CopciAB_542340
Coprinopsis cinerea A43mutB43mut pab1-1 #326

General data

Systematic name CopciAB_542340 Strain Coprinopsis cinerea Okayama 7
Standard name - Synonyms 542340
Uniprot id Functional description other FunK1 protein kinase
Location scaffold_6:2570368..2572128 Strand -
Gene length (nt) 1761 Transcript length (nt) 1649
CDS length (nt) 1011 Protein length (aa) 336

Reciprocal best hits in model fungi

Strain name Gene / Protein name

Orthologs in mushroom models

Strain name Gene / Protein name Pident E-value Bits
0

Expression

Name Summary Attribution Assay type
Carbon metabolism Transcriptional changes along alternative morphogenetic paths of C. cinerea Xie et al. 2020 RNA-Seq
Sample Mean cpm SD cpm Se of mean
sclerotia 1.174 0.1683 0.0972
oidia 4.0779 1.9904 1.1492
vegetative_mycelium 3.5021 1.1404 0.6584
primordia 51.6206 4.1538 2.3982
hyphal_knot 3.7639 0.2342 0.1352
young_fruiting_body 179.2509 17.3643 10.0253
Complex carbon sources 1 (long incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control - glucose 1.2767 0.7143 0.4124
Wheat bran 8.1744 2.1776 1.2572
Horse manure 3.8432 1.705 0.9844
Oak leaves 4.3691 1.0308 0.5951
Hay 6.4367 1.2378 0.7146
Corn stalk 5.3132 1.8074 1.0435
Pectine 3.3899 0.5475 0.3161
Microcrystalline cellulose 1.3374 0.1465 0.0846
Xylose 2.3754 0.2538 0.1465
Cellobiose 1.8518 0.3874 0.2236
Lignin 1.8942 1.2224 0.7058
Apple peels 1.6285 0.4757 0.2746
Coprinopsis challenged with bacteria Transcriptional response to Bacillus subtilis and Escherichia coli. Kombrink et al. 2018 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Control 4.5007 0.9302 0.537
Bsubtilis 2.8813 0.9808 0.5663
Ecoli 1.6631 0.6554 0.3784
Early development 1 Time series expression profiling of basidiospore and oidium germination Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
BS 0h 8.8015 2.2797 1.3162
BS 4h 1.4103 0.5409 0.3123
BS 8h 1.3658 0.4031 0.2328
BS 12h 1.321 0.1914 0.1105
Oidia 0 h 0.1436 0.1262 0.0729
Oidia 18 h 0.7855 0.5053 0.2917
Sclerotia 0.3278 0.2937 0.1695
Early development 2 Time series expression profiling of mycelial growth, light induction and fruiting body initiation. Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
DM 12h 1.3641 0.394 0.2275
DM 36h 0.8549 0.1501 0.0867
DM 60h 1.3321 1.1149 0.6437
DM 84h 3.1719 0.4629 0.2673
DM 108h 2.7891 0.7547 0.4357
DM 132h 1.8122 0.1932 0.1115
DM 156hAE 4.0689 0.8101 0.4677
ELI1hAE 1.9331 0.1295 0.0748
ELI2hAE 2.1486 0.7144 0.4125
LI2hAE 2.2788 0.9501 0.5486
LI6hAE 1.9882 0.8444 0.4875
LI12hAE 1.7505 0.9425 0.5441
LI18hAE 0.9586 1.4871 0.8586
LI 24hAE 2.3662 1.6848 0.9727
DM 156hAM 2.1148 0.6014 0.3472
ELI1hAM 1.7996 0.6739 0.3891
ELI2hAM 2.5587 0.3263 0.1884
LI2hAM 2.1916 0.9315 0.5378
LI6hAM 2.3221 1.4729 0.8504
LI12hAM 2.3631 0.6567 0.3791
LI18hAM 0.4379 0.2591 0.1496
LI 24hAM 1.3113 0.7895 0.4558
LI 24hHK 1.1429 0.5667 0.3272
L/D 6h 1.4758 0.7806 0.4507
L/D 12h 1.9118 0.2391 0.1381
L/D 18h 1.0021 0.4768 0.2753
L/D 24h 1.616 0.4563 0.2634
Fruiting body development RNA-Seq analysis of fruiting body development Krizsan et al. 2019 RNA-Seq
Sample Mean cpm SD cpm Se of mean
Vegetative mycelium 2.1346 1.0256 0.5921
Hyphal knots 1.8344 0.9325 0.5384
Primordium 1 2.0245 0.3409 0.1968
Primordium 2 1.7437 0.4887 0.2821
Young Fruiting body cap 1.2271 0.349 0.2015
Younf fruiting body gill 45.5292 12.6226 7.2877
Young fruiting body stipe 0.8166 0.6415 0.3703
Mature fruiting body cap_gill 6.1646 2.7154 1.5677
Mature fruiting body stipe 0.0943 0.083 0.0479
Nitrogen sources (12h incubation) Expression profiling on diverse nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Complete medium - control 7.5802 1.3971 0.8066
NH4NO3 6.4523 1.0809 0.6241
Proline 4.3574 1.4722 0.85
Tryptophan 3.5408 1.1768 0.6794
Isoleucin 3.6639 0.7699 0.4445
Arginine 3.971 1.1435 0.6602
Metionine 5.1205 0.743 0.429
NaNO3 4.7623 1.0006 0.5777
Plant biomass (12h incubation) Expression profiling on diverse plant biomasses as carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 7.5802 1.3971 0.8066
Citrus peel 2.7114 0.4303 0.2484
Poplar leaves 8.0505 0.6672 0.3852
Typha leaves 8.0415 2.3755 1.3715
Overwintered Salix leaves 8.5508 3.4535 1.9939
Reed flowering 7.567 4.0847 2.3583
Tigernut 6.2605 1.2277 0.7088
Energy cane 8.1004 1.1183 0.6457
Guar gum 7.734 2.2248 1.2845
Apple peels 4.3768 2.9578 1.7077
Cellobiose 5.9725 0.4249 0.2453
Corn stalk 10.0739 3.1635 1.8265
Horse manure 8.1237 0.4544 0.2624
Lignin 2.8092 0.7241 0.4181
Microcrystalline cellulose 4.8258 1.2283 0.7092
Oak leaves 9.6421 2.2629 1.3065
Pectin esterified 8.4656 0.0947 0.0547
Poplar sawdust 6.1453 1.0509 0.6067
Wheat bran 8.6046 0.9701 0.5601
Chlamydomonas reinhardtii 5.5241 1.0817 0.6245
Vertatryl alcohol 1.5634 0.23 0.1328
Furfural 2.5313 0.6894 0.398
Autoclaved mycelium 5.675 0.9142 0.5278
Simple and complex carbon and nitrogen sources Expression profiling on diverse complex carbon and nitrogen sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 6.6013 1.486 0.8579
Ribose 6.4654 1.3242 0.7645
Mannose 7.3387 0.9534 0.6741
Fructose 6.731 0.2319 0.1339
Arabinose 7.1205 1.7327 1.0004
Xylose 7.8092 1.7041 0.9839
Galacturonic acid 7.0804 1.4732 0.8506
Rhamnogalacturonan 8.2761 1.2748 0.736
Pectin esterified 7.048 0.8539 0.493
Polygalacturonic acid 7.4433 0.1184 0.0684
Sodium acetate 6.5552 0.3272 0.1889
No nitrogen 4.6809 0.7165 0.4137
BSA 6.7544 1.2565 0.7255
Glutamine 5.3527 0.3491 0.2016
No phosphate 6.3933 0.9024 0.521
No carbon 6.0633 2.0669 1.4615
No sulphur 4.4603 1.0377 0.5991
Simple and complex carbon sources (12h incubation) Expression profiling on diverse complex carbon sources. Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose - control 7.5802 1.3971 0.8066
Amylose 6.5617 0.8115 0.4685
Fucose 6.2373 0.9395 0.5424
Galactose 6.8087 0.8588 0.4958
Lactose 4.5959 0.8173 0.4719
Maltose 4.7072 2.5442 1.4689
Mannitol 4.5606 1.0793 0.6231
Rhamnose 5.1622 1.0897 0.6291
Sorbitol 6.7548 1.0536 0.6083
Trehalose 6.5639 1.3829 0.7984
Glycerol 4.4688 1.6629 0.96
Glucuronic acid 8.1251 0.9047 0.5223
Arabinan 6.5133 1.0753 0.6208
Galactan 6.2069 1.5351 0.8863
Galactomannan 11.7048 1.8249 1.0536
Glucan 6.3268 0.7563 0.4366
Xylan 7.6927 0.5941 0.343
Xyloglucan 8.9965 1.3842 0.7992
Arabinogalactan 8.3925 0.3563 0.2057
Pectin 5.6435 0.7861 0.4539
Rhamnogalacturonan 7.3951 1.3823 0.7981
Polygalacturonic acid 7.4102 1.9052 1.1
Mannan 8.1587 1.1234 0.6486
Amylopectin 5.4686 0.7096 0.4097
Inulin 5.1272 2.8632 1.6531
BSA 4.5619 0.3121 0.1802
Starvation induced by water agar transfer Expression profiling on starvation induced by transfer to water agar Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Control 1.3321 1.1149 0.6437
2h WAT 1.9917 0.192 0.1108
4h WAT 1.3837 0.4347 0.2509
8h WAT 1.5757 0.7006 0.4045
16h WAT 1.5925 0.6641 0.3834
24h WAT 1.0837 0.4462 0.2576
WAT hyphal knot -30h 1.0292 0.2612 0.1508
WAT hyphal knot -22h 1.2845 0.7588 0.4381
WAT hyphal knot -15h 2.0873 0.4698 0.2713
WAT hyphal knot -7.5h 0.906 0.2185 0.1262
WAT hyphal knot 2.0311 0.798 0.4607
WAT hyphal knot +7.5h 1.454 0.0608 0.0351
Straw time series Time series expression profiling on straw as a carbon source Hegedus et al. RNA-Seq
Sample Mean cpm SD cpm Se of mean
Glucose control 4.1423 2.1498 1.2412
Straw 3h 4.6735 1.3819 0.7978
Straw 6h 3.9284 2.2929 1.3238
Straw 12h 9.4921 1.3677 0.7896
Straw 24h 10.8473 0.537 0.31
Stress conditions 1 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 2.2352 2.4073 1.3899
Frost (-20C, 30min) 1.344 0.0606 0.035
Heat shock (47C, 2h) 0.2125 0.2661 0.1537
High CO2 1.4308 0.5913 0.3414
Drought (4% agar, 12h) 1.6717 0.9852 0.5688
Oxidative (1mM H2O2, 3h) 0.5592 0.4117 0.2377
Acidic (pH4, 3h) 0.912 0.3643 0.2104
Alkaline (pH9, 3h) 2.4921 0.5173 0.2987
Osmotic (sorbitol 2h) 1.2314 0.7391 0.4267
CongoRed (3h) 1.4204 0.5266 0.3041
Cobalt chloride control 0.669 0.5459 0.3152
Cobalt chloride 2mM 0.8402 0.5355 0.3092
Stress conditions 2 Expression profiling under various stress conditions Hegedus et al. QuantSeq
Sample Mean cpm SD cpm Se of mean
Flask control 2.2125 0.2764 0.1596
Cold stimulation 2.9033 1.8318 1.0576
Scratched surface 1.5626 0.2044 0.118
Ca2+, 200mM, 24h 1.8166 0.9693 0.5596
Cu2+, 2mM, 6h 1.6874 0.7156 0.4132
Voriconazole 1.8801 0.6084 0.3513
Trichoderma interaction, early 1.1933 0.2911 0.1681
Trichoderma interaction 60h 1.5862 0.6621 0.3823
Cobalt chloride 2mM repeat 2.6431 0.5802 0.335
Hypoxia 0.5412 0.2574 0.1486
Hypoxia control 0.7155 0.5223 0.3015
Protoplastation control 1.4893 0.0454 0.0321
Protoplastation 3.5h 1.1632 1.645 1.1632
Protoplastation 1.5h 1.0018 1.4168 1.0018

General data

Systematic name -
Protein id CopciAB_542340.T0
Description other FunK1 protein kinase

Annotation summary

0 100 200 300 336

Conserved domains

Analysis Signature accession Signature description InterPro Accession Start End
Pfam PF17667 Fungal protein kinase IPR040976 3 68
Pfam PF17667 Fungal protein kinase IPR040976 80 204

SignalP

Prediction Start End Score
No records

Transmembrane domains

Domain n Start End Length
No records

InterPro

Accession Description
IPR040976 Fungal-type protein kinase

GO

Go id Term Ontology
No records

KEGG

KEGG Orthology
No records

EggNOG

COG category Description
S other FunK1 protein kinase

CAZy

Class Family Subfamily
No records

Transcription factor

Group
No records

Conservation of CopciAB_542340 across fungi.

Arrow shows the origin of gene family containing CopciAB_542340.

Protein

Sequence id CopciAB_542340.T0
Sequence >CopciAB_542340.T0
MYKMQLLEISFKPRDIHGRGTACWDVGGMVEEELLIKDSWISEGRTPEYGYFEDAASTPGLADFMDGEVTTTIAF
HRDGEKRTKHRLVFTQHGLLICKFNTCLEVLWALLDAIDTHEKLVEQGVLHSIANILIIRSPTIPWHSILIDLDL
MKPPHLDEVAAAFGAGTREFQSVNVLLRHEKAQMSLPYSYLDDLESFFWVFCIISIGYKSNGKAKPTPPWIQKWR
HPDVRRVSDAKSAFLFLPPLYPDGPVSRSWGKHVQQLFWDFYDFFGNMCRLPVRIVTGHSEMTAEGLFDKRADRY
ATVRGYIKKAIDAIEAEASPKMRESEHLPPEGPEPA
Length 336

Coding

Sequence id CopciAB_542340.T0
Sequence >CopciAB_542340.T0
ATGTACAAGATGCAACTTCTGGAGATTTCGTTCAAGCCTAGGGATATTCATGGTCGTGGAACAGCGTGCTGGGAC
GTCGGGGGGATGGTCGAGGAAGAGTTGCTGATCAAGGACAGTTGGATCTCAGAGGGGCGGACACCGGAGTATGGC
TACTTCGAAGATGCCGCTAGCACACCTGGCCTCGCCGATTTTATGGATGGTGAGGTTACCACCACTATCGCCTTT
CACCGCGACGGGGAGAAGCGTACCAAGCACAGACTCGTCTTTACGCAGCATGGGCTTCTGATCTGCAAGTTCAAT
ACGTGCTTGGAGGTTCTCTGGGCCCTCCTTGACGCCATTGACACTCATGAGAAACTCGTCGAACAGGGCGTCTTG
CACAGCATTGCCAATATTCTTATCATCAGGAGCCCGACAATCCCGTGGCATAGTATCTTAATCGATCTTGACTTA
ATGAAGCCACCGCACTTAGACGAAGTGGCTGCCGCTTTCGGAGCCGGGACTCGCGAATTTCAATCCGTGAATGTC
CTTCTCCGTCACGAAAAGGCCCAGATGAGTCTCCCTTATTCGTACCTGGACGACTTGGAATCGTTCTTCTGGGTC
TTCTGTATCATCTCCATCGGATACAAGAGCAACGGCAAAGCCAAACCCACACCACCTTGGATTCAAAAGTGGAGG
CACCCAGACGTGCGCCGTGTATCTGACGCAAAGAGCGCTTTTCTCTTTCTACCACCCCTATACCCCGACGGCCCA
GTCAGCCGTTCCTGGGGAAAACATGTCCAGCAGCTGTTCTGGGATTTCTATGACTTCTTCGGAAATATGTGCCGC
CTCCCTGTTAGGATTGTCACTGGGCACTCGGAAATGACCGCGGAAGGCCTCTTCGACAAGCGCGCGGATCGTTAT
GCGACTGTCCGCGGTTACATCAAGAAAGCTATCGACGCCATCGAGGCAGAAGCCTCTCCAAAGATGCGGGAGTCC
GAACACCTGCCACCGGAGGGGCCTGAGCCGGCTTGA
Length 1011

Transcript

Sequence id CopciAB_542340.T0
Sequence >CopciAB_542340.T0
GAAACCTGACCACGAGCATTGTGTGCTCGAGACTCAGCCTCGCCTTGCTCTATTCTACCAGGGCATCCATGTCAA
AGCGAAGCCCTGGTGCCTGAAGCAGGTCTACTCGAAATCGCCAGTTATCGGGACCTACCTACCTTTGGCTTGTTT
CGAAGGCCCGGATCCTAAACATTCTGGCTTGGATAAAAGCATCGCCTGCGCCTTCGAAGACGGACGGGAAGGCCT
GCACAGAGTCGGATATAAAGGAACCATGTACAAGATGCAACTTCTGGAGATTTCGTTCAAGCCTAGGGATATTCA
TGGTCGTGGAACAGCGTGCTGGGACGTCGGGGGGATGGTCGAGGAAGAGTTGCTGATCAAGGACAGTTGGATCTC
AGAGGGGCGGACACCGGAGTATGGCTACTTCGAAGATGCCGCTAGCACACCTGGCCTCGCCGATTTTATGGATGG
TGAGGTTACCACCACTATCGCCTTTCACCGCGACGGGGAGAAGCGTACCAAGCACAGACTCGTCTTTACGCAGCA
TGGGCTTCTGATCTGCAAGTTCAATACGTGCTTGGAGGTTCTCTGGGCCCTCCTTGACGCCATTGACACTCATGA
GAAACTCGTCGAACAGGGCGTCTTGCACAGCATTGCCAATATTCTTATCATCAGGAGCCCGACAATCCCGTGGCA
TAGTATCTTAATCGATCTTGACTTAATGAAGCCACCGCACTTAGACGAAGTGGCTGCCGCTTTCGGAGCCGGGAC
TCGCGAATTTCAATCCGTGAATGTCCTTCTCCGTCACGAAAAGGCCCAGATGAGTCTCCCTTATTCGTACCTGGA
CGACTTGGAATCGTTCTTCTGGGTCTTCTGTATCATCTCCATCGGATACAAGAGCAACGGCAAAGCCAAACCCAC
ACCACCTTGGATTCAAAAGTGGAGGCACCCAGACGTGCGCCGTGTATCTGACGCAAAGAGCGCTTTTCTCTTTCT
ACCACCCCTATACCCCGACGGCCCAGTCAGCCGTTCCTGGGGAAAACATGTCCAGCAGCTGTTCTGGGATTTCTA
TGACTTCTTCGGAAATATGTGCCGCCTCCCTGTTAGGATTGTCACTGGGCACTCGGAAATGACCGCGGAAGGCCT
CTTCGACAAGCGCGCGGATCGTTATGCGACTGTCCGCGGTTACATCAAGAAAGCTATCGACGCCATCGAGGCAGA
AGCCTCTCCAAAGATGCGGGAGTCCGAACACCTGCCACCGGAGGGGCCTGAGCCGGCTTGAGGCTGAGAGACGGC
CCAAGCGGGTTCCTCCACATCGACGACTATCACTGAATTTCCCTCGGGCTAACGCAATCGACATTCGTATCCGGT
CTCGCACCGATTCTGGCATTAATCCTGTTCGCTATATCCCGTTCTTCAAGCACATACCTCCACGCGCAGTGTGTC
CGGCCTTGATGTCCTCCGTCTTGGGCCCAGACTATCTATACGAGCGCACGAATCGCATAGCTGTCTGTCTTTCGA
CCCTTTGTCTTTATACCCTCCATTGCCGTCCTCGTCGCTTTTTTTCTTTATGAAAGCTCGAGGCCGGGGTGCATG
CTATTAAGGGAAATGGATGCTTCCGAGAATACTTAGTCAAACGCGATGGAAACTCTTTCACATTCGTGCCATCA
Length 1649

Gene

Sequence id CopciAB_542340.T0
Sequence >CopciAB_542340.T0
GAAACCTGACCACGAGCATTGTGTGCTCGAGACTCAGCCTCGCCTTGCTCTATTCTACCAGGGCATCCATGTCAA
AGCGAAGCCCTGGTGCCTGAAGCAGGTCTACTCGAAATCGCCAGTTATCGGGACCTACCTACCTTTGGCTTGTTT
CGAAGGCCCGGATCCTAAACATTCTGGCTTGGATAAAAGCATCGCCTGCGCCTTCGAAGACGGACGGGAAGGCCT
GCACAGAGTCGGATATAAAGGAACCATGTACAAGATGCAACTTCTGGAGATTTCGTTCAAGCCTAGGGATATTCA
TGGTCGTGGAACAGCGTGCTGGGACGTCGGGGGGATGGTCGAGGAAGAGTTGCTGATCAAGGACAGTTGGATCTC
AGAGGGGCGGACACCGGAGTATGGCTACTTCGAAGATGCCGCTAGCACACCTGGCCTCGCCGATTTTATGGATGG
TGAGGTTACCACCACTATCGCCTTTCACCGCGACGGGGAGAAGCGTACCAAGCACAGACTCGTCTTTACGCAGCA
TGGGCTTCTGATCTGCAAGTTCAATACGTGCTTGGAGGTTCTCTGGGCCCTCCTTGACGCCATTGACAGTATGTC
TGTCGGTTTTACGCATTCTTCATCTGGTACTGATATGATGCGTTCCAGCTCATGAGAAACTCGTCGAACAGGGCG
TCTTGCACAGCATTGCCAATATTCTTATCATCAGGAGCCCGACAATCCCGTGGCATAGTATCTTAATCGATCTTG
ACTTAATGAAGCCACCGCACTTAGACGAAGTGGCTGCCGCTTTCGGAGCCGTATGTTTCGCGCGTTCTTCATTCC
TGTGAATGGATGATCTGATAGATCCTTTGTAGGGGACTCGCGAATTTCAATCCGTGAATGTCCTTCTCCGTCACG
AAAAGGCCCAGATGAGTCTCCCTTATTCGTACCTGGACGACTTGGAATCGTTCTTCTGGGTCTTCTGTATCATCT
CCATCGGATACAAGAGCAACGGCAAAGCCAAACCCACACCACCTTGGATTCAAAAGTGGAGGCACCCAGACGTGC
GCCGTGTATCTGACGCAAAGAGCGCTTTTCTCTTTCTACCACCCCTATACCCCGACGGCCCAGTCAGCCGTTCCT
GGGGAAAACATGTCCAGCAGCTGTTCTGGGATTTCTATGACTTCTTCGGAAATATGTGCCGCCTCCCTGTTAGGA
TTGTCACTGGGCACTCGGAAATGACCGCGGAAGGCCTCTTCGACAAGCGCGCGGATCGTTATGCGACTGTCCGCG
GTTACATCAAGAAAGCTATCGACGCCATCGAGGCAGAAGCCTCTCCAAAGATGCGGGAGTCCGAACACCTGCCAC
CGGAGGGGCCTGAGCCGGCTTGAGGCTGAGAGACGGCCCAAGCGGGTTCCTCCACATCGACGACTATCACTGAAT
TTCCCTCGGGCTAACGCAATCGACATTCGTATCCGGTCTCGCACCGATTCTGGCATTAATCCTGTTCGCTATATC
CCGTTCTTCAAGCACATACCTCCACGCGCAGTGTGTCCGGCCTTGATGTCCTCCGTCTTGGGCCCAGACTATCTA
TACGAGCGCACGAATCGCATAGCTGTCTGTCTTTCGACCCTTTGTCTTTATACCCTCCATTGCCGTCCTCGTCGC
TTTTTTTCTTTATGAAAGCTCGAGGCCGGGGTGCATGCTATTAAGGGAAATGGATGCTTCCGAGAATACTTAGTC
AAACGCGATGGAAACTCTTTCACATTCGTGCCATCA
Length 1761