CopciAB_541725
Coprinopsis cinerea A43mutB43mut pab1-1 #326

General data

Systematic name CopciAB_541725 Strain Coprinopsis cinerea Okayama 7
Standard name - Synonyms 541725
Uniprot id Functional description Protein kinase domain
Location scaffold_5:3153872..3155370 Strand -
Gene length (nt) 1499 Transcript length (nt) 1289
CDS length (nt) 1164 Protein length (aa) 387

Reciprocal best hits in model fungi

Strain name Gene / Protein name

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
Schizophyllum commune H4-8 Schco3_2608501 41.4 5.711E-90 300
Hypsizygus marmoreus strain 51987-8 Hypma_RDB25453 43.6 6.376E-89 297
Pleurotus eryngii ATCC 90797 Pleery1_1500844 39.5 5.461E-89 297
Pleurotus ostreatus PC15 PleosPC15_2_1078212 41 1.025E-88 296
Pleurotus ostreatus PC9 PleosPC9_1_127185 39.6 1.08E-87 293
Grifola frondosa Grifr_OBZ70648 40.4 2.803E-86 289
Ganoderma sp. 10597 SS1 v1.0 Gansp1_44351 39.7 4.603E-79 268
Lentinula edodes W1-26 v1.0 Lentinedodes1_6266 38.1 1.742E-71 246
Lentinula edodes B17 Lened_B_1_1_11676 36.5 8.592E-67 232
Agaricus bisporus var. burnettii JB137-S8 Agabi_varbur_1_113058 32.2 1.498E-9 59
Agaricus bisporus var bisporus (H97) Agabi_varbisH97_2_188717 31.1 5.999E-9 57

Expression

Name Summary Attribution Assay type
Carbon metabolism Transcriptional changes along alternative morphogenetic paths of C. cinerea Xie et al. 2020 RNA-Seq
Sample Mean cpm SD cpm Se of mean
sclerotia 71.2475 14.3447 8.2819
oidia 142.5602 13.0926 7.559
vegetative_mycelium 175.6055 22.4041 12.935
primordia 18.9252 1.7431 1.0064
hyphal_knot 99.2565 7.1165 4.1087
young_fruiting_body 13.0118 3.7616 2.1718
Complex carbon sources 1 (long incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control - glucose 131.0377 7.293 4.2106
Wheat bran 323.3142 64.2959 37.1213
Horse manure 213.4661 32.4221 18.7189
Oak leaves 199.0434 70.7995 40.8761
Hay 254.694 13.3503 7.7078
Corn stalk 218.0024 39.1756 22.6181
Pectine 180.685 2.5615 1.4789
Microcrystalline cellulose 171.5322 7.0064 4.0452
Xylose 173.0287 0.8595 0.4963
Cellobiose 162.9758 10.3717 5.9881
Lignin 123.123 1.3036 0.7526
Apple peels 177.3759 1.8842 1.0879
Coprinopsis challenged with bacteria Transcriptional response to Bacillus subtilis and Escherichia coli. Kombrink et al. 2018 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control 317.6042 23.472 13.5516
Bsubtilis 239.62 0.1017 0.0587
Ecoli 212.4792 14.0366 8.104
Early development 1 Time series expression profiling of basidiospore and oidium germination Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
BS 0h 1.1533 0.3958 0.2285
BS 4h 1.3991 1.289 0.7442
BS 8h 3.2921 1.4771 0.8528
BS 12h 2.1591 0.5532 0.3194
Oidia 0 h 35.0317 3.0686 1.7717
Oidia 18 h 55.1933 7.5751 4.3735
Sclerotia 49.0806 5.1836 2.9928
Early development 2 Time series expression profiling of mycelial growth, light induction and fruiting body initiation. Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
DM 12h 135.4566 3.4566 1.9957
DM 36h 146.9386 6.4011 3.6957
DM 60h 141.6689 10.4725 6.0463
DM 84h 152.3888 9.2528 5.3421
DM 108h 135.5201 10.4349 6.0246
DM 132h 116.1786 6.1424 3.5463
DM 156hAE 173.9569 26.7207 15.4272
ELI1hAE 179.7589 15.9202 9.1915
ELI2hAE 164.6414 15.9285 9.1963
LI2hAE 179.9572 18.1898 10.5019
LI6hAE 197.1486 13.1432 7.5882
LI12hAE 153.0445 17.3686 10.0278
LI18hAE 121.7168 4.2541 2.4561
LI 24hAE 155.0389 26.1463 15.0956
DM 156hAM 125.3572 11.1372 6.43
ELI1hAM 190.8253 34.4308 19.8787
ELI2hAM 189.8205 12.8487 7.4182
LI2hAM 185.4476 10.0347 5.7935
LI6hAM 170.3129 26.7074 15.4195
LI12hAM 104.8881 18.4787 10.6687
LI18hAM 71.2359 6.6522 3.8406
LI 24hAM 61.033 7.3077 4.2191
LI 24hHK 123.6005 9.9096 5.7213
L/D 6h 65.7877 2.2741 1.3129
L/D 12h 71.3458 3.7625 2.1723
L/D 18h 62.2051 5.263 3.0386
L/D 24h 68.8757 9.4469 5.4542
Fruiting body development RNA-Seq analysis of fruiting body development Krizsan et al. 2019 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Vegetative mycelium 139.6403 35.8978 20.7256
Hyphal knots 95.0137 4.9534 2.8599
Primordium 1 106.7079 24.631 14.2207
Primordium 2 84.5447 29.3049 16.9192
Young Fruiting body cap 43.31 8.2146 4.7427
Younf fruiting body gill 9.9268 2.6505 1.5302
Young fruiting body stipe 53.0015 8.4068 4.8536
Mature fruiting body cap_gill 24.6019 0.8415 0.4858
Mature fruiting body stipe 81.667 5.1448 2.9703
Nitrogen sources (12h incubation) Expression profiling on diverse nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Complete medium - control 188.5459 10.0924 5.8269
NH4NO3 175.14 12.5777 7.2617
Proline 154.8821 24.7817 14.3077
Tryptophan 128.4127 13.4893 7.7881
Isoleucin 157.2907 18.4129 10.6307
Arginine 196.9414 15.2248 8.79
Metionine 182.4173 3.6871 2.1287
NaNO3 174.6284 9.8089 5.6631
Plant biomass (12h incubation) Expression profiling on diverse plant biomasses as carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 188.5459 10.0924 5.8269
Citrus peel 131.6563 1.0328 0.5963
Poplar leaves 191.1144 15.3922 8.8867
Typha leaves 185.0018 24.757 14.2934
Overwintered Salix leaves 192.9168 23.1191 13.3478
Reed flowering 165.3451 40.8561 23.5883
Tigernut 196.9769 4.9156 2.838
Energy cane 180.8625 13.5259 7.8092
Guar gum 208.0206 41.5757 24.0037
Apple peels 285.012 19.183 11.0753
Cellobiose 227.3667 9.115 5.2626
Corn stalk 262.584 11.393 6.5777
Horse manure 230.3961 2.9638 1.7112
Lignin 200.2382 55.6246 32.1149
Microcrystalline cellulose 209.471 14.5215 8.384
Oak leaves 265.239 34.9051 20.1525
Pectin esterified 292.6168 19.4534 11.2314
Poplar sawdust 232.7331 20.5286 11.8522
Wheat bran 284.5525 18.0498 10.4211
Chlamydomonas reinhardtii 194.4387 19.8235 11.4451
Vertatryl alcohol 99.1713 9.4682 5.4665
Furfural 123.6044 2.9404 1.6976
Autoclaved mycelium 159.0568 12.2451 7.0697
Simple and complex carbon and nitrogen sources Expression profiling on diverse complex carbon and nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 318.49 46.1078 26.6203
Ribose 365.6447 9.7472 5.6275
Mannose 388.8797 9.9141 7.0103
Fructose 323.1884 49.042 28.3144
Arabinose 321.0228 51.7973 29.9052
Xylose 349.9907 42.8312 24.7286
Galacturonic acid 326.7926 51.9484 29.9924
Rhamnogalacturonan 301.8664 37.4559 21.6252
Pectin esterified 316.7789 37.1973 21.4759
Polygalacturonic acid 326.7955 12.7416 7.3564
Sodium acetate 383.3379 8.4116 4.8564
No nitrogen 292.7214 18.2666 10.5462
BSA 307.4165 14.8879 8.5955
Glutamine 299.1208 23.9504 13.8278
No phosphate 310.6277 20.6795 11.9393
No carbon 347.1779 16.8912 11.9439
No sulphur 300.0055 46.7245 26.9764
Simple and complex carbon sources (12h incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 188.5459 10.0924 5.8269
Amylose 213.0801 15.2782 8.8209
Fucose 198.1296 11.133 6.4277
Galactose 188.6726 12.8307 7.4078
Lactose 144.6954 18.1612 10.4854
Maltose 149.7183 33.0754 19.0961
Mannitol 136.9115 21.814 12.5943
Rhamnose 155.5207 17.1931 9.9265
Sorbitol 188.0914 16.091 9.2902
Trehalose 174.8262 33.699 19.4561
Glycerol 164.147 6.3679 3.6765
Glucuronic acid 226.9992 21.8535 12.6171
Arabinan 204.1162 19.4952 11.2556
Galactan 193.711 7.5054 4.3332
Galactomannan 272.1209 81.2502 46.9098
Glucan 172.3958 19.3333 11.1621
Xylan 252.2342 35.3888 20.4317
Xyloglucan 244.34 13.9749 8.0684
Arabinogalactan 241.5626 25.6963 14.8358
Pectin 160.4712 22.4501 12.9616
Rhamnogalacturonan 123.772 1.1594 0.6694
Polygalacturonic acid 186.5168 26.511 15.3062
Mannan 180.8555 4.1072 2.3713
Amylopectin 173.6993 6.5588 3.7867
Inulin 172.6571 35.5174 20.506
BSA 117.3474 12.4393 7.1818
Starvation induced by water agar transfer Expression profiling on starvation induced by transfer to water agar Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Control 141.6689 10.4725 6.0463
2h WAT 196.6461 20.3666 11.7587
4h WAT 150.34 34.0298 19.6471
8h WAT 120.4595 9.4688 5.4668
16h WAT 135.0974 19.1966 11.0832
24h WAT 143.5252 8.0695 4.6589
WAT hyphal knot -30h 187.3623 14.5582 8.4052
WAT hyphal knot -22h 195.9728 3.5564 2.0533
WAT hyphal knot -15h 175.4235 13.4459 7.763
WAT hyphal knot -7.5h 162.7489 7.4512 4.302
WAT hyphal knot 164.4138 12.0129 6.9356
WAT hyphal knot +7.5h 175.6901 21.8901 12.6383
Straw time series Time series expression profiling on straw as a carbon source Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 180.011 18.693 10.7924
Straw 3h 147.7546 4.3764 2.5267
Straw 6h 167.3499 38.7355 22.364
Straw 12h 193.0958 7.0467 4.0684
Straw 24h 217.7602 9.9374 5.7374
Stress conditions 1 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 122.813 33.663 19.4353
Frost (-20C, 30min) 152.5242 5.3647 3.0973
Heat shock (47C, 2h) 22.6188 2.1139 1.2204
High CO2 113.2056 27.2334 15.7232
Drought (4% agar, 12h) 168.7199 12.9689 7.4876
Oxidative (1mM H2O2, 3h) 85.9381 21.3011 12.2982
Acidic (pH4, 3h) 113.8883 14.7229 8.5002
Alkaline (pH9, 3h) 152.9077 6.6864 3.8604
Osmotic (sorbitol 2h) 93.9723 3.5774 2.0654
CongoRed (3h) 116.1722 30.8135 17.7902
Cobalt chloride control 90.5369 5.339 3.0825
Cobalt chloride 2mM 77.7841 9.238 5.3336
Stress conditions 2 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 195.0869 135.1815 78.0471
Cold stimulation 176.9582 20.0737 11.5896
Scratched surface 320.8331 71.7086 41.401
Ca2+, 200mM, 24h 124.7096 18.154 10.4812
Cu2+, 2mM, 6h 137.8721 18.4842 10.6719
Voriconazole 90.8729 5.7969 3.3469
Trichoderma interaction, early 200.4696 13.0474 7.5329
Trichoderma interaction 60h 84.4173 19.355 11.1746
Cobalt chloride 2mM repeat 130.1113 2.0035 1.1567
Hypoxia 96.477 20.3206 11.7321
Hypoxia control 97.0082 12.3644 7.1386
Protoplastation control 105.4456 7.1218 5.0359
Protoplastation 3.5h 61.5259 12.2353 8.6517
Protoplastation 1.5h 98.9176 58.6031 41.4386

General data

Systematic name -
Protein id CopciAB_541725.T0
Description Protein kinase domain

Annotation summary

0 100 200 300 387

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
Pfam PF00069 Protein kinase domain IPR000719 65 322

SignalP

Prediction Start End Score
No records

Transmembrane domains

Domain n Start End Length
No records

InterPro

Accession Description
IPR000719 Protein kinase domain
IPR011009 Protein kinase-like domain superfamily

GO

Go id Term Ontology
GO:0004672 protein kinase activity MF
GO:0005524 ATP binding MF
GO:0006468 protein phosphorylation BP

KEGG

KEGG Orthology
No records

EggNOG

COG category Description
T Protein kinase domain

CAZy

Class Family Subfamily
No records

Transcription factor

Group
No records

Conservation of CopciAB_541725 across fungi.

Arrow shows the origin of gene family containing CopciAB_541725.

Protein

Sequence id CopciAB_541725.T0
Sequence >CopciAB_541725.T0
MGILKDLQPGEHYWRDHYAWFLEQGFRLRPRYDPGWTPSWEKDKSKIEGTTEDSQVFHHHELNDAIRLADDRHVV
LKRINRAKYPEEVTILKHFSEETLASKPENHCVPVLAVLNPPDDPDYDILVLPILRDYDDPHFDTIGEAVDYIRQ
ILEGFAFLHEHHVAHRDVRRENIMMDPQAMGHSPWHFCDPQRQPAPNYDAKVTHKYTRTERRPRYYIIDFGYATQ
FKPEEIPPSILPKLASDGSVPEYKNHQPCNPFPIDVYVVGNMIRMDFLDGYPKPDAEEGREEKKRSTNRDFEFLR
PLIDAMIKENPNDRITMKEALSRFNDIVSKLDTSKLRSRAVLVGGRPRDEEFFEHIASTASHWYKTLRYVIRRIP
PIPREPPASSTS
Length 387

Coding

Sequence id CopciAB_541725.T0
Sequence >CopciAB_541725.T0
ATGGGGATCCTGAAGGACCTTCAACCTGGAGAGCACTACTGGAGGGATCATTACGCTTGGTTTCTTGAGCAAGGC
TTCCGATTGCGACCCCGATACGACCCTGGCTGGACCCCGTCCTGGGAGAAAGACAAGTCGAAGATCGAGGGAACG
ACTGAAGATTCCCAGGTTTTCCATCACCATGAGCTCAACGACGCCATTCGACTTGCTGACGATAGGCACGTGGTC
CTCAAGCGCATCAACCGGGCTAAGTACCCAGAGGAGGTGACGATTCTCAAACACTTCTCAGAAGAAACCCTTGCT
TCGAAGCCAGAGAACCATTGCGTCCCCGTATTGGCAGTCTTGAATCCTCCCGATGATCCTGATTATGACATTCTC
GTCTTACCTATCTTGCGAGATTACGACGACCCTCATTTCGACACCATCGGCGAGGCGGTCGACTATATTCGACAG
ATTCTAGAGGGATTCGCCTTCCTTCACGAACATCACGTTGCGCATCGAGATGTCAGAAGAGAAAACATAATGATG
GACCCCCAGGCCATGGGCCATAGCCCATGGCATTTTTGCGACCCTCAGAGGCAACCGGCTCCAAATTACGATGCA
AAGGTTACTCACAAGTACACGAGGACCGAGCGTAGGCCAAGGTACTACATAATTGACTTTGGGTACGCAACCCAG
TTCAAGCCCGAAGAGATACCACCTTCAATTCTACCGAAACTGGCGAGCGATGGCAGCGTCCCCGAATATAAGAAC
CATCAGCCATGCAATCCATTTCCCATCGACGTGTATGTCGTAGGAAACATGATTCGCATGGACTTCTTGGATGGT
TACCCCAAACCTGACGCTGAAGAAGGAAGAGAAGAAAAGAAGCGTAGCACGAATCGGGACTTTGAGTTCCTTCGA
CCGCTAATCGATGCCATGATCAAGGAGAACCCGAACGACAGAATCACAATGAAAGAGGCGCTCTCTCGTTTCAAC
GATATTGTTTCCAAGCTGGACACCAGTAAGCTACGAAGCAGGGCTGTCCTGGTTGGTGGGCGCCCTCGTGACGAG
GAGTTTTTCGAGCACATCGCCAGTACAGCATCCCACTGGTACAAGACGTTGCGTTATGTTATCCGCAGGATTCCA
CCTATTCCGAGGGAGCCTCCTGCATCTTCGACATCTTAA
Length 1164

Transcript

Sequence id CopciAB_541725.T0
Sequence >CopciAB_541725.T0
GCTTTCACCTCTGCGCTCGTTCTTCTGAAGACGTAGGACAACATCAATATGGGGATCCTGAAGGACCTTCAACCT
GGAGAGCACTACTGGAGGGATCATTACGCTTGGTTTCTTGAGCAAGGCTTCCGATTGCGACCCCGATACGACCCT
GGCTGGACCCCGTCCTGGGAGAAAGACAAGTCGAAGATCGAGGGAACGACTGAAGATTCCCAGGTTTTCCATCAC
CATGAGCTCAACGACGCCATTCGACTTGCTGACGATAGGCACGTGGTCCTCAAGCGCATCAACCGGGCTAAGTAC
CCAGAGGAGGTGACGATTCTCAAACACTTCTCAGAAGAAACCCTTGCTTCGAAGCCAGAGAACCATTGCGTCCCC
GTATTGGCAGTCTTGAATCCTCCCGATGATCCTGATTATGACATTCTCGTCTTACCTATCTTGCGAGATTACGAC
GACCCTCATTTCGACACCATCGGCGAGGCGGTCGACTATATTCGACAGATTCTAGAGGGATTCGCCTTCCTTCAC
GAACATCACGTTGCGCATCGAGATGTCAGAAGAGAAAACATAATGATGGACCCCCAGGCCATGGGCCATAGCCCA
TGGCATTTTTGCGACCCTCAGAGGCAACCGGCTCCAAATTACGATGCAAAGGTTACTCACAAGTACACGAGGACC
GAGCGTAGGCCAAGGTACTACATAATTGACTTTGGGTACGCAACCCAGTTCAAGCCCGAAGAGATACCACCTTCA
ATTCTACCGAAACTGGCGAGCGATGGCAGCGTCCCCGAATATAAGAACCATCAGCCATGCAATCCATTTCCCATC
GACGTGTATGTCGTAGGAAACATGATTCGCATGGACTTCTTGGATGGTTACCCCAAACCTGACGCTGAAGAAGGA
AGAGAAGAAAAGAAGCGTAGCACGAATCGGGACTTTGAGTTCCTTCGACCGCTAATCGATGCCATGATCAAGGAG
AACCCGAACGACAGAATCACAATGAAAGAGGCGCTCTCTCGTTTCAACGATATTGTTTCCAAGCTGGACACCAGT
AAGCTACGAAGCAGGGCTGTCCTGGTTGGTGGGCGCCCTCGTGACGAGGAGTTTTTCGAGCACATCGCCAGTACA
GCATCCCACTGGTACAAGACGTTGCGTTATGTTATCCGCAGGATTCCACCTATTCCGAGGGAGCCTCCTGCATCT
TCGACATCTTAATTCAGCTTTCTGTGCTTGTATCTGTGTAGGGTAGAGGGGTTAATGATCATCGCCCACTTAGCG
TAAGCTGGGTATCC
Length 1289

Gene

Sequence id CopciAB_541725.T0
Sequence >CopciAB_541725.T0
GCTTTCACCTCTGCGCTCGTTCTTCTGAAGACGTAGGACAACATCAATATGGGGATCCTGAAGGACCTTCAACCT
GGAGAGCACTACTGGAGGGATCATTACGCTTGGTTTCTTGAGCAAGGCTTCCGATTGCGACCCCGATACGACCCT
GGCTGGACCCCGTCCTGGGAGAAAGACAAGTCGAAGATCGAGGGAACGACTGAAGATTCCCAGGTTTTCCATGTA
AGGATTACCAGCTCCTTCATGGCGTAGCGCTAACCTTCATTATTTAGCACCATGAGCTCAACGACGCCATTCGAC
TTGCTGACGATAGGCACGTGGTCCTCAAGCGCATCAACCGGGCTAAGTACCCAGAGGAGGTGACGATTCTCAAAC
ACTTCTCAGAAGAAACCCTTGCTTCGAAGCCAGAGAACCATTGCGTCCCCGTATTGGCAGTCTTGAATCCTCCCG
ATGATCCTGATTATGACATTCTCGTCTTACCTATCTTGCGAGATTACGACGACCCTCATTTCGACACCATCGGCG
AGGCGGTCGACTATATTCGACAGATTCTAGAGGTGTGTAGACACTACTGTCAAGTCCCTTGCTCTAAGCCCCCAT
TTTTTCAGGGATTCGCCTTCCTTCACGAACATCACGTTGCGCATCGGTGCGTATCAATACTCCTTCCTCTCGAGC
AAGCGCTAACTCTACCGATCTTCTAGAGATGTCAGAAGAGAAAACATAATGATGGACCCCCAGGCCATGGGCCAT
AGCCCATGGCATTTTTGCGACCCTCAGAGGCAACCGGCTCCAAATTACGATGCAAAGGTTACTCACAAGTACACG
AGGACCGAGCGTAGGCCAAGGTACTACATAATTGACTTTGGGTACGCAACCCAGTTCAAGCCCGAAGAGATACCA
CCTTCAATTCTACCGAAACTGGCGAGCGATGGCAGCGTCCCCGAATATAAGAACCATCAGCCATGCAATCCATTT
CCCATCGACGTGTATGTCGTAGGAAACATGATTCGCATGGACTTCTTGGATGTAAGTGCAGTGCTCGACCGCGCC
CGGATGCCCTGTCTTACCCCGTTTAACCAGGGTTACCCCAAACCTGACGCTGAAGAAGGAAGAGAAGAAAAGAAG
CGTAGCACGAATCGGGACTTTGAGTTCCTTCGACCGCTAATCGATGCCATGATCAAGGAGAACCCGAACGACAGA
ATCACAATGAAAGAGGCGCTCTCTCGTTTCAACGATATTGTTTCCAAGCTGGACACCAGTAAGCTACGAAGCAGG
GCTGTCCTGGTTGGTGGGCGCCCTCGTGACGAGGAGTTTTTCGAGCACATCGCCAGTACAGCATCCCACTGGTAC
AAGACGTTGCGTTATGTTATCCGCAGGATTCCACCTATTCCGAGGGAGCCTCCTGCATCTTCGACATCTTAATTC
AGCTTTCTGTGCTTGTATCTGTGTAGGGTAGAGGGGTTAATGATCATCGCCCACTTAGCGTAAGCTGGGTATCC
Length 1499