CopciAB_542339
Coprinopsis cinerea A43mutB43mut pab1-1 #326

General data

Systematic name CopciAB_542339 Strain Coprinopsis cinerea Okayama 7
Standard name - Synonyms 542339
Uniprot id Functional description other FunK1 protein kinase
Location scaffold_6:2568592..2570124 Strand -
Gene length (nt) 1533 Transcript length (nt) 1422
CDS length (nt) 1128 Protein length (aa) 375

Reciprocal best hits in model fungi

Strain name Gene / Protein name

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
0

Expression

Name Summary Attribution Assay type
Carbon metabolism Transcriptional changes along alternative morphogenetic paths of C. cinerea Xie et al. 2020 RNA-Seq
Sample Mean cpm SD cpm Se of mean
sclerotia 0.6518 0.1457 0.0841
oidia 2.2761 0.3721 0.2148
vegetative_mycelium 2.2126 0.3195 0.1845
primordia 3.9707 0.7777 0.449
hyphal_knot 0.7873 0.3159 0.1824
young_fruiting_body 2.5487 0.9479 0.5473
Complex carbon sources 1 (long incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control - glucose 0.6089 0.4068 0.2349
Wheat bran 6.8043 2.331 1.3458
Horse manure 4.7131 3.2008 1.848
Oak leaves 3.9181 1.2074 0.6971
Hay 5.8268 1.0832 0.6254
Corn stalk 4.8629 2.5804 1.4898
Pectine 5.0704 0.4024 0.2323
Microcrystalline cellulose 3.592 0.0717 0.0414
Xylose 1.4433 0.2035 0.1175
Cellobiose 0.6833 0.1418 0.0819
Lignin 2.4123 2.0306 1.1724
Apple peels 1.0403 0.1405 0.0811
Coprinopsis challenged with bacteria Transcriptional response to Bacillus subtilis and Escherichia coli. Kombrink et al. 2018 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control 4.3714 0.4902 0.283
Bsubtilis 2.96 0.9827 0.5674
Ecoli 2.1378 0.6097 0.352
Early development 1 Time series expression profiling of basidiospore and oidium germination Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
BS 0h 0.3371 0.2026 0.117
BS 4h 0.1502 0.0215 0.0124
BS 8h 0.2093 0.1549 0.0895
BS 12h 0.2697 0.191 0.1103
Oidia 0 h 1.2023 0.3122 0.1803
Oidia 18 h 0.5291 0.1214 0.0701
Sclerotia 0.1041 0.1803 0.1041
Early development 2 Time series expression profiling of mycelial growth, light induction and fruiting body initiation. Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
DM 12h 3.9752 0.7785 0.4495
DM 36h 3.8097 0.7734 0.4465
DM 60h 4.3189 1.0103 0.5833
DM 84h 3.859 0.968 0.5589
DM 108h 3.7277 0.5025 0.2901
DM 132h 3.312 0.9299 0.5369
DM 156hAE 1.51 0.2672 0.1543
ELI1hAE 4.067 2.0635 1.1914
ELI2hAE 4.917 1.4019 0.8094
LI2hAE 5.6013 0.6727 0.3884
LI6hAE 3.7873 1.1052 0.6381
LI12hAE 4.2136 0.2051 0.1184
LI18hAE 4.0037 1.0964 0.633
LI 24hAE 1.6592 0.8306 0.4796
DM 156hAM 3.5723 1.5674 0.905
ELI1hAM 6.2732 2.4139 1.3937
ELI2hAM 6.9839 0.9709 0.5605
LI2hAM 7.9755 0.6475 0.3739
LI6hAM 4.1687 1.1714 0.6763
LI12hAM 3.3898 0.7892 0.4557
LI18hAM 2.9731 1.7964 1.0372
LI 24hAM 0.2706 0.0975 0.0563
LI 24hHK 2.5434 1.1711 0.6761
L/D 6h 2.9286 0.8899 0.5138
L/D 12h 3.916 1.2087 0.6978
L/D 18h 2.6155 1.4215 0.8207
L/D 24h 1.799 0.3826 0.2209
Fruiting body development RNA-Seq analysis of fruiting body development Krizsan et al. 2019 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Vegetative mycelium 0.6202 0.3764 0.2173
Hyphal knots 1.9588 1.3721 0.7922
Primordium 1 2.2376 0.7634 0.4408
Primordium 2 1.7264 0.6002 0.3465
Young Fruiting body cap 0.2115 0.0947 0.0547
Younf fruiting body gill 3.5492 1.3734 0.7929
Young fruiting body stipe 0.2091 0.1993 0.1151
Mature fruiting body cap_gill 0.8433 0.1936 0.1118
Mature fruiting body stipe 0.0211 0.0366 0.0211
Nitrogen sources (12h incubation) Expression profiling on diverse nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Complete medium - control 4.2612 0.8047 0.4646
NH4NO3 4.6564 1.5335 0.8854
Proline 5.2701 2.1071 1.2165
Tryptophan 2.033 1.1612 0.6704
Isoleucin 4.2619 1.4189 0.8192
Arginine 7.4699 0.7941 0.4585
Metionine 3.5244 0.7862 0.4539
NaNO3 5.4271 0.643 0.3712
Plant biomass (12h incubation) Expression profiling on diverse plant biomasses as carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 4.2612 0.8047 0.4646
Citrus peel 8.3756 1.2741 0.7356
Poplar leaves 5.2717 0.3481 0.201
Typha leaves 7.3176 1.3746 0.7936
Overwintered Salix leaves 7.4692 0.7634 0.4407
Reed flowering 8.4896 0.8815 0.5089
Tigernut 12.9775 2.619 1.5121
Energy cane 5.8015 1.0067 0.5812
Guar gum 6.4954 4.5908 2.6505
Apple peels 8.3654 0.6482 0.3742
Cellobiose 7.9984 0.625 0.3608
Corn stalk 8.6158 2.2759 1.314
Horse manure 4.7743 1.5435 0.8911
Lignin 7.1804 2.1407 1.2359
Microcrystalline cellulose 7.7185 2.7981 1.6155
Oak leaves 8.9984 1.4741 0.8511
Pectin esterified 10.6286 2.1331 1.2316
Poplar sawdust 4.6943 1.0272 0.5931
Wheat bran 11.6358 3.023 1.7453
Chlamydomonas reinhardtii 4.9153 0.7901 0.4561
Vertatryl alcohol 5.8184 1.6956 0.9789
Furfural 7.0517 2.159 1.2465
Autoclaved mycelium 6.5031 0.4792 0.2766
Simple and complex carbon and nitrogen sources Expression profiling on diverse complex carbon and nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 3.5109 0.4769 0.2754
Ribose 4.1307 1.0126 0.5846
Mannose 3.6973 0.4372 0.3091
Fructose 3.1547 0.4341 0.2506
Arabinose 2.6933 0.5867 0.3387
Xylose 4.4295 1.4243 0.8223
Galacturonic acid 5.3209 0.7078 0.4086
Rhamnogalacturonan 3.9837 1.7296 0.9986
Pectin esterified 3.8187 0.3479 0.2009
Polygalacturonic acid 4.5563 0.4647 0.2683
Sodium acetate 4.4009 0.5473 0.316
No nitrogen 3.1114 0.7409 0.4277
BSA 4.4886 1.4983 0.865
Glutamine 3.6341 0.4562 0.2634
No phosphate 3.0647 0.5215 0.3011
No carbon 3.8842 0.4382 0.3099
No sulphur 2.28 0.1892 0.1092
Simple and complex carbon sources (12h incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 4.2612 0.8047 0.4646
Amylose 3.0515 0.3145 0.1816
Fucose 3.9623 0.9951 0.5745
Galactose 3.1244 0.9155 0.5286
Lactose 3.8147 0.4786 0.2763
Maltose 2.8049 1.0806 0.6239
Mannitol 3.4005 1.0094 0.5828
Rhamnose 4.5889 1.3179 0.7609
Sorbitol 4.0625 0.3651 0.2108
Trehalose 3.812 0.703 0.4058
Glycerol 3.5026 1.6598 0.9583
Glucuronic acid 3.1992 1.0492 0.6058
Arabinan 4.9021 1.8257 1.0541
Galactan 8.6338 0.7154 0.413
Galactomannan 6.104 0.8071 0.466
Glucan 5.7101 0.9048 0.5224
Xylan 7.0167 1.744 1.0069
Xyloglucan 5.0831 1.0248 0.5916
Arabinogalactan 4.0368 0.487 0.2811
Pectin 2.5084 0.2572 0.1485
Rhamnogalacturonan 3.9881 0.4529 0.2615
Polygalacturonic acid 5.3622 1.0969 0.6333
Mannan 4.7815 0.9589 0.5536
Amylopectin 5.659 3.3042 1.9077
Inulin 4.1287 0.642 0.3706
BSA 14.4899 1.2867 0.7429
Starvation induced by water agar transfer Expression profiling on starvation induced by transfer to water agar Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Control 4.3189 1.0103 0.5833
2h WAT 5.7259 0.4646 0.2682
4h WAT 4.7045 1.0623 0.6133
8h WAT 2.9237 0.308 0.1778
16h WAT 2.1797 0.9051 0.5226
24h WAT 1.9538 0.6483 0.3743
WAT hyphal knot -30h 6.1066 1.3717 0.792
WAT hyphal knot -22h 4.2581 1.2237 0.7065
WAT hyphal knot -15h 5.1147 0.7866 0.4541
WAT hyphal knot -7.5h 3.7389 0.2592 0.1497
WAT hyphal knot 4.0781 1.1213 0.6474
WAT hyphal knot +7.5h 3.4848 2.253 1.3008
Straw time series Time series expression profiling on straw as a carbon source Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 7.1134 1.4313 0.8264
Straw 3h 10.229 5.286 3.0518
Straw 6h 11.5995 6.5173 3.7628
Straw 12h 10.6797 1.2718 0.7342
Straw 24h 8.2466 4.8248 2.7856
Stress conditions 1 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 4.3441 0.9236 0.5332
Frost (-20C, 30min) 1.3958 0.5121 0.2956
Heat shock (47C, 2h) 0.8138 0.5687 0.3283
High CO2 2.3315 1.2334 0.7121
Drought (4% agar, 12h) 1.4547 0.7313 0.4222
Oxidative (1mM H2O2, 3h) 2.5804 0.9065 0.5234
Acidic (pH4, 3h) 4.4286 0.8382 0.4839
Alkaline (pH9, 3h) 4.588 0.3633 0.2098
Osmotic (sorbitol 2h) 1.9295 1.0213 0.5897
CongoRed (3h) 2.7996 0.955 0.5514
Cobalt chloride control 1.9249 0.1954 0.1128
Cobalt chloride 2mM 0.9788 0.5435 0.3138
Stress conditions 2 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 5.9448 1.0642 0.6144
Cold stimulation 4.8241 0.8599 0.4965
Scratched surface 6.741 0.8739 0.5045
Ca2+, 200mM, 24h 2.0493 0.4537 0.262
Cu2+, 2mM, 6h 4.049 0.2687 0.1552
Voriconazole 1.8898 0.2631 0.1519
Trichoderma interaction, early 3.3689 1.1396 0.6579
Trichoderma interaction 60h 7.6579 13.2638 7.6579
Cobalt chloride 2mM repeat 9.0828 2.568 1.4826
Hypoxia 1.3296 0.7792 0.4499
Hypoxia control 1.6866 1.2832 0.7408
Protoplastation control 1.9569 0.7696 0.5442
Protoplastation 3.5h 0.1212 0.1714 0.1212
Protoplastation 1.5h 0.644 0.7894 0.5582

General data

Systematic name -
Protein id CopciAB_542339.T0
Description other FunK1 protein kinase

Annotation summary

0 100 200 300 375

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
Pfam PF17667 Fungal protein kinase IPR040976 105 241

SignalP

Prediction Start End Score
No records

Transmembrane domains

Domain n Start End Length
No records

InterPro

Accession Description
IPR008266 Tyrosine-protein kinase, active site
IPR011009 Protein kinase-like domain superfamily
IPR040976 Fungal-type protein kinase

GO

Go id Term Ontology
GO:0004672 protein kinase activity MF
GO:0006468 protein phosphorylation BP

KEGG

KEGG Orthology
No records

EggNOG

COG category Description
S other FunK1 protein kinase

CAZy

Class Family Subfamily
No records

Transcription factor

Group
No records

Conservation of CopciAB_542339 across fungi.

Arrow shows the origin of gene family containing CopciAB_542339.

Protein

Sequence id CopciAB_542339.T0
Sequence >CopciAB_542339.T0
MGQFATVNLQISDSTSSTTIPAPETRKGVCCRRRPAQRPNSLGRVQSAKPLGMVYDEMKESLVKDSWISEGRTPE
YGCFEDAAGTPGIAALVDWEDCVQLRHEGSQKPKSIWNRTKRRLVSSRYGSPVCNFKTDLEFLCIVSDAIDTHEE
LVEQDILHWDISTANILVIRSPTIPWYSILIDLDLAVMPPSVKRAPVNCRTGTRESQSINVLDSSRMGVPTLPYS
YLDDLESFFWVFCIIVTGYVSKGKQAQPPQWIQRWRDADPSTAGAAKMAFLFAPPLAPVDLTWGKHVQRLFWDLR
RFFMDMTLLVSDVAAGRSEMTMEELFSKRVEHYKTVRGHIKKAIDAITAEAPPEKRPSEHFTSGESEPKRRRSER
Length 375

Coding

Sequence id CopciAB_542339.T0
Sequence >CopciAB_542339.T0
ATGGGCCAATTCGCAACAGTGAATTTACAGATCTCAGACTCTACTTCATCTACAACCATACCGGCTCCAGAGACT
CGCAAGGGGGTGTGCTGCCGACGTCGACCAGCCCAACGCCCGAACTCTCTCGGACGGGTGCAAAGTGCGAAGCCT
CTAGGGATGGTCTATGATGAGATGAAAGAGTCGCTAGTCAAGGACAGTTGGATTTCAGAGGGGAGGACACCGGAG
TATGGTTGCTTCGAAGACGCCGCTGGCACACCTGGCATTGCCGCGCTGGTGGACTGGGAGGACTGTGTCCAACTT
CGCCATGAAGGGAGCCAGAAGCCAAAATCCATCTGGAATCGTACCAAGCGCAGACTCGTCTCTAGTCGGTATGGG
TCTCCGGTCTGCAACTTCAAGACGGACTTGGAGTTCCTCTGTATAGTCTCTGATGCCATTGACACTCATGAGGAA
CTCGTCGAGCAAGACATCTTGCATTGGGATATCAGCACTGCCAATATTCTCGTCATCAGGAGCCCGACAATTCCG
TGGTATAGCATCTTAATCGACCTTGACTTGGCCGTGATGCCACCCTCTGTGAAAAGAGCGCCTGTTAATTGTAGA
ACAGGAACTCGCGAATCTCAATCCATAAATGTCCTGGATAGTTCAAGGATGGGTGTGCCAACACTCCCTTATTCA
TACCTGGACGACTTGGAATCGTTCTTCTGGGTCTTCTGCATAATCGTCACTGGCTACGTCAGCAAGGGAAAGCAG
GCACAACCTCCTCAGTGGATTCAACGATGGAGGGACGCAGACCCGAGCACGGCTGGTGCCGCAAAAATGGCCTTT
CTCTTTGCACCCCCCTTAGCTCCCGTCGATCTGACCTGGGGAAAACACGTTCAGCGGCTGTTCTGGGATCTCCGC
AGGTTCTTCATGGATATGACTTTACTCGTTTCTGATGTTGCCGCTGGGCGATCGGAAATGACGATGGAGGAACTC
TTCAGCAAGCGCGTCGAACATTATAAAACTGTTCGCGGCCACATCAAGAAAGCTATCGACGCCATCACAGCAGAA
GCCCCTCCAGAAAAACGACCATCCGAGCATTTTACATCGGGGGAGTCAGAGCCCAAGCGTCGTCGCTCTGAGCGC
TAG
Length 1128

Transcript

Sequence id CopciAB_542339.T0
Sequence >CopciAB_542339.T0
GGACTTGACCACCACCATTGTAACCTCAATGCGCTTGCTTTATCATCAAGTGCTATAAAATATGGGCCAATTCGC
AACAGTGAATTTACAGATCTCAGACTCTACTTCATCTACAACCATACCGGCTCCAGAGACTCGCAAGGGGGTGTG
CTGCCGACGTCGACCAGCCCAACGCCCGAACTCTCTCGGACGGGTGCAAAGTGCGAAGCCTCTAGGGATGGTCTA
TGATGAGATGAAAGAGTCGCTAGTCAAGGACAGTTGGATTTCAGAGGGGAGGACACCGGAGTATGGTTGCTTCGA
AGACGCCGCTGGCACACCTGGCATTGCCGCGCTGGTGGACTGGGAGGACTGTGTCCAACTTCGCCATGAAGGGAG
CCAGAAGCCAAAATCCATCTGGAATCGTACCAAGCGCAGACTCGTCTCTAGTCGGTATGGGTCTCCGGTCTGCAA
CTTCAAGACGGACTTGGAGTTCCTCTGTATAGTCTCTGATGCCATTGACACTCATGAGGAACTCGTCGAGCAAGA
CATCTTGCATTGGGATATCAGCACTGCCAATATTCTCGTCATCAGGAGCCCGACAATTCCGTGGTATAGCATCTT
AATCGACCTTGACTTGGCCGTGATGCCACCCTCTGTGAAAAGAGCGCCTGTTAATTGTAGAACAGGAACTCGCGA
ATCTCAATCCATAAATGTCCTGGATAGTTCAAGGATGGGTGTGCCAACACTCCCTTATTCATACCTGGACGACTT
GGAATCGTTCTTCTGGGTCTTCTGCATAATCGTCACTGGCTACGTCAGCAAGGGAAAGCAGGCACAACCTCCTCA
GTGGATTCAACGATGGAGGGACGCAGACCCGAGCACGGCTGGTGCCGCAAAAATGGCCTTTCTCTTTGCACCCCC
CTTAGCTCCCGTCGATCTGACCTGGGGAAAACACGTTCAGCGGCTGTTCTGGGATCTCCGCAGGTTCTTCATGGA
TATGACTTTACTCGTTTCTGATGTTGCCGCTGGGCGATCGGAAATGACGATGGAGGAACTCTTCAGCAAGCGCGT
CGAACATTATAAAACTGTTCGCGGCCACATCAAGAAAGCTATCGACGCCATCACAGCAGAAGCCCCTCCAGAAAA
ACGACCATCCGAGCATTTTACATCGGGGGAGTCAGAGCCCAAGCGTCGTCGCTCTGAGCGCTAGCGGGGTAGGGA
GGAGGACACCGCGGTGTGACCAATTCGAAGGGCGGGGTGCATGTTCAGGGAAGGGATACGCACTCCTGCACACAG
CTTCCAACAACGGTCGAACATGATCGTAAAGAAGTCATGTTGCTTGCGCATGGCTAGGTCCTGGCGCAAGATTGC
TGTGCAGCGGGAAAGTCGTGTTCATTTCTATTTTGTGTCGAGTAACCAATTACACTGTATTCCCGGTGTTTC
Length 1422

Gene

Sequence id CopciAB_542339.T0
Sequence >CopciAB_542339.T0
GGACTTGACCACCACCATTGTAACCTCAATGCGCTTGCTTTATCATCAAGTGCTATAAAATATGGGCCAATTCGC
AACAGTGAATTTACAGATCTCAGACTCTACTTCATCTACAACCATACCGGCTCCAGAGACTCGCAAGGGGGTGTG
CTGCCGACGTCGACCAGCCCAACGCCCGAACTCTCTCGGACGGGTGCAAAGTGCGAAGCCTCTAGGGATGGTCTA
TGATGAGATGAAAGAGTCGCTAGTCAAGGACAGTTGGATTTCAGAGGGGAGGACACCGGAGTATGGTTGCTTCGA
AGACGCCGCTGGCACACCTGGCATTGCCGCGCTGGTGGACTGGGAGGACTGTGTCCAACTTCGCCATGAAGGGAG
CCAGAAGCCAAAATCCATCTGGAATCGTACCAAGCGCAGACTCGTCTCTAGTCGGTATGGGTCTCCGGTCTGCAA
CTTCAAGACGGACTTGGAGTTCCTCTGTATAGTCTCTGATGCCATTGACAGTATGTATGTCGGTTTTAAGAATTC
TTCATCTGGGACTGATATGATGCGTTTCAGCTCATGAGGAACTCGTCGAGCAAGACATCTTGCATTGGGATATCA
GCACTGCCAATATTCTCGTCATCAGGAGCCCGACAATTCCGTGGTATAGCATCTTAATCGACCTTGACTTGGCCG
TGATGCCACCCTCTGTGAAAAGAGCGCCTGTTAATTGTAGAACAGTAAGTTATCTATTTGTTGTTTCTCTGATGA
CCAACTGCTGACAGATTTCGCACAGGGAACTCGCGAATCTCAATCCATAAATGTCCTGGATAGTTCAAGGATGGG
TGTGCCAACACTCCCTTATTCATACCTGGACGACTTGGAATCGTTCTTCTGGGTCTTCTGCATAATCGTCACTGG
CTACGTCAGCAAGGGAAAGCAGGCACAACCTCCTCAGTGGATTCAACGATGGAGGGACGCAGACCCGAGCACGGC
TGGTGCCGCAAAAATGGCCTTTCTCTTTGCACCCCCCTTAGCTCCCGTCGATCTGACCTGGGGAAAACACGTTCA
GCGGCTGTTCTGGGATCTCCGCAGGTTCTTCATGGATATGACTTTACTCGTTTCTGATGTTGCCGCTGGGCGATC
GGAAATGACGATGGAGGAACTCTTCAGCAAGCGCGTCGAACATTATAAAACTGTTCGCGGCCACATCAAGAAAGC
TATCGACGCCATCACAGCAGAAGCCCCTCCAGAAAAACGACCATCCGAGCATTTTACATCGGGGGAGTCAGAGCC
CAAGCGTCGTCGCTCTGAGCGCTAGCGGGGTAGGGAGGAGGACACCGCGGTGTGACCAATTCGAAGGGCGGGGTG
CATGTTCAGGGAAGGGATACGCACTCCTGCACACAGCTTCCAACAACGGTCGAACATGATCGTAAAGAAGTCATG
TTGCTTGCGCATGGCTAGGTCCTGGCGCAAGATTGCTGTGCAGCGGGAAAGTCGTGTTCATTTCTATTTTGTGTC
GAGTAACCAATTACACTGTATTCCCGGTGTTTC
Length 1533