2648
Energy cane 10.4317 0.5151 0.2974
Guar gum 10.9792 0.8078 0.4664
Apple peels 7.0516 1.0918 0.6303
Cellobiose 9.5485 1.7145 0.9899
Corn stalk 6.6109 1.4384 0.8305
Horse manure 6.3266 1.4845 0.8571
Lignin 7.3839 3.4685 2.0025
Microcrystalline cellulose 6.9225 2.7476 1.5863
Oak leaves 6.2427 0.4133 0.2386
Pectin esterified 7.9606 1.8694 1.0793
Poplar sawdust 8.5227 1.1788 0.6806
Wheat bran 7.6617 2.4632 1.4221
Chlamydomonas reinhardtii 10.1497 1.4041 0.8106
Vertatryl alcohol 12.0462 1.1418 0.6592
Furfural 11.2237 4.2869 2.475
Autoclaved mycelium 9.273 0.579 0.3343
Simple and complex carbon and nitrogen sources Expression profiling on diverse complex carbon and nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 9.0166 0.4358 0.2516
Ribose 9.4977 1.6359 0.9445
Mannose 7.658 0.8257 0.5838
Fructose 9.4379 0.4034 0.2329
Arabinose 9.5684 2.7809 1.6055
Xylose 8.5115 2.077 1.1991
Galacturonic acid 11.1572 1.5815 0.9131
Rhamnogalacturonan 9.4632 1.0151 0.5861
Pectin esterified 10.5816 1.238 0.7148
Polygalacturonic acid 11.8427 1.7475 1.0089
Sodium acetate 7.2198 1.3694 0.7906
No nitrogen 11.6737 1.593 0.9197
BSA 9.6211 1.84 1.0623
Glutamine 10.0055 2.4895 1.4373
No phosphate 7.8851 0.328 0.1894
No carbon 10.1471 0.0162 0.0114
No sulphur 9.2199 1.4208 0.8203
Simple and complex carbon sources (12h incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 9.8392 0.7496 0.4328
Amylose 13.4901 0.9799 0.5657
Fucose 12.5463 0.6265 0.3617
Galactose 15.236 2.0866 1.2047
Lactose 12.6832 0.128 0.0739
Maltose 12.7003 3.2208 1.8596
Mannitol 13.9948 0.6588 0.3803
Rhamnose 12.2262 2.7336 1.5783
Sorbitol 13.3212 3.2183 1.8581
Trehalose 10.6621 2.7317 1.5772
Glycerol 12.1971 5.0562 2.9192
Glucuronic acid 14.7794 2.5273 1.4591
Arabinan 10.5828 2.5973 1.4995
Galactan 8.225 0.613 0.3539
Galactomannan 10.1342 1.7306 0.9992
Glucan 9.2217 1.7079 0.9861
Xylan 10.8478 1.4284 0.8247
Xyloglucan 9.2869 0.5688 0.3284
Arabinogalactan 13.6964 2.2458 1.2966
Pectin 14.3149 3.6722 2.1201
Rhamnogalacturonan 7.8134 2.0238 1.1684
Polygalacturonic acid 14.6986 2.6796 1.5471
Mannan 13.3532 0.1398 0.0807
Amylopectin 12.578 3.655 2.1102
Inulin 12.8688 2.3563 1.3604
BSA 6.5969 1.5212 0.8783
Starvation induced by water agar transfer Expression profiling on starvation induced by transfer to water agar Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Control 0.9668 0.1976 0.1141
2h WAT 1.753 0.0506 0.0292
4h WAT 2.0447 1.1468 0.6621
8h WAT 2.34 0.6463 0.3731
16h WAT 2.5057 0.5315 0.3069
24h WAT 1.4526 0.1399 0.0808
WAT hyphal knot -30h 0.9578 0.4021 0.2322
WAT hyphal knot -22h 1.5003 0.3561 0.2056
WAT hyphal knot -15h 2.5949 1.0539 0.6085
WAT hyphal knot -7.5h 2.4496 1.3675 0.7895
WAT hyphal knot 2.3635 1.3156 0.7595
WAT hyphal knot +7.5h 1.2977 1.1162 0.6444
Straw time series Time series expression profiling on straw as a carbon source Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 6.1629 2.9748 1.7175
Straw 3h 9.7504 4.1248 2.3815
Straw 6h 6.0199 2.5638 1.4802
Straw 12h 5.3894 0.4269 0.2465
Straw 24h 5.4387 1.3578 0.7839
Stress conditions 1 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 1.9835 0.5991 0.3459
Frost (-20C, 30min) 2.2001 0.6057 0.3497
Heat shock (47C, 2h) 0.9503 0.4128 0.2383
High CO2 1.1317 0.541 0.3123
Drought (4% agar, 12h) 2.8779 0.6328 0.3653
Oxidative (1mM H2O2, 3h) 1.2168 0.8506 0.4911
Acidic (pH4, 3h) 1.7749 0.448 0.2587
Alkaline (pH9, 3h) 1.6604 0.7323 0.4228
Osmotic (sorbitol 2h) 3.3499 0.3679 0.2124
CongoRed (3h) 1.7759 0.437 0.2523
Cobalt chloride control 2.9387 0.5118 0.2955
Cobalt chloride 2mM 2.9348 1.4177 0.8185
Stress conditions 2 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 3.4564 4.6187 2.6666
Cold stimulation 3.7801 2.3267 1.3433
Scratched surface 1.6436 0.3079 0.1778
Ca2+, 200mM, 24h 3.3214 1.6597 0.9583
Cu2+, 2mM, 6h 1.6831 0.292 0.1686
Voriconazole 2.2006 0.9052 0.5226
Trichoderma interaction, early 1.7078 0.3478 0.2008
Trichoderma interaction 60h 2.8701 2.6024 1.5025
Cobalt chloride 2mM repeat 1.0697 0.1405 0.0811
Hypoxia 2.9275 2.0053 1.1577
Hypoxia control 3.2874 1.2879 0.7436
Protoplastation control 3.2264 0.816 0.577
Protoplastation 3.5h 3.0871 0.2535 0.1792
Protoplastation 1.5h 3.8361 1.6589 1.173

General data

Systematic name -
Protein id CopciAB_510262.T0
Description

Annotation summary

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
No records

SignalP

Prediction Start End Score
No records

Transmembrane domains

Domain n Start End Length
No records

InterPro

Accession Description
No records

GO

Go id Term Ontology
No records

KEGG

KEGG Orthology
No records

EggNOG

COG category Description
No records

CAZy

Class Family Subfamily
No records

Transcription factor

Group
No records

Conservation of CopciAB_510262 across fungi.

Arrow shows the origin of gene family containing CopciAB_510262.

Protein

Sequence id CopciAB_510262.T0
Sequence >CopciAB_510262.T0
MAAAPIQLSSVLEYSLHIINGSVGCRTTGECNGSTPNHGLSESLSLTGKHDSYALTKSTGSVAQVWPYVEACLDG
KVFDPSSLALEDLSTHARRGAFKLKGKPHQLPVVQADSGAEDWVQTLCLEYLKHVMMLAQAVLASQTPAPEHELI
FDTFQGMVKTVNQHPTSDSDFQAPDVIVKVKLQPGANDQPQGAQVEIFRAEIKAITTECLRSLLEWVVAEGVRFD
PCNGLSRKGPIASIPADQHETLSRMVAQGKQYSEQTTSPGTCLLTNLYSYGYLFTRADRGVAPVSTNLLEQVASR
RDPDKPFEPDIHDRGMESHQRIFETLLAVFLHGLCRARPELFLDPDLRSRLDQIAPELQG
Length 360

Coding

Sequence id CopciAB_510262.T0
Sequence >CopciAB_510262.T0
ATGGCCGCCGCCCCAATCCAACTCTCATCAGTTCTCGAATACTCTCTCCACATCATCAATGGTTCCGTTGGCTGC
AGAACCACGGGCGAGTGCAATGGGTCCACACCTAATCACGGCTTATCCGAGTCCTTGAGCTTGACCGGCAAGCAC
GACTCGTATGCTCTAACCAAATCTACTGGTTCTGTTGCACAAGTGTGGCCATACGTCGAGGCGTGTCTGGACGGG
AAGGTCTTCGACCCATCCTCGTTAGCGCTGGAAGATCTGTCGACGCACGCCCGACGTGGCGCGTTCAAGCTGAAA
GGCAAACCGCACCAGCTTCCCGTTGTTCAAGCAGATTCTGGTGCAGAGGATTGGGTCCAGACGCTTTGTCTGGAG
TACCTCAAGCATGTCATGATGCTCGCGCAGGCTGTCCTCGCTTCGCAGACACCAGCGCCAGAGCACGAGCTCATC
TTCGACACTTTTCAAGGGATGGTCAAAACGGTTAACCAGCACCCTACATCTGACAGTGACTTCCAGGCTCCAGAT
GTCATAGTAAAAGTCAAGCTTCAACCTGGAGCCAATGACCAGCCGCAAGGGGCCCAGGTTGAGATTTTCAGAGCA
GAGATAAAGGCCATCACCACAGAGTGTCTCCGCAGCCTATTAGAATGGGTTGTCGCTGAGGGCGTACGTTTCGAT
CCTTGTAATGGACTGAGCCGTAAAGGTCCCATTGCCAGCATCCCAGCCGACCAACATGAAACACTTTCGCGTATG
GTAGCTCAGGGAAAGCAATACAGCGAGCAAACCACGTCTCCCGGGACATGCCTACTAACAAACCTCTATTCATAC
GGATACCTGTTCACCAGAGCGGATCGTGGGGTAGCCCCAGTGTCCACCAACTTGCTCGAACAAGTGGCTTCACGA
CGAGACCCTGACAAACCCTTTGAACCCGACATCCACGACCGCGGCATGGAATCTCACCAAAGGATATTCGAAACT
CTCTTGGCCGTGTTTCTCCACGGTCTCTGCAGAGCAAGACCAGAGCTATTCCTCGATCCTGATCTTCGCAGTCGC
CTGGATCAGATAGCCCCAGAGCTGCAGGGCTAA
Length 1083

Transcript

Sequence id CopciAB_510262.T0
Sequence >CopciAB_510262.T0
GCGTTAATCCCACAACCGCCCTCAACAGCCTTCTTCAACAAGGCAGGGGCGTTGGCAATCTAGGCCCAATACCTT
CTGTCCACTTGTGCATTGAGTGAGCGTCAGTCACCTGCTCGCAAGGCCGGGTACAGAGGTTTACCTGGAATGCAG
ATCTAGTATCTGGATACCGACAATGGCCGCCGCCCCAATCCAACTCTCATCAGTTCTCGAATACTCTCTCCACAT
CATCAATGGTTCCGTTGGCTGCAGAACCACGGGCGAGTGCAATGGGTCCACACCTAATCACGGCTTATCCGAGTC
CTTGAGCTTGACCGGCAAGCACGACTCGTATGCTCTAACCAAATCTACTGGTTCTGTTGCACAAGTGTGGCCATA
CGTCGAGGCGTGTCTGGACGGGAAGGTCTTCGACCCATCCTCGTTAGCGCTGGAAGATCTGTCGACGCACGCCCG
ACGTGGCGCGTTCAAGCTGAAAGGCAAACCGCACCAGCTTCCCGTTGTTCAAGCAGATTCTGGTGCAGAGGATTG
GGTCCAGACGCTTTGTCTGGAGTACCTCAAGCATGTCATGATGCTCGCGCAGGCTGTCCTCGCTTCGCAGACACC
AGCGCCAGAGCACGAGCTCATCTTCGACACTTTTCAAGGGATGGTCAAAACGGTTAACCAGCACCCTACATCTGA
CAGTGACTTCCAGGCTCCAGATGTCATAGTAAAAGTCAAGCTTCAACCTGGAGCCAATGACCAGCCGCAAGGGGC
CCAGGTTGAGATTTTCAGAGCAGAGATAAAGGCCATCACCACAGAGTGTCTCCGCAGCCTATTAGAATGGGTTGT
CGCTGAGGGCGTACGTTTCGATCCTTGTAATGGACTGAGCCGTAAAGGTCCCATTGCCAGCATCCCAGCCGACCA
ACATGAAACACTTTCGCGTATGGTAGCTCAGGGAAAGCAATACAGCGAGCAAACCACGTCTCCCGGGACATGCCT
ACTAACAAACCTCTATTCATACGGATACCTGTTCACCAGAGCGGATCGTGGGGTAGCCCCAGTGTCCACCAACTT
GCTCGAACAAGTGGCTTCACGACGAGACCCTGACAAACCCTTTGAACCCGACATCCACGACCGCGGCATGGAATC
TCACCAAAGGATATTCGAAACTCTCTTGGCCGTGTTTCTCCACGGTCTCTGCAGAGCAAGACCAGAGCTATTCCT
CGATCCTGATCTTCGCAGTCGCCTGGATCAGATAGCCCCAGAGCTGCAGGGCTAAGTACATGGCTCTTCAACTTC
TTCGAAAAGCTGGGCTTTTCTCCTCAGCAATACGACAGGTGGCACATTACTCTGTTGTAGAGAACCAGGGTCGAC
GCTACGGCACATCAATCCCGTCTGTATTCTTCGACAAAATATTTTACGGGGCACAGGGGCAGGTGGCAGTTTCAA
GGAAACTCGGAATAGCAGTCAAGGAAGGTGGGAAGGCGATCACACGCGAGATTGAAATGTACAAGAAGTTGCGAG
GTGTCGAAGGTGTTCCGGAATATCTTTGGACACTGTCA
Length 1538

Gene

Sequence id CopciAB_510262.T0
Sequence >CopciAB_510262.T0
GCGTTAATCCCACAACCGCCCTCAACAGCCTTCTTCAACAAGGCAGGGGCGTTGGCAATCTAGGCCCAATACCTT
CTGTCCACTTGTGCATTGAGTGAGCGTCAGTCACCTGCTCGCAAGGCCGGGTACAGAGGTTTACCTGGAATGCAG
ATCTAGTATCTGGATACCGACAATGGCCGCCGGTGAGTTAAAAACAGCACGTCGTTACAGGTCTTCGCTTCTCTA
AAGTCGTGAACTGTACCTCTCCCAGCCCCAATCCAACTCTCATCAGTTCTCGAATACTCTCTCCACATCATCAAT
GGTTCCGTTGGCTGCAGAACCACGGGCGAGTGCAATGGGTCCACACCTAATCACGGCTTATCCGAGTCCTTGAGC
TTGACCGGCAAGCACGACTCGTATGCTCTAACCAAATCTACTGGTTCTGTTGCACAAGTGTGGCCATACGTCGAG
GCGTGTCTGGACGGGAAGGTCTTCGACCCATCCTCGTTAGCGCTGGAAGATCTGTCGACGCACGCCCGACGTGGC
GCGTTCAAGCTGAAAGGCAAACCGCACCAGCTTCCCGTTGTTCAAGCAGATTCTGGTGCAGAGGATTGGGTCCAG
ACGCTTTGTCTGGAGTACCTCAAGCATGTCATGATGCTCGCGCAGGCTGTCCTCGCTTCGCAGACACCAGCGCCA
GAGCACGAGCTCATCTTCGACACTTTTCAAGGGATGGTCAAAACGGTTAACCAGCACCCTACATCTGACAGTGAC
TTCCAGGCTCCAGATGTCATAGTAAAAGTCAAGGTAAGTGACGGAATATGTAAATCTCAAAACCATGATCTTACA
TCCGACTGAAGCTTCAACCTGGAGCCAATGACCAGCCGCAAGGGGCCCAGGTTGAGATTTTCAGAGCAGAGATAA
AGGCCATCACCACAGAGTGTCTCCGCAGCCTATTAGAATGGGTTGTCGCTGAGGGCGTACGTTTCGATCCTTGTA
ATGGACTGAGCCGTAAAGGTCCCATTGCCAGCATCCCAGCCGACCAACATGAAACACTTTCGCGTATGGTAGCTC
AGGTACGCCCCGCCTACTCGAGCCCCATCCTCAACTGACTTCTCTCCTCAAGGGAAAGCAATACAGCGAGCAAAC
CACGTCTCCCGGGACATGCCTACTAACAAACCTCTATTCATACGGATACCTGTTCACCAGAGCGGATCGTGGGGT
AGCCCCAGTGTCCACCAACTTGCTCGAACAAGTGGCTTCACGACGAGACCCTGACAAACCCTTTGAACCCGACAT
CCACGACCGCGGCATGGAATCTCACCAAAGGATATTCGAAACTCTCTTGGCCGTGTTTCTCCACGGTCTCTGCAG
AGCAAGACCAGAGCTATTCCTCGATCCTGATCTTCGCAGTCGCCTGGATCAGATAGCCCCAGAGCTGCAGGTACG
TTCCAAGGGTGCCGCTACAGCCCCTTGGAAGTCGTTTGTGGCCGCCTACCACAATTTCACTTCTCATGTTGCCGT
CAGGGCTAAGTACATGGCTCTTCAACTTCTTCGAAAAGCTGGGCTTTTCTCCTCAGCAATACGACAGGTGGCACA
TTACTCTGTTGTAGAGAACCAGGGTCGACGGTATGTCTAATCGTCGTCACCAACAATCGAGTATCCACTAACCCA
GAACTACAGCTACGGCACATCAATCCCGTCTGTATTCTTCGACAAAATATTTTACGGGGCACAGGGGCAGGTGGC
AGTTTCAAGGAAACTCGGAATAGCAGTCAAGGAAGGTGGGAAGGCGATCACACGCGAGATTGAAATGTACAAGAA
GTTGCGAGGTGTCGAAGGTGTTCCGGAATATCTTTGGACACTGTCA
Length 1846